|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021873 ID=TCONS_00021873|Name=TCONS_00021873|organism=Clytia hemisphaerica|type=transcript|length=834bp
CTTCAATCATTTAGatagttttcaaaacaaagttcaatCTCCGGCTAGAT
TCAGAATAACGACCTGAATTAATGTTGTTtcatattttaaagattttcac
atTACATTGGCGAATCTACAAGGCTTTAGTGGTACCAGTATTTACAAATG
TTGTCGACAATATTTCGCTATCTTTATTATTTCCGATTTTGGTTGATTGT
TATCGTATGGAGTATGACACTCTTAAACCAAGGTCAAACTTTACCAGTCA
ACGTATATGACGAGCTTCAAcccttttcacttttcaaaacaaGAGAAAAT
CCGTTTGAGAAACGCGAAAAACTAACAGTCGATGATACGATCaagaaaga
atttaaaaaacttcaaGACATTCGAAAATTATTAATGAGGATGGGCGGAG
GAAGCAAAATATCTCAACAAGATTCAGCTTTTGGTTCCATCGGTTATTGG
AGAGGGAAACGAGATGAACTCACAGAATCAGTACCAGACTCTGTGAACCC
TTTTTTCCATATGGAAAAGGAGATAGTTTAATTTATTGTTTAGGCCTTTC
TCGTTGAACATCACTGGTGTACTTAAGTCAAGATTATTTAACTTTTGCTA
TTGGAATACACCCGAAAAAGCGAAAATTCGACCCATTGTCAAGAAAAAGA
TGacttcaccaaaattttgtatttgtaCTTTTTCTAACAACATATGTCTT
CGCCACAAGGGACCTTTGATTCACTTAAATGGAGCTTCGTGATATTGTGA
CGTTGACTGTGGATACCCAGGGTAGCTTTTTCACCTCTTGGAGTCTCTTT
CAGGGTCCTTTTTTCAGCTTTCATAGTCTCACAC Run BLAST on NCBI protein sequence of TCONS_00021873-protein >TCONS_00021873-protein ID=TCONS_00021873-protein|Name=TCONS_00021873-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
MLSTIFRYLYYFRFWLIVIVWSMTLLNQGQTLPVNVYDELQPFSLFKTRE
NPFEKREKLTVDDTIKKEFKKLQDIRKLLMRMGGGSKISQQDSAFGSIGY
WRGKRDELTESVPDSVNPFFHMEKEIV Run BLAST on NCBI transcript from alignment at sc0000396:95676..98161+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021873 ID=TCONS_00021873|Name=TCONS_00021873|organism=Clytia hemisphaerica|type=transcript|length=2486bp|location=Sequence derived from alignment at sc0000396:95676..98161+ (Clytia hemisphaerica)
CTTCAATCATTTAGatagttttcaaaacaaagttcaatCTCCGGCTAGAT
TCAGAATAACGACCTGAATTAATGTTGTTtcatattttaaagattttcac
atTACATTGGCGAATCTACAAGGCTTTAGTGGTACCAGTATTTACAAATG
TTGTCGACAATATTTCGCTATCTTTATTATTTCCGATTTTGGTTGATTGT
TATCGTATGGAGTATGACACTCTTAAACCAAGGTAAATGAATATTTTGTC
GGTTTCAAGGCATTTAACAGGGCTACACCTATAAAGTCAGATcggtgtca
aaatcaaaacgtcgggtcgtaatgtcaaactgtcagatcgtcgggtcgaa
ccgtcgggtcgaaccgtcgggtcgtaatgtcaaaaagtcaggtcgtcggg
tcgaaccgtcgggtcgtaatgtcaaaaggtcaggtagtaatatcaaaggg
tcgggtcgtaatatcaaaaggTCGGGTCGTGTTATCGAACGGCCGGGTCG
TAGCGTCGAGCCAGACTGCCGGGTTAAACTGCGGGGATACAATGCCGGAT
CATCGGGTTTATCGGGCTTATCGGAATAGTTAAAATCTCGTTCCGCAGAA
TACTATAAATTAAATTCTTGGAAGATATATCTGGGGCCTTAAAATGATCC
AGCAAGGAATATTTTGACACGTGCTTGGACAACAACAAATGGAGACAGGA
TGGAGATCCCCCATGACTCAAGTTTCTTCCAAAAGCTGTGTAACAATCAA
ActaaaaacgaaaaatttgGTATCAGTTTCAATTTACAGCAGTTACATTA
AGCATTGCCTCTGTTAATTATATTGTCTTTGGTCTCCCAAAGATTAAAGA
ATAAAGCAAGGGTGTATagccccctacaattaagcacagaagagtaaCAA
CAGAGAGAAAGATATTTAGGATTATTCTTAGACTATACTCTACTCCTGGC
GGCTGAACTTTACTTTCTCTGATAATTTTAGAgcgtcatccagtctatca
ataAGCACTAAGTGGACTCCAGGCTAGATTTATTCTAAAAacgttagaaa
aataaaaaagctatgatGTACATCGGGccttaaaaaatgatattttacag
aacgatGTTAAATATCCCGATAAACCGGCATTGGATCCCGGCTGTTTAAA
CCGGCCGTCTGGCTCGACGCTTCGATCCGACCGTTcgatattacgacccg
acctTTTGTCATCACGACCtgaccctttgatattacgacccgacattttc
cgaccctttgatattacgacctgaccttttgacattacgacccgaccttt
tgatattacgacccgactctttgatattacgacccgacggttcgacccga
cgatctGACAGTTTGACATTACGGCCCGACGGTTCGGCTAGACGATCTGA
CGGTTTGACATTACGGCCcgacgttttgattttgacaccgATCTGACTTt
atacacacccctgtctcacagcccagtTGGAATATTTCGGTCACCCACAG
CGAAcgtaaaagtttgaaaatagaaattctactattcaaaaatccagtgg
ggatggtttcaGATAGGAGATAAAATCaaagtgaatttgaaaaatagtaG
GAAATCTTTCCCACGGGAGACGAAACATTCGTCAAGTGGGGTGATGGTCC
CACCGGATAATTTACACTGACTGACCATTTCATTGTTGATGCAGCAATAG
CACCTTAGATTACCAATTATCGAAAATCCTCTGGAACTAATGTTACTTTT
GGACAGGAAACCGTACCGttatttaaagttttatattttaattgtttttt
aagGTTCTCTTTATACTCTTGCTACCCTTTAGAATCTACGTTATGTCCAT
TATAATGTTTATACGTTTTTGTAAATTATTCTAGGTCAAACTTTACCAGT
CAACGTATATGACGAGCTTCAAcccttttcacttttcaaaacaaGAGAAA
ATCCGTTTGAGAAACGCGAAAAACTAACAGTCGATGATACGATCaagaaa
gaatttaaaaaacttcaaGACATTCGAAAATTATTAATGAGGATGGGCGG
AGGAAGCAAAATATCTCAACAAGATTCAGCTTTTGGTTCCATCGGTTATT
GGAGAGGGAAACGAGATGAACTCACAGAATCAGTACCAGACTCTGTGAAC
CCTTTTTTCCATATGGAAAAGGAGATAGTTTAATTTATTGTTTAGGCCTT
TCTCGTTGAACATCACTGGTGTACTTAAGTCAAGATTATTTAACTTTTGC
TATTGGAATACACCCGAAAAAGCGAAAATTCGACCCATTGTCAAGAAAAA
GATGacttcaccaaaattttgtatttgtaCTTTTTCTAACAACATATGTC
TTCGCCACAAGGGACCTTTGATTCACTTAAATGGAGCTTCGTGATATTGT
GACGTTGACTGTGGATACCCAGGGTAGCTTTTTCACCTCTTGGAGTCTCT
TTCAGGGTCCTTTTTTCAGCTTTCATAGTCTCACAC Coding sequence (CDS) from alignment at sc0000396:95676..98161+ >TCONS_00021873 ID=TCONS_00021873|Name=TCONS_00021873|organism=Clytia hemisphaerica|type=CDS|length=768bp|location=Sequence derived from alignment at sc0000396:95676..98161+ (Clytia hemisphaerica)
ATGTTGTCGACAATATTTCGCTATCTTTATTATTTCCGATTTTGGTTGAT
TGTTATCGTATGGAGTATGACACTCTTAAACCAAGGTCAAACTTTACCAG
TCAACGTATATGACGAGCTTCAAcccttttcacttttcaaaacaaGAGAA
AATCCGTTTGAGAAACGCGAAAAACTAACAGTCGATGATACGATCaagaa
agaatttaaaaaacttcaaGACATTCGAAAATTATTAATGAGGATGGGCG
GAGGAAGCAAAATATCTCAACAAGATTCAGCTTTTGGTTCCATCGGTTAT
TGGAGAGGGAAACGAGATGAACTCACAGAATCAGTACCAGACTCTGTGAA
CCCTTTTTTCCATATGGAAAAGGAGATAGTTTAAATGTTGTCGACAATAT
TTCGCTATCTTTATTATTTCCGATTTTGGTTGATTGTTATCGTATGGAGT
ATGACACTCTTAAACCAAGGTCAAACTTTACCAGTCAACGTATATGACGA
GCTTCAAcccttttcacttttcaaaacaaGAGAAAATCCGTTTGAGAAAC
GCGAAAAACTAACAGTCGATGATACGATCaagaaagaatttaaaaaactt
caaGACATTCGAAAATTATTAATGAGGATGGGCGGAGGAAGCAAAATATC
TCAACAAGATTCAGCTTTTGGTTCCATCGGTTATTGGAGAGGGAAACGAG
ATGAACTCACAGAATCAGTACCAGACTCTGTGAACCCTTTTTTCCATATG
GAAAAGGAGATAGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021873-exon-sc0000396-1491911889:95676..95907 | TCONS_00021873-exon-sc0000396-1491911889:95676..95907 | Clytia hemisphaerica | exon |
| TCONS_00021873-exon-sc0000396-1510915933:95676..95907 | TCONS_00021873-exon-sc0000396-1510915933:95676..95907 | Clytia hemisphaerica | exon |
| TCONS_00021873-exon-sc0000396-1575043694:95676..95907 | TCONS_00021873-exon-sc0000396-1575043694:95676..95907 | Clytia hemisphaerica | exon |
| TCONS_00021873-exon-sc0000396-1491911889:97560..98161 | TCONS_00021873-exon-sc0000396-1491911889:97560..98161 | Clytia hemisphaerica | exon |
| TCONS_00021873-exon-sc0000396-1510915933:97560..98161 | TCONS_00021873-exon-sc0000396-1510915933:97560..98161 | Clytia hemisphaerica | exon |
| TCONS_00021873-exon-sc0000396-1575043694:97560..98161 | TCONS_00021873-exon-sc0000396-1575043694:97560..98161 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000396 | supercontig | sc0000396:95676..98161 + |
Blast
The following BLAST results are available for this feature:
|
