|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021868 ID=TCONS_00021868|Name=TCONS_00021868|organism=Clytia hemisphaerica|type=transcript|length=6931bpRun BLAST on NCBI protein sequence of TCONS_00021868-protein >TCONS_00021868-protein ID=TCONS_00021868-protein|Name=TCONS_00021868-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2120bp MKIGLVFLLLATTQVVSSRIHISLSLISYSNPKGVKSDSTCCDLGQDCFIRun BLAST on NCBI transcript from alignment at sc0000396:37012..48909+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021868 ID=TCONS_00021868|Name=TCONS_00021868|organism=Clytia hemisphaerica|type=transcript|length=11898bp|location=Sequence derived from alignment at sc0000396:37012..48909+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000396:37012..48909+ >TCONS_00021868 ID=TCONS_00021868|Name=TCONS_00021868|organism=Clytia hemisphaerica|type=CDS|length=108171bp|location=Sequence derived from alignment at sc0000396:37012..48909+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021868 vs. Swiss-Prot (Human)
Match: SSPO (SCO-spondin OS=Homo sapiens GN=SSPO PE=2 SV=1) HSP 1 Score: 675.626 bits (1742), Expect = 0.000e+0 Identity = 411/1201 (34.22%), Postives = 608/1201 (50.62%), Query Frame = 3
Query: 1668 AICSLFGPSTIKTFDSKYYSFVGECQYKLAGDCKEDTFSVHYR--QRCETFSNCQRDVTLYTNGLEVNLFHFDRVEMNKEKISLPFSSPNIVIETLKGTDYISINGMKGLTV-LWNGRNIDIKLLPSFANKTCGLCGNFNGAPKDDF-KIKGDILQSSDDFAKYWKKLDFGEKCPKRQPVMYENEYLLPNQVNDDDG-TNAQILKLCNDFRNYPDLSVCRTVVPVQPYFNMCM---------KECQTAQKNCSCNSYKEFAKACLDHHA-VMWKVPKPCANTRCPGGKTYQICNKNCIKTCKDMNK--KMTCTLPKCMSGCFCPEGTVLNKGQCVPVADCPCVHNKKEYQKGEKIRKDCNECVCSHGKWNCTTNQCPATCSVFGDPHYKTFDGRWYTFNGL--CKYMLASDCTGNTFNITTQNVPCNAFSDVSCARSTTINLSNRTIVLGQGGRVMVDNTVVMLPYI-RRGILIRQVXXXXXXXXXXIGLDVMFDGKTTIYVTVSPDFFDSTCGLCGTFNNKQQDDFTTPEGNIDSTALSFGNSWSVSSPCQRATHS---VDPCVVQKQKATAADKKCKKLEMAPFTQCHRFVDPQPFIEACKYDVCGCQHGVECLCNAIAAYTKECSSKGVVIEWRNANVLPECAAMCVPGLVYQECGNICHRSCRDLTHEENCQ--SQCVAGCNCPNGTVLNDYNSCVPINDCPCQWDGNSYPSGQIIYKDKNHCEKCTCI-RGRFNCTVDAKNCKQQLKCPGNQIWLPGGSQCLRTCQSMHLPCLNQK----VTGGCQCANGTVWDEDRRQCVLNIDCPCHHNGRTYADGESYRWDCNTCTCKGNMWDCTANVCPGTCSAYGDPHYTTFDGKRFLFEGRCKYTVAEDRCGSLNNNGLFSVVMENILCGSTGSVCTKAVSFTVNDTTITLRKDQAMTI-MPSLAFMQSTPITKFEVIKSTFYDIIHTELGITLMWDRHTRVMISLQPQFKGKTCGLCGNFNDDQSDDFTTPEGDVVINTQELGDSWKMDTNCPDTKPLPHPCTVRKDRAPWSFKRCNILNQPLFQSCHMVVDPRPYFDACYHDTCGCDMGGDSHCLCTSVAAYAQACSSYGVHIKWRSQEFCPIQCEQCEVYKACGPSNPRTC-QNLCQPTLETLPVNCVEGCFCANDTVLHNGKCIKPSECPCYLNGLVYEPGSYIVRDCQPCTCNNG 5174
A C+ + +TFD ++Y F+G C Y LAG + T++VH RC +CQR T G E L V + + + S + D++ ++G G+ V L +I I + +T GLCG +NG P+DDF + G + + F W+ C V + L + + G A+ +C+ P C V Y C+ Q ++ C ++ + +AC H + W+ P C CPGG+ Y C C +C+ + + + +C +C+SGC CP G N CVP A CPC + ++ Y G+ +R+ CN CVC G+W+C CPA C+V GD HY TFDGR Y+F G C+Y L D I ++ C+A S C + +++L + I L G V+V+ V LP+I G+ +R+ SS+F+ + + Y+T+ P GLCGTF QQDDF TP G+++++ +F + + V+ + + + PC Q+ A+ C L + F +CHR VD +PF C VCGC G +CLC ++AY + C+ +G WRN + C MC G Y+EC C + C E+C CVAGCNCP G + + CVP + CPCQ Y G K+ C +C C RG +NCT A++C Q CP ++ PG CL TC S P N T GC C GTV ++R CV CPC H+G+ Y + + DCN C C+G W CT G C A G PHY TFDG F + G C+Y + + +GLF+V +N+ CG++G CTKA++ + T + + + +A+T+ S+ + + ++ + ++ T LG+TL+WD TRV++ L PQF+G+ GLCG+F+ D S+D + +G + + SW++ CP+ LPHPCT+ RA W+ RC L QPLF CH V P+ +++ C +D CGCD GGD CLC+++A YA C+ +G H++WRSQE C +QCE +VY+ACGP+ P TC + +P V CVEGCFC T+LH G C++P+ CPC + PGS + +DC CTC G
Sbjct: 193 ATCASWSGFHYRTFDGRHYHFLGRCTYLLAGA-ADSTWAVHLTPGDRCPQPGHCQR----VTMGPEEVLIQAGNVSVKGQLVPEGQSWLLHGLSLQWLGDWLVLSGGLGVVVRLDRTGSISISVDHELWGQTQGLCGLYNGWPEDDFMEPGGGLAMLAATFGNSWRLPGSESGCLDAVEVAQGCDPLGLIDADVEPGHLRAEAQDVCHQLLEGP-FGQCHAQVSPAEYHEACLFAYCAGAMAGSGQEGRQQAVCATFASYVQACARRHIHIRWRKPGFCERL-CPGGQLYSDCVSLCPPSCEAVGQGEEESCRE-ECVSGCECPRGLFWNGTLCVPAAHCPCYYCRQRYVPGDTVRQLCNPCVCRDGRWHCAQALCPAECAVGGDGHYLTFDGRSYSFWGGQGCRYSLVQDYVKGQLLILLEHGACDAGS---CLHAISVSLEDTHIQLRDSGAVLVNGQDVGLPWIGAEGLSVRRASSAFLLLRWPGAQVLWGLSDPVAYITLDPRHAHQVQGLCGTFTQNQQDDFLTPAGDVETSIAAFASKFQVAGKGRCPSEDSALLSPCTTHSQRHAFAEAACAILHSSVFQECHRLVDKEPFYLRCLAAVCGCDPGSDCLCPVLSAYARRCAQEGASPPWRNQTL---CPVMCPGGQEYRECAPACGQHC---GKPEDCGELGSCVAGCNCPLGLLWDPEGQCVPPSLCPCQLGARRYAPGSATMKE---CNRCICQERGLWNCT--ARHCPSQAFCPRELVYAPGA--CLLTCDS---PSANHSCPAGSTDGCVCPPGTVLLDER--CVPPDLCPCRHSGQWYLPNATIQEDCNVCVCRGRQWHCTGQRRSGRCQASGAPHYVTFDGLAFTYPGACEYLLVRE------ASGLFTVSAQNLPCGASGLTCTKALAVRLEGTVVHMLRGRAVTVNGVSVTPPKVYTGPGLSLRRAGLFLLLSTHLGLTLLWDGGTRVLVQLSPQFRGRVAGLCGDFDGDASNDLRSRQGVLEPTAELAAHSWRLSPLCPEPGDLPHPCTMNTHRAGWARARCGALLQPLFTLCHAEVPPQQHYEWCLYDACGCDSGGDCECLCSAIATYADECARHGHHVRWRSQELCSLQCEGGQVYEACGPTCPPTCHEQHPEPGWHCQVVACVEGCFCPEGTLLHGGACLEPASCPCEWGRNSFPPGSVLQKDCGNCTCQEG 1358 HSP 2 Score: 273.478 bits (698), Expect = 4.647e-73 Identity = 157/449 (34.97%), Postives = 231/449 (51.45%), Query Frame = 3
Query: 2511 CIKTCKDMNKKMTCTLPKCMSGCFCPEGTVLNKGQCVPVADCPCVHNKKEYQKGEKIRKDCNECVCSHGKWNCTTNQCPATCSVFGDPHYKTFDGRWYTFNGLCKYMLASDCTGNTFNITTQNVPCNAFSDVSCARSTTINLSNRTIVLGQGGRVMVDNTVVMLP--YIRRGILIRQVXXXXXXXXXXIGLDVMFDGKTTIYVTVSPDFFDSTCGLCGTFNNKQQDDFTTPEGNIDSTALSFGNSWSVSSPCQRATHSVDPCVVQKQKATAADKKCKKLEMAPFTQCHRFVDPQPFIEACKYDVCGCQHG--VECLCNAIAAYTKECSSKGVVIEWRNANVLPECAAMCVPGLVYQECGNICHRSCRDLTHEENCQSQ---CVAGCNCPNGTVLNDYNSCVPINDCPCQWDGNSYPSGQIIYKDKNHCEKCTCIRGRFNCTVDAKNCKQ 3836
C+ TC + +C GC CP GTVL +CVP CPC H+ + Y I++DCN CVC +W+CT + C G PHY TFDG +T+ G C+Y+L + +G F ++ QN+PC A S ++C ++ + L + + +G V V+ V P Y G+ +R+ + + +GL +++DG T + V +SP F GLCG F+ +D + +G ++ TA +SW +S C PC + +A A +C L FT CH V PQ E C YD CGC G ECLC+AIA Y EC+ G + WR+ + C+ C G VY+ CG C +C + E Q CV GC CP GT+L+ +C+ CPC+W NS+P G ++ KD C CTC G+++C D +C++
Sbjct: 934 CLLTCDSPSANHSCPA-GSTDGCVCPPGTVLLDERCVPPDLCPCRHSGQWYLPNATIQEDCNVCVCRGRQWHCTGQRRSGRCQASGAPHYVTFDGLAFTYPGACEYLLVREASG-LFTVSAQNLPCGA-SGLTCTKALAVRLEGTVVHMLRGRAVTVNGVSVTPPKVYTGPGLSLRRAGLFLLLSTH-LGLTLLWDGGTRVLVQLSPQFRGRVAGLCGDFDGDASNDLRSRQGVLEPTAELAAHSWRLSPLCPEPGDLPHPCTMNTHRAGWARARCGALLQPLFTLCHAEVPPQQHYEWCLYDACGCDSGGDCECLCSAIATYADECARHGHHVRWRSQEL---CSLQCEGGQVYEACGPTCPPTCHEQHPEPGWHCQVVACVEGCFCPEGTLLHG-GACLEPASCPCEWGRNSFPPGSVLQKD---CGNCTCQEGQWHCGGDGGHCEE 1371 HSP 3 Score: 145.591 bits (366), Expect = 2.726e-34 Identity = 93/364 (25.55%), Postives = 167/364 (45.88%), Query Frame = 3
Query: 1674 CSLFGPSTIKTFDSKYYSFVGECQYKLAGDCKEDTFSVHYRQRCETFSN--CQRDVTLYTNGLEVNLFHFDRVEMNKEKISLP--FSSPNIVIETLKGTDYISINGMKGLTVLWNG-RNIDIKLLPSFANKTCGLCGNFNGAPKDDFKIKGDILQSSDDFAKYWKKLDFGEKCPKRQPVMYENEYLLPNQVNDDDGTNAQILKLCNDFRNYPDLSVCRTVVPVQPYFNMCMKE---CQTAQK-NCSCNSYKEFAKACLDH-HAVMWKVPKPCANTRCPGGKTYQICNKNCIKTCKDMNKK--MTCTLPKCMSGCFCPEGTVLNKGQCVPVADCPCVHNKKEYQKGEKIRKDCNECVCSHGKWNC 2729
C G TFD +++ G C+Y L + F+V + S C + + + G V++ V +N ++ P ++ P + + + ++ ++ GLT+LW+G + ++L P F + GLCG+F+G +D + + +L+ + + A + +L CP+ LP+ + C P ++C VP Q ++ C+ + C + C C++ +A C H H V W+ + C + +C GG+ Y+ C C TC + + + C + C+ GCFCPEGT+L+ G C+ A CPC + + G ++KDC C C G+W+C
Sbjct: 1014 CQASGAPHYVTFDGLAFTYPGACEYLLVRE-ASGLFTVSAQNLPCGASGLTCTKALAVRLEGTVVHMLRGRAVTVNGVSVTPPKVYTGPGLSLR--RAGLFLLLSTHLGLTLLWDGGTRVLVQLSPQFRGRVAGLCGDFDGDASNDLRSRQGVLEPTAELAAHSWRLS--PLCPE--------PGDLPHPCTMNTHRAGWARARCGALLQ-PLFTLCHAEVPPQQHYEWCLYDACGCDSGGDCECLCSAIATYADECARHGHHVRWRSQELC-SLQCEGGQVYEACGPTCPPTCHEQHPEPGWHCQVVACVEGCFCPEGTLLHGGACLEPASCPCEWGRNSFPPGSVLQKDCGNCTCQEGQWHC 1362 HSP 4 Score: 115.931 bits (289), Expect = 2.899e-25 Identity = 101/374 (27.01%), Postives = 155/374 (41.44%), Query Frame = 3
Query: 1665 PAICSLFGPSTIKTFDSKYYSFVG--ECQYKLAGDCKEDTFSVHYRQRCETFSNCQRDVTLYTNGLEVNLFHFDRVEMNKEKISLPFSSPNIVIETLKGTDYISINGMKGLTVLWNGRN--IDIKLLPSFANKTCGLCGNFNGAPKDDFKI-KGDILQSSDDFAKYWKKLDFGEKCPKRQPVMYENEYLLPNQVNDDDGTNAQILKLCNDFRNYPDLSVCRTVVPVQPYFNMCMKE---CQTAQKNCSCNSYKEFAKACLDHHAV-MWKVPKPCANTRCPGGKTYQICNKNCIKTCKDMNKKMTC-TLPKCMSGCFCPEGTVLN-KGQCVPVADCPCVHNKKEYQKGEKIRKDCNECVC-SHGKWNCTTNQCPA 2750
PA C++ G TFD + YSF G C+Y L D + + +C +++ + L V +N + + LP+ + + ++ + G VLW + I L P A++ GLCG F +DDF GD+ S FA ++ G +CP E+ LL + +A C + C +V +P++ C+ C +C C +A+ C A W+ C CPGG+ Y+ C C + C K C L C++GC CP G + + +GQCVP + CPC + Y G K+CN C+C G WNCT CP+
Sbjct: 561 PAECAVGGDGHYLTFDGRSYSFWGGQGCRYSLVQDYVKGQLLILLEHGACDAGSCLHAISVSLEDTHIQLRDSGAVLVNGQDVGLPWIGAEGLSVRRASSAFLLLR-WPGAQVLWGLSDPVAYITLDPRHAHQVQGLCGTFTQNQQDDFLTPAGDVETSIAAFASKFQVAGKG-RCPS------EDSALL-SPCTTHSQRHAFAEAACAILHSS-VFQECHRLVDKEPFYLRCLAAVCGCDPG-SDCLCPVLSAYARRCAQEGASPPWRNQTLCP-VMCPGGQEYRECAPACGQHC---GKPEDCGELGSCVAGCNCPLGLLWDPEGQCVPPSLCPCQLGARRYAPGSATMKECNRCICQERGLWNCTARHCPS 919 The following BLAST results are available for this feature:
BLAST of TCONS_00021868 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.