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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021851 ID=TCONS_00021851|Name=TCONS_00021851|organism=Clytia hemisphaerica|type=transcript|length=1652bp
ATAACATCGACTTGTTATAGCCATTTCTCATGTTTTTGTGTTGTCTTGTT
GTGGTGTTTATTAAGAAACCAACGAGGTTTAGAAATAAGGAGGTCATAAA
AAGAGCTATATCACATCGCCAATTATAAACAACTAAACCTACGCAACTAA
AATCTGAAATGGCTGCAAATTTAGAAGAGTTCCATGCCGACCTCCAACAA
GCTTTTCACGAGGCACGTAACAATAAAGAGTTGGATTTTGAGAAGGAATA
TCAAACACAACAAGATTTGTATGAAAAATACGCCAGTAATTGGAACCAAT
TGATGATCGAGACAGAATTCAAAGCACCTCAAATACTTGCCAGTATTATA
AGTGATTTGTATGGGGAAAACAAATGTGTGACGGTTTTAGATTATGGCTG
TGGTACTGGACCTGTGGCAAGCGCGCTGGTCAATTTGCATGGATTCCCAA
AAATGATCGATGGTTTAGATCCTTGTTTGGAACTTCTTGAAATCGCCAAG
AAAAATGACAGAATGAGAAATTACTACAGTTTGGGAAGTACAGATGATCA
CAGTGTTTTGGGATTGAAAAATTATGATATGGTTTGTTCATCGGGAGTTT
TCTTTGCAACTCCTTCGCATCCTAATTTAGACTGTCTTCCACAATTATGT
GATCTTGTGAAGAAAAGAGGCTACATTTTCATTTGCACTGGTCAAATTTA
TATGAAGATTGCTCAAATGGAACATGCAGAACGTTTGGAAAGAGAGGGAA
AGATCAAGATTTTACCAACTGAAGTTTTTGATGGATACAGGAAAGCTACA
GATTTGGAAGAAGGTCAAACGATCAAAGGTGTTGTTTTGAAGTTTCAAGT
GATTTCTTAAAATTTGCACCCTTAATTCCTTagttcatttttaatttgtt
agtTCGATAAAACagcaaaataattttattatcTATTAAGAGTCGTGACA
TAATGTAACTAGCAACTTCATATCATAGAAAATGTTGGAGCCCTCCCCCC
AACTGAAAAAATACATTTATCTTATCTAAGAGAAAATGGAGTCGGAAAAG
TTATACTCTCAAAAAGTATCCCACTTTTTGAGCTCAAAGCAATAAATTAT
TATCCTAATTGATATTTCGGTGAGATTCCATATATCACTTAGTGAAAAAT
TCCATCCGGGCATTGAGACAAGTGATGTTACCAGCTGGAATGTCGCAAGC
AGCGACAAGCTACGTACGCGAGTATCGGGCCATCTTAAATTCATCCTCTC
CctatatttgaaaaagttttttgcacTCTTGAAATCCTCGTACTAAATCT
ATATACCATTTTTTTCTAGAAGAGCCTGTTGATAATTATGGAGGTAATTA
TTTTATTTCTGTTAAATGCAACGCATTTGTTTGTCAAAGAATAACTTTCA
AGATTAATTTAGTCCAATTCtatgaatatttttcttgtaTTGCAATATGT
AGATGTTCGAGGTCTTTTGCCGTTAGATTCCTTCCCTTGTTCTGAGCGAA
AGCTGACAAAAAGTCGTGTACTTAAACAAATAAAGGAAAACAGgctttaa
aagttcaaaattctgTCAGTTAGAgtacgattgacgtcaaattttgtcta
aaccGTACGGAGTCTGACAGAATTTTGAACTTTAAGTGGCCGTTATCTTT
TT Run BLAST on NCBI protein sequence of TCONS_00021851-protein >TCONS_00021851-protein ID=TCONS_00021851-protein|Name=TCONS_00021851-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
MAANLEEFHADLQQAFHEARNNKELDFEKEYQTQQDLYEKYASNWNQLMI
ETEFKAPQILASIISDLYGENKCVTVLDYGCGTGPVASALVNLHGFPKMI
DGLDPCLELLEIAKKNDRMRNYYSLGSTDDHSVLGLKNYDMVCSSGVFFA
TPSHPNLDCLPQLCDLVKKRGYIFICTGQIYMKIAQMEHAERLEREGKIK
ILPTEVFDGYRKATDLEEGQTIKGVVLKFQVIS Run BLAST on NCBI transcript from alignment at sc0000395:53588..55239 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021851 ID=TCONS_00021851|Name=TCONS_00021851|organism=Clytia hemisphaerica|type=transcript|length=1652bp|location=Sequence derived from alignment at sc0000395:53588..55239 (Clytia hemisphaerica)
AAAAAGATAACGGCCACTTAAAGTTCAAAATTCTGTCAGACTCCGTACgg
tttagacaaaatttgacgtcaatcgtacTCTAACTGAcagaattttgaac
ttttaaagcCTGTTTTCCTTTATTTGTTTAAGTACACGACTTTTTGTCAG
CTTTCGCTCAGAACAAGGGAAGGAATCTAACGGCAAAAGACCTCGAACAT
CTACATATTGCAAtacaagaaaaatattcataGAATTGGACTAAATTAAT
CTTGAAAGTTATTCTTTGACAAACAAATGCGTTGCATTTAACAGAAATAA
AATAATTACCTCCATAATTATCAACAGGCTCTTCTAGAAAAAAATGGTAT
ATAGATTTAGTACGAGGATTTCAAGAgtgcaaaaaactttttcaaatata
gGGAGAGGATGAATTTAAGATGGCCCGATACTCGCGTACGTAGCTTGTCG
CTGCTTGCGACATTCCAGCTGGTAACATCACTTGTCTCAATGCCCGGATG
GAATTTTTCACTAAGTGATATATGGAATCTCACCGAAATATCAATTAGGA
TAATAATTTATTGCTTTGAGCTCAAAAAGTGGGATACTTTTTGAGAGTAT
AACTTTTCCGACTCCATTTTCTCTTAGATAAGATAAATGTATTTTTTCAG
TTGGGGGGAGGGCTCCAACATTTTCTATGATATGAAGTTGCTAGTTACAT
TATGTCACGACTCTTAATAgataataaaattattttgctGTTTTATCGAa
ctaacaaattaaaaatgaactAAGGAATTAAGGGTGCAAATTTTAAGAAA
TCACTTGAAACTTCAAAACAACACCTTTGATCGTTTGACCTTCTTCCAAA
TCTGTAGCTTTCCTGTATCCATCAAAAACTTCAGTTGGTAAAATCTTGAT
CTTTCCCTCTCTTTCCAAACGTTCTGCATGTTCCATTTGAGCAATCTTCA
TATAAATTTGACCAGTGCAAATGAAAATGTAGCCTCTTTTCTTCACAAGA
TCACATAATTGTGGAAGACAGTCTAAATTAGGATGCGAAGGAGTTGCAAA
GAAAACTCCCGATGAACAAACCATATCATAATTTTTCAATCCCAAAACAC
TGTGATCATCTGTACTTCCCAAACTGTAGTAATTTCTCATTCTGTCATTT
TTCTTGGCGATTTCAAGAAGTTCCAAACAAGGATCTAAACCATCGATCAT
TTTTGGGAATCCATGCAAATTGACCAGCGCGCTTGCCACAGGTCCAGTAC
CACAGCCATAATCTAAAACCGTCACACATTTGTTTTCCCCATACAAATCA
CTTATAATACTGGCAAGTATTTGAGGTGCTTTGAATTCTGTCTCGATCAT
CAATTGGTTCCAATTACTGGCGTATTTTTCATACAAATCTTGTTGTGTTT
GATATTCCTTCTCAAAATCCAACTCTTTATTGTTACGTGCCTCGTGAAAA
GCTTGTTGGAGGTCGGCATGGAACTCTTCTAAATTTGCAGCCATTTCAGA
TTTTAGTTGCGTAGGTTTAGTTGTTTATAATTGGCGATGTGATATAGCTC
TTTTTATGACCTCCTTATTTCTAAACCTCGTTGGTTTCTTAATAAACACC
ACAACAAGACAACACAAAAACATGAGAAATGGCTATAACAAGTCGATGTT
AT Coding sequence (CDS) from alignment at sc0000395:53588..55239 >TCONS_00021851 ID=TCONS_00021851|Name=TCONS_00021851|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at sc0000395:53588..55239 (Clytia hemisphaerica)
TTAAGAAATCACTTGAAACTTCAAAACAACACCTTTGATCGTTTGACCTT
CTTCCAAATCTGTAGCTTTCCTGTATCCATCAAAAACTTCAGTTGGTAAA
ATCTTGATCTTTCCCTCTCTTTCCAAACGTTCTGCATGTTCCATTTGAGC
AATCTTCATATAAATTTGACCAGTGCAAATGAAAATGTAGCCTCTTTTCT
TCACAAGATCACATAATTGTGGAAGACAGTCTAAATTAGGATGCGAAGGA
GTTGCAAAGAAAACTCCCGATGAACAAACCATATCATAATTTTTCAATCC
CAAAACACTGTGATCATCTGTACTTCCCAAACTGTAGTAATTTCTCATTC
TGTCATTTTTCTTGGCGATTTCAAGAAGTTCCAAACAAGGATCTAAACCA
TCGATCATTTTTGGGAATCCATGCAAATTGACCAGCGCGCTTGCCACAGG
TCCAGTACCACAGCCATAATCTAAAACCGTCACACATTTGTTTTCCCCAT
ACAAATCACTTATAATACTGGCAAGTATTTGAGGTGCTTTGAATTCTGTC
TCGATCATCAATTGGTTCCAATTACTGGCGTATTTTTCATACAAATCTTG
TTGTGTTTGATATTCCTTCTCAAAATCCAACTCTTTATTGTTACGTGCCT
CGTGAAAAGCTTGTTGGAGGTCGGCATGGAACTCTTCTAAATTTGCAGCC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021851-exon-sc0000395-1491911889:53588..55239 | TCONS_00021851-exon-sc0000395-1491911889:53588..55239 | Clytia hemisphaerica | exon |
| TCONS_00021851-exon-sc0000395-1510915933:53588..55239 | TCONS_00021851-exon-sc0000395-1510915933:53588..55239 | Clytia hemisphaerica | exon |
| TCONS_00021851-exon-sc0000395-1575043694:53588..55239 | TCONS_00021851-exon-sc0000395-1575043694:53588..55239 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000395 | supercontig | sc0000395:53588..55239 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR029063 | SAM-dependent_MTases |
Blast
The following BLAST results are available for this feature:
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