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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021850 ID=TCONS_00021850|Name=TCONS_00021850|organism=Clytia hemisphaerica|type=transcript|length=848bp
gaaatatataaaataagTATTACGCAGTAAATTGACTGCCAATAATTATA
TTAAGTATTTTGCCGAGAATATAATGTTAGTTGTTTCGTTCTAATGTAAT
CGACGATGTCTtttaaaatgcaaagttttttatCGAGATATGTTCAAGCG
ATCgcttgaaatttcaaaacaacacCTTTGATCGTTTGACCTTCTTCCAA
ATCTGTTGCTTTCCTGTATCCATCAAAAACTTCAGTTGGTAAAATCTTGA
TCTTTCCCTCTCTTTCCAAACGTTCTGCATGTTCCAATTCAGCAATTTTC
ATATAAATTTGACCAGTGCAAATGAAAATGTAGCCTCCTTTCTTCACAAG
ATCACATAATTGTGGAAGACAGTCTAGATTAGGATGCGAAGGAGTTGCGA
AGAAAACTCCCGATGAACAAACCATATCATAATTTTTTAACCCCAAAACA
CTATGGTCATCTTTACTTCCTAGATTGAAGTAATTTCtcattctgtcatt
ttttttggCGACTTCTAAAATCTCTTTGCATGGGTCCATCCCATCGATAG
TTTTATGAAATCCGTATTTTTGAACCAATAGTTCCGCTAAATATCCTGTT
CCACAACCGTAATCCAAGATGACCGCATCTTTATCCGGGAAAACTTCAGA
GATAACTTCAGCTAATCGCAAGGAATAGTTATATTCACCATCTTTCACAA
CTTGGTCCATATCATTTGCAAACTTGCTATACAAATCTTGTTGTGTTTTG
TATTCCACATTCGTGTCCAATTCTTTGTTATTTCGTGCTTCGAAAAAAGC
TGCTTGTAGATTTTCTTCATAATCTTCTAATACACCCATATTGAAATT Run BLAST on NCBI protein sequence of TCONS_00021850-protein >TCONS_00021850-protein ID=TCONS_00021850-protein|Name=TCONS_00021850-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
NFNMGVLEDYEENLQAAFFEARNNKELDTNVEYKTQQDLYSKFANDMDQV
VKDGEYNYSLRLAEVISEVFPDKDAVILDYGCGTGYLAELLVQKYGFHKT
IDGMDPCKEILEVAKKNDRMRNYFNLGSKDDHSVLGLKNYDMVCSSGVFF
ATPSHPNLDCLPQLCDLVKKGGYIFICTGQIYMKIAELEHAERLEREGKI
KILPTEVFDGYRKATDLEEGQTIKGVVLKFQAIA Run BLAST on NCBI transcript from alignment at sc0000395:52374..53221 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021850 ID=TCONS_00021850|Name=TCONS_00021850|organism=Clytia hemisphaerica|type=transcript|length=848bp|location=Sequence derived from alignment at sc0000395:52374..53221 (Clytia hemisphaerica)
AATTTCAATATGGGTGTATTAGAAGATTATGAAGAAAATCTACAAGCAGC
TTTTTTCGAAGCACGAAATAACAAAGAATTGGACACGAATGTGGAATACA
AAACACAACAAGATTTGTATAGCAAGTTTGCAAATGATATGGACCAAGTT
GTGAAAGATGGTGAATATAACTATTCCTTGCGATTAGCTGAAGTTATCTC
TGAAGTTTTCCCGGATAAAGATGCGGTCATCTTGGATTACGGTTGTGGAA
CAGGATATTTAGCGGAACTATTGGTTCAAAAATACGGATTTCATAAAACT
ATCGATGGGATGGACCCATGCAAAGAGATTTTAGAAGTCGccaaaaaaaa
tgacagaatgaGAAATTACTTCAATCTAGGAAGTAAAGATGACCATAGTG
TTTTGGGGTTAAAAAATTATGATATGGTTTGTTCATCGGGAGTTTTCTTC
GCAACTCCTTCGCATCCTAATCTAGACTGTCTTCCACAATTATGTGATCT
TGTGAAGAAAGGAGGCTACATTTTCATTTGCACTGGTCAAATTTATATGA
AAATTGCTGAATTGGAACATGCAGAACGTTTGGAAAGAGAGGGAAAGATC
AAGATTTTACCAACTGAAGTTTTTGATGGATACAGGAAAGCAACAGATTT
GGAAGAAGGTCAAACGATCAAAGgtgttgttttgaaatttcaagcGATCG
CTTGAACATATCTCGataaaaaactttgcattttaaaAGACATCGTCGAT
TACATTAGAACGAAACAACTAACATTATATTCTCGGCAAAATACTTAATA
TAATTATTGGCAGTCAATTTACTGCGTAATActtattttatatatttc Coding sequence (CDS) from alignment at sc0000395:52374..53221 >TCONS_00021850 ID=TCONS_00021850|Name=TCONS_00021850|organism=Clytia hemisphaerica|type=CDS|length=705bp|location=Sequence derived from alignment at sc0000395:52374..53221 (Clytia hemisphaerica)
AATTTCAATATGGGTGTATTAGAAGATTATGAAGAAAATCTACAAGCAGC
TTTTTTCGAAGCACGAAATAACAAAGAATTGGACACGAATGTGGAATACA
AAACACAACAAGATTTGTATAGCAAGTTTGCAAATGATATGGACCAAGTT
GTGAAAGATGGTGAATATAACTATTCCTTGCGATTAGCTGAAGTTATCTC
TGAAGTTTTCCCGGATAAAGATGCGGTCATCTTGGATTACGGTTGTGGAA
CAGGATATTTAGCGGAACTATTGGTTCAAAAATACGGATTTCATAAAACT
ATCGATGGGATGGACCCATGCAAAGAGATTTTAGAAGTCGccaaaaaaaa
tgacagaatgaGAAATTACTTCAATCTAGGAAGTAAAGATGACCATAGTG
TTTTGGGGTTAAAAAATTATGATATGGTTTGTTCATCGGGAGTTTTCTTC
GCAACTCCTTCGCATCCTAATCTAGACTGTCTTCCACAATTATGTGATCT
TGTGAAGAAAGGAGGCTACATTTTCATTTGCACTGGTCAAATTTATATGA
AAATTGCTGAATTGGAACATGCAGAACGTTTGGAAAGAGAGGGAAAGATC
AAGATTTTACCAACTGAAGTTTTTGATGGATACAGGAAAGCAACAGATTT
GGAAGAAGGTCAAACGATCAAAGgtgttgttttgaaatttcaagcGATCG
CTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021850-exon-sc0000395-1491911889:52374..53221 | TCONS_00021850-exon-sc0000395-1491911889:52374..53221 | Clytia hemisphaerica | exon |
| TCONS_00021850-exon-sc0000395-1510915933:52374..53221 | TCONS_00021850-exon-sc0000395-1510915933:52374..53221 | Clytia hemisphaerica | exon |
| TCONS_00021850-exon-sc0000395-1575043694:52374..53221 | TCONS_00021850-exon-sc0000395-1575043694:52374..53221 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000395 | supercontig | sc0000395:52374..53221 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR025714 | Methyltranfer_dom |
| IPR029063 | SAM-dependent_MTases |
Blast
The following BLAST results are available for this feature:
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