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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021804 ID=TCONS_00021804|Name=TCONS_00021804|organism=Clytia hemisphaerica|type=transcript|length=1102bpRun BLAST on NCBI protein sequence of TCONS_00021804-protein >TCONS_00021804-protein ID=TCONS_00021804-protein|Name=TCONS_00021804-protein|organism=Clytia hemisphaerica|type=polypeptide|length=334bp MLITTCCRCSHLRQFIRRIKYQTRHLTTTTQVCNMNIFDQQTKIHQKNMARun BLAST on NCBI transcript from alignment at sc0000395:172095..187552+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021804 ID=TCONS_00021804|Name=TCONS_00021804|organism=Clytia hemisphaerica|type=transcript|length=15458bp|location=Sequence derived from alignment at sc0000395:172095..187552+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000395:172095..187552+ >TCONS_00021804 ID=TCONS_00021804|Name=TCONS_00021804|organism=Clytia hemisphaerica|type=CDS|length=10050bp|location=Sequence derived from alignment at sc0000395:172095..187552+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021804 vs. Swiss-Prot (Human)
Match: NDUF5 (Arginine-hydroxylase NDUFAF5, mitochondrial OS=Homo sapiens GN=NDUFAF5 PE=1 SV=1) HSP 1 Score: 366.696 bits (940), Expect = 1.137e-124 Identity = 168/301 (55.81%), Postives = 226/301 (75.08%), Query Frame = 1
Query: 166 TTQVCNMNIFDQQTKIHQKNMAAQLPDHQVYDYLRDEVAERVADRLADITRFFPKALDIGAGKGYLAKQVHKDEVGHLYLLENSEKMLEHCTDVEVETTKIISNEEAILPFENDYFDLAVSSLSMHWINDLPGILSEVTRCLKDDGVFIGAIFGTDTLYELRCSLQLAELEREGGFGPHISPFTEMRDIGTLLQRAGMNLTTIDFDEITIDYPSIFELMEDLKGMGENNATWQRKGILHRDTLFAASAIYQAMYGNEDGSIPATYQILYMIGWKPSETQSKPLERGSATMNFKDLTNVVEL 1068
+T +NIFD+ K QKN AA+ P+ +DYL++EV R+ADR+ DI R FP ALD+G G+GY+A+ ++K+ +G + + +E L++ ++ E+ T ++++EE LPF+ + FDL VSSLS+HW+NDLP L ++ LK DGVFIGA+FG DTLYELRCSLQLAE EREGGF PHISPFT + D+G LL RAG N T+D DEI ++YP +FELMEDL+GMGE+N W RK +LHRDT+ AA+A+Y+ MY NEDGS+PATYQI YMIGWK E+Q++P ERGSAT++F +L + L
Sbjct: 38 STSPRTLNIFDRDLKRKQKNWAARQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGCGRGYIAQYLNKETIGKFFQADIAENALKNSSETEIPTVSVLADEE-FLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKPDGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISPFTAVNDLGHLLGRAGFNTLTVDTDEIQVNYPGMFELMEDLQGMGESNCAWNRKALLHRDTMLAAAAVYREMYRNEDGSVPATYQIYYMIGWKYHESQARPAERGSATVSFGELGKINNL 337 The following BLAST results are available for this feature:
BLAST of TCONS_00021804 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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