TCONS_00021781 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021781
Unique NameTCONS_00021781
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1273

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021781 ID=TCONS_00021781|Name=TCONS_00021781|organism=Clytia hemisphaerica|type=transcript|length=1273bp
CTTTTATAATAGACTCACTAAGCTTTCTGATTGAATTCTCTCTCTCTATA
CATCAAAgttaaaatgtttgaaaagattttgtttatgaGAAACTTATTCG
TGATAAGGTGTTGAATTTTGCTGAACTACTATTTTGCCAAAGTCTTGAAC
AGTGTATTTTGATTAAGATTTGaggtagaaaatgaaattgttgaagatCA
GTGGATATTTTGATTATTTGCGTGAAGGAGAAGAAGAGAGTGGAGAGGAA
GAACGAGATTTCTCTGAACAAAAATGTCTGGAAGTTCTGCAAAACCTCCA
AATGGAACAGTACGAAGAGATCGCGGACATTCCGATGAGTGCTTTGGATG
ACTTGTTCCTGGAGGTGATTGGTGGAGACAAGTACATCAAGATGGATCCC
AATCAAGAACAAGACGTCCTCGATCTCTTCGAAGAATGCACAgTCGATAA
GAAAGTAGACCTCGAGATGATGGCCAAAGTGTTGGGATATTTATTGAGGA
GGGATTGTTCGAAAAAGACAGCGTTATTAGTTGTGGATGTTCAGAATGAT
TTCATCTCTGGATCGTTAGCGTTGAAAAATTCACCAGCAAATCAAGATGG
GGAAGAAATAGTGGAAGTGGTGAACAACATCTTGGAAGAACATTCTTTTG
ATGCTGTTGTTTACACCACTGATTGGCATCCTGAAGACCATTGTTCTTTC
TACACAAACGTCTCTAAATACCCTCTTCATGAAAGTTCCACCGTCTCCGC
AGAAGAAGCAAAAGTGTTGGATAAGGTGGTGTATGACGGTGACAAACCAA
TCGAACAAGTCCTATGGCCTCCACATTGCATACAAGAGTCAGAGGGAGCT
GAGCTACATTCAGAACTAAATGTAAAAGAAGATTCGATCCGCATCTTAAA
AGGAACACACCCTCAGATCGACAGTTACAGTGCATTCTGGGATAACGGAC
GCTCGACACAAACAATTCTATTCCAAGAATTCATCGATCGTAAAATCACC
CATGTTTTTGTGTGTGGACTTGCGACGGACTTTTGTGTAGCATACACAGC
TTTCGATAGTAACACTCATGGTTTTCAAACCTTCGTCATCGAAGATGCAT
GTCGTGGTGTTTGCGATGAAAGCATCGAAGgtatgaaaacaaaagaaaag
cgAAATGGAATCAAAATCATTGAAAGTTCCGACATCAAAGACATTATCGA
AATTTAAAATGGAATGACAATAATAGTTGATAAGGCGATGTTAAATGGAT
GAGCTCAAAACTGTTGAGATGTA
Run BLAST on NCBI

transcript from alignment at sc0000394:215823..217755-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021781 ID=TCONS_00021781|Name=TCONS_00021781|organism=Clytia hemisphaerica|type=transcript|length=1933bp|location=Sequence derived from alignment at sc0000394:215823..217755- (Clytia hemisphaerica)
CTTTTATAATAGACTCACTAAGCTTTCTGATTGAATTCTCTCTCTCTATA
CATCAAAGTTAAAATGTTTGAAAAGATTTTGTTTATGAGAAACTTATTCG
TGATAAGGTGTTGAATTTTGCTGAACTACTATTTTGCCAAAGTCTTGAAC
AGTGTATTTTGATTAAGGTTTGTATTTGAATTGTTTAATGATATTTAATG
ATGGTTAATTATCGCGTAATTGATAAAAACCCATCGATAGATGACACAAA
AAACTGTCATGTTCAAGGAAGTGTTTGAAGTTATAGTCTGTGCATATTAT
CATGTGAGAAAATTTTTCATCTGTTGATTTATAGATTTGAGGTAGAAAAT
GAAATTGTTGAAGATCAGTGGATATTTTGATTATTTGCGTGAAGGAGAAG
AAGAGAGTGGAGAGGAAGAACGAGATTTCTCTGAACAAAAATGTCTGGAA
GTTCTGCAAAACCTCCAAATGTAAGTGACATTAAGTAGATAAGTCATTAT
GTATTACACTACTGAACTTGACAAAACACGAGACCACGAACTTCTAATCA
TTCCACACTTCTAATTCACCGGTGACTTATCTCATCATTCACTAGAAGAT
GACAAGGAATGATTTTGAACTCAAACAAATTGTCTCCGAGTCTCAAAGAA
ACTGCCATCAAATATTCCCAACATGAAGTAAATACTTCTTCCTTAGGGAA
CAGTACGAAGAGATCGCGGACATTCCGATGAGTGCTTTGGATGACTTGTT
CCTGGAGGTGATTGGTGGAGACAAGTACATCAAGATGGATCCCAATCAAG
AACAAGACGTCCTCGATCTCTTCGAAGAATGCACAGTGAGTCATTTCATT
GCACCATAGACCTGATGGTTAGCATTGACTAGTGGAGATGGGAGAATCTA
AACCACCCCCTGTCTCACTATTCTTTAAATCACGAAGTCATACTTTCGTT
CCAAGTTTGTTTTCTTGATTTTAGGTCGATAAGAAAGTAGACCTCGAGAT
GATGGCCAAAGTGTTGGGATATTTATTGAGGAGGGATTGTTCGAAAAAGA
CAGCGTTATTAGTTGTGGATGTTCAGAATGATTTCATCTCTGGATCGTTA
GCGTTGAAAAATTCACCAGCAAATCAAGATGGGGAAGAAATAGTGGAAGT
GGTGAACAACATCTTGGAAGAACATTCTTTTGATGCTGTTGTTTACACCA
CTGATTGGCATCCTGAAGACCATTGTTCTTTCTACACAAACGTCTCTAAA
TACCCTCTTCATGAAAGTTCCACCGTCTCCGCAGAAGAAGCAAAAGTGTT
GGATAAGGTGGTGTATGACGGTGACAAACCAATCGAACAAGTCCTATGGC
CTCCACATTGCATACAAGAGTCAGAGGGAGCTGAGCTACATTCAGAACTA
AATGTAAGAACGTTGAAAAGTCTTTTAAATATGTGTTGATTCTAAACTTC
GTTCTTTTTAATACATTTCTTAGAAACTCAAAGTATTCTTTTGTATTGGT
TGCCACAATTTTATCTTTATTTCACACACAGGTAAAAGAAGATTCGATCC
GCATCTTAAAAGGAACACACCCTCAGATCGACAGTTACAGTGCATTCTGG
GATAACGGACGCTCGACACAAACAATTCTATTCCAAGAATTCATCGATCG
TAAAATCACCCATGTTTTTGTGTGTGGACTTGCGACGGACTTTTGTGTAG
CATACACAGCTTTCGATAGTAACACTCATGGTTTTCAAACCTTCGTCATC
GAAGATGCATGTCGTGGTGTTTGCGATGAAAGCATCGAAGGTATGAAAAC
AAAAGAAAAGCGAAATGGAATCAAAATCATTGAAAGTTCCGACATCAAAG
ACATTATCGAAATTTAAAATGGAATGACAATAATAGTTGATAAGGCGATG
TTAAATGGATGAGCTCAAAACTGTTGAGATGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012222XLOC_012222Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021781-exon-sc0000394-1575043694:217589..217755TCONS_00021781-exon-sc0000394-1575043694:217589..217755Clytia hemisphaericaexon
TCONS_00021781-exon-sc0000394-1575043694:217286..217421TCONS_00021781-exon-sc0000394-1575043694:217286..217421Clytia hemisphaericaexon
TCONS_00021781-exon-sc0000394-1575043694:216921..217059TCONS_00021781-exon-sc0000394-1575043694:216921..217059Clytia hemisphaericaexon
TCONS_00021781-exon-sc0000394-1575043694:216353..216781TCONS_00021781-exon-sc0000394-1575043694:216353..216781Clytia hemisphaericaexon
TCONS_00021781-exon-sc0000394-1575043694:215823..216224TCONS_00021781-exon-sc0000394-1575043694:215823..216224Clytia hemisphaericaexon
TCONS_00021781-exon-sc0000394-1510915933:217589..217755TCONS_00021781-exon-sc0000394-1510915933:217589..217755Clytia hemisphaericaexon
TCONS_00021781-exon-sc0000394-1510915933:217286..217421TCONS_00021781-exon-sc0000394-1510915933:217286..217421Clytia hemisphaericaexon
TCONS_00021781-exon-sc0000394-1510915933:216921..217059TCONS_00021781-exon-sc0000394-1510915933:216921..217059Clytia hemisphaericaexon
TCONS_00021781-exon-sc0000394-1510915933:216353..216781TCONS_00021781-exon-sc0000394-1510915933:216353..216781Clytia hemisphaericaexon
TCONS_00021781-exon-sc0000394-1510915933:215823..216224TCONS_00021781-exon-sc0000394-1510915933:215823..216224Clytia hemisphaericaexon
TCONS_00021781-exon-sc0000394-1491911889:217589..217755TCONS_00021781-exon-sc0000394-1491911889:217589..217755Clytia hemisphaericaexon
TCONS_00021781-exon-sc0000394-1491911889:217286..217421TCONS_00021781-exon-sc0000394-1491911889:217286..217421Clytia hemisphaericaexon
TCONS_00021781-exon-sc0000394-1491911889:216921..217059TCONS_00021781-exon-sc0000394-1491911889:216921..217059Clytia hemisphaericaexon
TCONS_00021781-exon-sc0000394-1491911889:216353..216781TCONS_00021781-exon-sc0000394-1491911889:216353..216781Clytia hemisphaericaexon
TCONS_00021781-exon-sc0000394-1491911889:215823..216224TCONS_00021781-exon-sc0000394-1491911889:215823..216224Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000394supercontigsc0000394:215823..217755 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.3808	8.2683	5.0026	17.3978	3.42993	2.62493	3.53369	7.10019	0	2.14643	0.379124	1.51953	6.34225	0	1.956	1.25066	17.769	24.5732	6.54885	9.38737	6.40996	6.97947	5.91201	2.49227	4.35268	0.707471	0.811858	0.415339	0	3.2e-05
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021781 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top