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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021778 ID=TCONS_00021778|Name=TCONS_00021778|organism=Clytia hemisphaerica|type=transcript|length=4007bpRun BLAST on NCBI protein sequence of TCONS_00021778-protein >TCONS_00021778-protein ID=TCONS_00021778-protein|Name=TCONS_00021778-protein|organism=Clytia hemisphaerica|type=polypeptide|length=844bp MWYRGIVHNPSNDSSQVFFADFGNVDTVQNSHIMELDKQFFNLPIMAIECRun BLAST on NCBI transcript from alignment at sc0000394:129120..156492- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021778 ID=TCONS_00021778|Name=TCONS_00021778|organism=Clytia hemisphaerica|type=transcript|length=27373bp|location=Sequence derived from alignment at sc0000394:129120..156492- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000394:129120..156492- >TCONS_00021778 ID=TCONS_00021778|Name=TCONS_00021778|organism=Clytia hemisphaerica|type=CDS|length=15192bp|location=Sequence derived from alignment at sc0000394:129120..156492- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00021778 vs. Swiss-Prot (Human)
Match: TDRD1 (Tudor domain-containing protein 1 OS=Homo sapiens GN=TDRD1 PE=1 SV=2) HSP 1 Score: 206.453 bits (524), Expect = 7.511e-54 Identity = 213/803 (26.53%), Postives = 361/803 (44.96%), Query Frame = 1
Query: 1360 EDIEKLQSSLQAFYATNGTLCRKLAKNLSCCAKFSEDEMWYRGIVHNPS--NDSSQVFFADFGNVDTVQNSHIMELDKQFFNLPIMAIECKLSGIKPLTGQNYSVEANSKFDEYAMSKDSILTFVSKLDNGVAEVVLYEEDEKSVNQRLVNEGLVASTIL--------PQDQEVTKE----------MRXXXXXXXXXXTNNLKYVTPSLSVGQGEKVFISYSINPHHFYVNLASFSESLSQLMSQISSVYSGECNESRLSEPF--NVGQPCVAKFTEDDEHYRAEIKEIF-KTSVKVHFIDYGNFEEVDKSELKPLRKEFIKLPKQGLQCCLSGVEPIQASFTDEVCKKFEQIVMEKQLNMEVQEIVDNVFKVALIIDDNSQT---NVTQTLVLSG-------MVKEGKNPNKKADYGTKV---LSEEKFKECDLNVECYIDVAPVHVETPSQFCCHVVQNAVEFKNMTDDLNQFYAT-VQEDQSIIWKKLM--PCVALYNEDGCWYRAMIVSVQKKS-IEVTFVDFGNSAAVSANDIRPIFSEFLKLPAQVFVCSLADIEPTGKTWGADAVSSFENMVLDKHLAAYIKGKSESNSYSVLLYDTKTS-EKNFTQVLIEQGLG-NSLSKASKLGCERYFEPESTEQAV-----VTSVESYSEFNVQLFKS--APQLDALMEQL-YEIYSQMSESD--LQMIS-----------------PIIGQYCCSKFTEDDGWYRACIQEVHGKKLTVKYIDYGNSEHLDIDRIKVLNSDFDGSPKFALPCCLENHEQLKSLNTATETLL 3561
E + +L +SL+ YA K C AK++ D+ W R I+ N + V + D+GN + + + I L++ P AI+C ++ + P G N+S + M + + V L+ EVV + +V L N G + +L P Q+ KE + ++ + ++L +L+VG +++ P F+ L++L + +S C++ F +G C A+F+EDD+ YRA + + SV V ++DYGNFE + L P+ + ++LP Q ++C L+GV+P +T E +++V K + ++V + ++N V LI D S+T +V++ L+ +G MV + + K+ V ++ ++ +L V+ +DV + +P +F CHV++ K +DLN+ A Q+ +K + PC A + DG WYRA++ + ++V FVD+GN V+A+++R I S FL LP Q C LADI+ K W +A++ F+ V L A + +E N V L D T + + VLI++ L S S L +R + V +S E + + + K+ A L+ + L Y + M E+ L M++ P IG CC+K+T DD WYRA + + V Y DYGN E L + R++ + S P + C LE L LN ++ L+
Sbjct: 290 EYMNQLSASLKETYANVHEKDYIPVKGEVCIAKYTVDQTWNRAIIQNVDVQQKKAHVLYIDYGNEEIIPLNRIYHLNRNIDLFPPCAIKCFVANVIPAEG-NWSSDCIKATKPLLMEQYCSIKIVDILEE---EVVTF-----AVEVELPNSGKLLDHVLIEMGYGLKPSGQDSKKENADQSDPEDVGKMTTENNIVVDKSDLIPKVLTLNVGDEFCGVVAHIQTPEDFFCQQLQSGRKLAELQASLSKY----CDQLPPRSDFYPAIGDICCAQFSEDDQWYRASVLAYASEESVLVGYVDYGNFEILSLMRLCPIIPKLLELPMQAIKCVLAGVKPSLGIWTPEAICLMKKLVQNKIITVKVVDKLENSSLVELI--DKSETPHVSVSKVLLDAGFAVGEQSMVTDKPSDVKETSVPLGVEGKVNPLEWTWVELGVDQTVDVVVCVIYSPGEFYCHVLKEDALKK--LNDLNKSLAEHCQQKLPNGFKAEIGQPCCAFFAGDGSWYRALVKEILPNGHVKVHFVDYGNIEEVTADELRMISSTFLNLPFQGIRCQLADIQSRNKHWSEEAITRFQMCVAGIKLQARVVEVTE-NGIGVELTDLSTCYPRIISDVLIDEHLVLKSASPHKDLPNDRLVNKHELQVHVQGLQATSSAEQWKTIELPVDKTIQANVLEIISPNLFYALPKGMPENQEKLCMLTAELLEYCNAPKSRPPYRPRIGDACCAKYTSDDFWYRAVVLGTSDTDVEVLYADYGNIETLPLCRVQPITSSHLALPFQIIRCSLEG---LMELNGSSSQLI 1071 HSP 2 Score: 176.792 bits (447), Expect = 1.371e-44 Identity = 171/658 (25.99%), Postives = 292/658 (44.38%), Query Frame = 1
Query: 1327 LFC*SXPTGSKEDIEKLQSSLQA----------FYATNGTLCRKLAKNLSCCAKFSEDEMWYRG-IVHNPSNDSSQVFFADFGNVDTVQNSHIMELDKQFFNLPIMAIECKLSGIKPLTGQNYSVEANSKFDEYAMSKDSILTFVSKLDNGVAEVVLYEEDEK---SVNQRLVNEGLVAS-----TILPQDQEVTKEMRXXXXXXXXXXTNNLKYVTPSLSVGQGEKVFISYSINPHHFYVNLASFSESLSQLMSQISSVYSGECNESRLSEPFN--VGQPCVAKFTEDDEHYRAEIKEIFKTS-VKVHFIDYGNFEEVDKSELKPLRKEFIKLPKQGLQCCLSGVEPIQASFTDEVCKKFEQIVMEKQLNMEVQEIVDNVFKVAL---------IIDDNSQTNVTQTLVLSGMVKEGKNPN----KKADYGTKVL------SEEKFKECDLNVECYIDVAPVHVETPSQFCC---HVVQNAVEFKNMTDDLNQFYATVQEDQSIIWKKLMPCVALYNEDGCWYRAMIVSVQKKSIEVTFVDFGNSAAVSANDIRPIFSEFLKLPAQVFVCSLADIEPTGKTWGADAVSSFENMVLDKHLAAYIKGKSESNSYSVLLYDTKTSEKNFTQV---LIEQGLGNSLS--KASKLGCERYFE 3153
FC +G K + +LQ+SL FY G +C CA+FSED+ WYR ++ S +S V + D+GN + + + + + LP+ AI+C L+G+KP G ++ EA + +K + V KL+N + V L ++ E SV++ L++ G T P D + T + N L++ L V Q V + +P FY ++ E + ++ ++ + C + +L F +GQPC A F D YRA +KEI VKVHF+DYGN EEV EL+ + F+ LP QG++C L+ ++ +++E +F+ V +L V E+ +N V L II D + + LVL PN K + V S E++K +L V+ I + + +P+ F + +N + +T +L ++ + + C A Y D WYRA+++ +EV + D+GN + ++PI S L LP Q+ CSL + + + +N +L++++ +KG ++ N ++V + K SE V L+ GL +++ + S L E+ +
Sbjct: 509 FFCQQLQSGRK--LAELQASLSKYCDQLPPRSDFYPAIGDIC---------CAQFSEDDQWYRASVLAYASEESVLVGYVDYGNFEILSLMRLCPIIPKLLELPMQAIKCVLAGVKPSLGI-WTPEAICLMKKLVQNKIITVKVVDKLENS-SLVELIDKSETPHVSVSKVLLDAGFAVGEQSMVTDKPSDVKETS-----VPLGVEGKVNPLEWTWVELGVDQTVDVVVCVIYSPGEFYCHV--LKEDALKKLNDLNKSLAEHC-QQKLPNGFKAEIGQPCCAFFAGDGSWYRALVKEILPNGHVKVHFVDYGNIEEVTADELRMISSTFLNLPFQGIRCQLADIQSRNKHWSEEAITRFQMCVAGIKLQARVVEVTENGIGVELTDLSTCYPRIISD---VLIDEHLVLKSASPHKDLPNDRLVNKHELQVHVQGLQATSSAEQWKTIELPVDKTIQANVLEIISPNLFYALPKGMPENQEKLCMLTAELLEYCNAPKSRPPYRPRIGDACCAKYTSDDFWYRAVVLGTSDTDVEVLYADYGNIETLPLCRVQPITSSHLALPFQIIRCSLEGLMELNGSSSQLIIMLLKNFMLNQNVMLSVKGITK-NVHTVSV--EKCSENGTVDVADKLVTFGLAKNITPQRQSALNTEKMYR 1139 HSP 3 Score: 162.925 bits (411), Expect = 2.498e-40 Identity = 176/756 (23.28%), Postives = 325/756 (42.99%), Query Frame = 1
Query: 1972 NPHHFYVNLAS--FSESLSQLMSQISSVYSGECNESRLSEPFNVGQPCVAKFTEDDEHYRAEIKEIFKTSVKVH--FIDYGNFEEVDKSELKPLRKEFIKLPKQGLQCCLSGVEPIQASFTDEVCKKFEQIVMEKQLNMEVQEIV-DNVFKVALIID-DNSQTNVTQTLVLSGM---------VKEGKNPNKKADYGTKVLSEEKF---------KECDLNVECYIDVAPVHVETPSQFCCHVVQNAVEFKNMTDDLNQFYATVQEDQSIIWKKLMPCVALYNEDGCWYRAMIVS-VQKKSIEVTFVDFGNSAAVSANDIRPIFSEFLKLPAQVFVCSLADIEPTGKTWGADAVSSFENMVLDKHLAAYIKGKSESNSYSVLLYDTKTSEKNFTQVLIEQGLG------------NSLSKASKLGCERYFEP----------ESTEQAVVTSVESYSEFNVQLFKSAPQLDALMEQLYEIYSQMSESDLQMI----SPIIGQYCCSKFTEDDGWYRACIQEV-HGKKLTVKYIDYGNSEHLDIDRIKVLNSDFDGSPKFALPCCLENHEQLKSLNTATETLLDKELTVHFKSQEAPFKVEVLIDGKPLSKTLLESIKP---------------AAQPKTEVSINPQPSVTNGHAFATTIPKFPDTAT----------IGQSYPMYFLEAASPHEFFCQPTA---SEQELSTLMESIASYIAAGKTE-QFNGRPGDFALGMYKEDGGWYRVQILQKS 3996
+P FYV L S E ++QL + + Y+ + + P G+ C+AK+T D RA I+ + K H +IDYGN E + + + L + P ++C ++ V P + +++ + K + ++ME+ ++++ +I+ + V A+ ++ NS + L+ G KE + + D G K+ +E K LNV H++TP F C +Q+ + + L+++ + C A ++ED WYRA +++ ++S+ V +VD+GN +S + PI + L+LP Q C LA ++P+ W +A+ + +V +K + + K E++S L+ ++T + ++VL++ G + + LG E P + T VV + S EF + K DAL ++L ++ ++E Q + IGQ CC+ F D WYRA ++E+ + V ++DYGN E + D +++++S F P + C L + Q ++ + + E + ++ V +A VEV +G + T L + P +A P ++ P + N H + T++ + ++ LE SP+ F+ P ++++L L + Y A K+ + R GD Y D WYR +L S
Sbjct: 275 HPGDFYVQLYSSEVLEYMNQLSASLKETYANVHEKDYI--PVK-GEVCIAKYTVDQTWNRAIIQNVDVQQKKAHVLYIDYGNEEIIPLNRIYHLNRNIDLFPPCAIKCFVANVIPAEGNWSSDCIKATKPLLMEQYCSIKIVDILEEEVVTFAVEVELPNSGKLLDHVLIEMGYGLKPSGQDSKKENADQSDPEDVG-KMTTENNIVVDKSDLIPKVLTLNVGDEFCGVVAHIQTPEDFFCQQLQSGRKLAELQASLSKYCDQLPPRSDFYPAIGDICCAQFSEDDQWYRASVLAYASEESVLVGYVDYGNFEILSLMRLCPIIPKLLELPMQAIKCVLAGVKPSLGIWTPEAICLMKKLVQNKIITVKVVDKLENSSLVELIDKSETPHVSVSKVLLDAGFAVGEQSMVTDKPSDVKETSVPLGVEGKVNPLEWTWVELGVDQTVDVVVCVIYSPGEFYCHVLKE----DAL-KKLNDLNKSLAEHCQQKLPNGFKAEIGQPCCAFFAGDGSWYRALVKEILPNGHVKVHFVDYGNIEEVTADELRMISSTFLNLPFQGIRCQLADI-QSRNKHWSEEAITRFQMCVAGIKLQARV-VEVTENGIGVELTDLSTCYPRIISDVLIDEHLVLKSASPHKDL---PNDRLVNKHELQVHVQGLQATSSAEQWKTIELPVDKTIQANVLEIISPNLFYALPKGMPENQEKLCMLTAELLEYCNAPKSRPPYRPRIGDACCAKYTSDDFWYRAVVLGTS 1016 HSP 4 Score: 90.8929 bits (224), Expect = 3.739e-18 Identity = 85/302 (28.15%), Postives = 131/302 (43.38%), Query Frame = 1
Query: 3169 QAVVTSVESYSEFNVQLFKS--APQLDALMEQLYEIYSQMSESDLQMISPIIGQYCCSKFTEDDGWYRACIQ--EVHGKKLTVKYIDYGNSEHLDIDRIKVLNSDFDGSPKFALPCCLEN------HEQLKSLNTATETLLDKELTVH----FKSQEAPFKVEVLI--DGKPLSKTLLE---SIKPAAQ-PKTEVSINPQP----SVTNGHAFAT----TIPKFPDTATIGQSYPMYFLEAASPHEFFCQPTASEQELSTLMESIASYI-AAGKTEQFNGRPGDFALGMYKEDGGWYRVQIL 3987
+ VT + +F VQL+ S ++ L L E Y+ + E D P+ G+ C +K+T D W RA IQ +V KK V YIDYGN E + ++RI LN + D P A+ C + N + + L+++ ++ + + F VEV + GK L L+E +KP+ Q K E + P +T + IPK T +G + +P +FFCQ S ++L+ L S++ Y F GD + ED WYR +L
Sbjct: 267 KGTVTEFKHPGDFYVQLYSSEVLEYMNQLSASLKETYANVHEKDY---IPVKGEVCIAKYTVDQTWNRAIIQNVDVQQKKAHVLYIDYGNEEIIPLNRIYHLNRNIDLFPPCAIKCFVANVIPAEGNWSSDCIKATKPLLMEQYCSIKIVDILEEEVVTFAVEVELPNSGKLLDHVLIEMGYGLKPSGQDSKKENADQSDPEDVGKMTTENNIVVDKSDLIPKV-LTLNVGDEFCGVVAHIQTPEDFFCQQLQSGRKLAELQASLSKYCDQLPPRSDFYPAIGDICCAQFSEDDQWYRASVL 564 The following BLAST results are available for this feature:
BLAST of TCONS_00021778 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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