TCONS_00021775 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021775
Unique NameTCONS_00021775
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1818

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021775 ID=TCONS_00021775|Name=TCONS_00021775|organism=Clytia hemisphaerica|type=transcript|length=1818bp
TCGAAGATCCATTATTGAAATTTACTAGTGcgttcataaaaattgaaaat
tttggtgTGCGTCGTTCAGATGATTGAGTGTGGAAAGCTGGAAAGAAGAG
AGTTCGGGATGGGTTCAAAGGTGTCAGAAACTTGTATATAGAAGATAGTA
GAGTAATAAAATTGATTTGTGAAATCAATAAAGAACCAAAGTATTTATAT
CCAATATTCAAATGTACTGCTTTTAAGGAAGAAGATACTACCTTCCAGGC
TCCCATTTGTTCAgtctcaaaattgaaaatttctaatgTTGCAAGTGCTA
TTCTTCAAGAACTTAAACTTACGACAGAAAAAAGTTGGCCGGGTACAAAC
TTTTTTGGTTTGACATCATCTGCCTACAGAAAATTTCTTGAAGGAGAGGG
GAAAGAAAGATATAGTTTGATATCTCCTTCATCAGAAAACACTGAGATCA
TTTCTTCAATAGCGACAGAAGAAAATAATATGGGAACGACATCTGAAAAA
TCTGGTTTCGGTATTGACAATGTGAAAAGTACTAAACACTGTaaatgggt
tggtgtaattGAATATGGAGACACAAGCAGTGGTGTTAAACCGAttgctt
ttgaaaatttactAATTCATGTTGGATTTACATCTCAACGTTTAGTTAAT
TGTAAAGATAACACTAATAAGCTTGTTTCATGCAAAGTGATTTATAATGA
AATCTTAGGAGCAATATCCTTTCAACTTTCTACCGAAGATggccaaagtt
ttgaaaacacCAAAATATCGAAAGTAGTAAATACGTTCTTGATGCAGATT
GAATGTGTTAGTACAACCAATTGGTTTGGCTTTGATTTTTATGGTTTCAG
ACTTCAGCAAGTTAAGACCAatttaaaattgttaaaaccaACAAGATTCA
TCTGCCAAAAAGAACGAAAGCGACCAGAAAAAccattcaaaagttttgaa
aaatgtaagCAATATCTTGCATCGGAATGCTGTACCAACAAAAGATTTGT
CAAAGTCATCATACAAGACTGCTAGAAATCAAGCAATACATTCAGTTGTT
GATGCAACATGCTTTGGAGATATTAAGAgTTATATTGATTACCTTATTGA
AAACCACGGTGATATTGTTTTTGAAAGCATGATTGATAACAAAGAAATGT
CAAAGCGTTTGGACAAAAGTAAAGATATGCCGATAAGAcaaatttcggta
aaagatTCTTGTGAGATACTGGTTGGTAAATGTGATCTTTCACAGCGGGA
ATATAAAACTCTAAAATCACTATTACTTGGAAGTAATTTTCATTTAGCAA
GCTACTAGGATGCAAAGGATTATGCATATGAGCTTGATGTAGGAGAAATA
TATTACTTGAGTCACTGGCAAGATAAAAATGATTGCAAAATAAATTGCAT
GAACGCATCAACTGGTGTCATTTCATCATTAAACCAAGCAACATCCACAC
TCGAACTTTTTCAACGGTTTGAATTCATTGACTTAGGGAGAACAGCCAAA
TTAGTGGAAtatttgaattcaaaatctttgaagtaCCAAAATTTCGATAA
AGACAAGAGAACTATTTTTTTGAGAGACACTGGTGATAATTTTAGGGCAA
CAAAAAACTATCCAACTTAACAGATATCATTTAGTATTATGCACATGAAA
GAACTTTTGAATTCTCCTTATGGGGCAGTTTGCCACTTCTTTATTCAGAG
GAACCGAGAAAAGAGAAACACTGATAAGCCATGGTCAAGCGCACTTTAAT
AAATTAGAAGAGCTAGTTGAGAAAGGTGCAACCTTGACCTTACCTGATGG
CAATACGGAGCACTTcaa
Run BLAST on NCBI

protein sequence of TCONS_00021775-protein

>TCONS_00021775-protein ID=TCONS_00021775-protein|Name=TCONS_00021775-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MGTTSEKSGFGIDNVKSTKHCKWVGVIEYGDTSSGVKPIAFENLLIHVGF
TSQRLVNCKDNTNKLVSCKVIYNEILGAISFQLSTEDGQSFENTKISKVV
NTFLMQIECVSTTNWFGFDFYGFRLQQVKTNLKLLKPTRFICQKERKRPE
KPFKSFEKCKQYLASECCTNKRFVKVIIQDC
Run BLAST on NCBI

transcript from alignment at sc0000394:37915..40392-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021775 ID=TCONS_00021775|Name=TCONS_00021775|organism=Clytia hemisphaerica|type=transcript|length=2478bp|location=Sequence derived from alignment at sc0000394:37915..40392- (Clytia hemisphaerica)
TCGAAGATCCATTATTGAAATTTACTAGTGCGTTCATAAAAATTGAAAAT
TTTGGTGTGCGTCGTTCAGATGATTGAGTGTGGAAAGCTGGAAAGAAGAG
AGTTCGGGATGGGTTCAAAGGTGTCAGAAACTTGTATATAGAAGATAGTA
GAGTAATAAAATTGATTTGTGAAATCAATAAAGAACCAAAGTATTTATAT
CCAATATTCAAATGTACTGCTTTTAAGGAAGAAGATACTACCTTCCAGGC
TCCCATTTGTTCAGTCTCAAAATTGAAAATTTCTAATGTTGCAAGTGCTA
TTCTTCAAGAACTTAAACTTACGACAGAAAAAAGTTGGCCGGGTACAAAC
TTTTTTGGTTTGACATCATCTGCCTACAGAAAATTTCTTGAAGGAGAGGG
GAAAGAAAGATATAGTTTGATATCTCCTTCATCAGAAAACACTGAGATCA
TTTCTTCAATAGCGACAGAAGAAAATAATATGGGAACGACATCTGAAAAA
TCTGGTTTCGGTATTGACAATGTGAAAAGTACTAAACACTGTAAATGGGT
TGGTGTAATTGAATATGGAGACACAAGCAGTGGTGTTAAACCGATTGCTT
TTGAAAATTTACTAATTCATGTTGGATTTACATCTCAACGTTTAGTTAAT
TGTAAAGATAACACTAATAAGCTTGTTTCATGCAAAGTGATTTATAATGA
AATCTTAGGAGCAATATCCTTTCAACTTTCTACCGAAGATGGCCAAAGTT
TTGAAAACACCAAAATATCGAAAGTAGTAAATACGTTCTTGATGCAGATT
GAATGTGTTAGTACAACCAATTGGTTTGGCTTTGATTTTTATGGTTTCAG
ACTTCAGCAAGTTAAGACCAATTTAAAATTGTTAAAACCAACAAGATTCA
TCTGCCAAAAAGAACGAAAGCGACCAGAAAAACCATTCAAAAGTTTTGAA
AAATGTAAGCAATATCTTGCATCGGAATGCTGTACCAACAAAAGATTTGT
CAAAGTCATCATACAAGACTGCTAGAAATCAAGCAATACATTCAGTTGTT
GATGCAACATGCTTTGGAGATATTAAGAGTAAGTATTTCAAACCATTCTG
TTTGTCGGTAATGTAATGTAATTCATGTTGAGTTACCGTATTCCTTTCCT
TCGAATAAACGCCTGCGTTTATTGATTTTTTTTTTAGATTTTAAAGAGAC
ATTCAAAAGGGGGGAGCGTTTATTAAAAAAAAATCAAAAAGTGACAAAGA
TTTGAAAGAACTACCTAGTACAGACATGAATTTTGTTGACACCATCTTTT
TTTCTTTTTATTCGACACCTAAAATCTCATCTTCTTCATTATCTCCACTG
ATATCAATATCATCTTTCTTAGTCATAGTAAACTACATCCTCGTCAATTA
TGACAAAAATAGTCATGTTTCAAATTAACGTCTCCTCTAGGGGAGAGGCG
TTTAAAAGAGGGAGGCGTCTATTAAAGAATTTTTGGAAAAGGATGCATTT
TTTCGAGGAGGCGTTTATGCAAAGTAATACGGTATTTCGGTATGTGTTAT
TCATTATTGTCGCATTCACTTAAACAACTATATTCTACATCGTATAGAGA
AACAATATTTTTAAATTTTGATGTGTTATACCACAAATGCTGAATTAATT
TTCAATTTCACTTCAAATAATTATCAAAAAAAGTCTCAAAACTTCTTATA
GAAAAGTTATTTACTACTATTTATTTATTTTTCTTCAGGTTATATTGATT
ACCTTATTGAAAACCACGGTGATATTGTTTTTGAAAGCATGATTGATAAC
AAAGAAATGTCAAAGCGTTTGGACAAAAGTAAAGATATGCCGATAAGACA
AATTTCGGTAAAAGATTCTTGTGAGATACTGGTTGGTAAATGTGATCTTT
CACAGCGGGAATATAAAACTCTAAAATCACTATTACTTGGAAGTAATTTT
CATTTAGCAAGCTACTAGGATGCAAAGGATTATGCATATGAGCTTGATGT
AGGAGAAATATATTACTTGAGTCACTGGCAAGATAAAAATGATTGCAAAA
TAAATTGCATGAACGCATCAACTGGTGTCATTTCATCATTAAACCAAGCA
ACATCCACACTCGAACTTTTTCAACGGTTTGAATTCATTGACTTAGGGAG
AACAGCCAAATTAGTGGAATATTTGAATTCAAAATCTTTGAAGTACCAAA
ATTTCGATAAAGACAAGAGAACTATTTTTTTGAGAGACACTGGTGATAAT
TTTAGGGCAACAAAAAACTATCCAACTTAACAGATATCATTTAGTATTAT
GCACATGAAAGAACTTTTGAATTCTCCTTATGGGGCAGTTTGCCACTTCT
TTATTCAGAGGAACCGAGAAAAGAGAAACACTGATAAGCCATGGTCAAGC
GCACTTTAATAAATTAGAAGAGCTAGTTGAGAAAGGTGCAACCTTGACCT
TACCTGATGGCAATACGGAGCACTTCAA

Coding sequence (CDS) from alignment at sc0000394:37915..40392-

>TCONS_00021775 ID=TCONS_00021775|Name=TCONS_00021775|organism=Clytia hemisphaerica|type=CDS|length=546bp|location=Sequence derived from alignment at sc0000394:37915..40392- (Clytia hemisphaerica)
ATGGGAACGACATCTGAAAAATCTGGTTTCGGTATTGACAATGTGAAAAG
TACTAAACACTGTAAATGGGTTGGTGTAATTGAATATGGAGACACAAGCA
GTGGTGTTAAACCGATTGCTTTTGAAAATTTACTAATTCATGTTGGATTT
ACATCTCAACGTTTAGTTAATTGTAAAGATAACACTAATAAGCTTGTTTC
ATGCAAAGTGATTTATAATGAAATCTTAGGAGCAATATCCTTTCAACTTT
CTACCGAAGATGGCCAAAGTTTTGAAAACACCAAAATATCGAAAGTAGTA
AATACGTTCTTGATGCAGATTGAATGTGTTAGTACAACCAATTGGTTTGG
CTTTGATTTTTATGGTTTCAGACTTCAGCAAGTTAAGACCAATTTAAAAT
TGTTAAAACCAACAAGATTCATCTGCCAAAAAGAACGAAAGCGACCAGAA
AAACCATTCAAAAGTTTTGAAAAATGTAAGCAATATCTTGCATCGGAATG
CTGTACCAACAAAAGATTTGTCAAAGTCATCATACAAGACTGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012218XLOC_012218Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021775-proteinTCONS_00021775-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021775-exon-sc0000394-1575043694:39315..40392TCONS_00021775-exon-sc0000394-1575043694:39315..40392Clytia hemisphaericaexon
TCONS_00021775-exon-sc0000394-1575043694:37915..38654TCONS_00021775-exon-sc0000394-1575043694:37915..38654Clytia hemisphaericaexon
TCONS_00021775-exon-sc0000394-1510915933:39315..40392TCONS_00021775-exon-sc0000394-1510915933:39315..40392Clytia hemisphaericaexon
TCONS_00021775-exon-sc0000394-1510915933:37915..38654TCONS_00021775-exon-sc0000394-1510915933:37915..38654Clytia hemisphaericaexon
TCONS_00021775-exon-sc0000394-1491911889:39315..40392TCONS_00021775-exon-sc0000394-1491911889:39315..40392Clytia hemisphaericaexon
TCONS_00021775-exon-sc0000394-1491911889:37915..38654TCONS_00021775-exon-sc0000394-1491911889:37915..38654Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000394supercontigsc0000394:37915..40392 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.0283482	0	0	0.0230152	0	0	0.0293289	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0244733	0.0249344
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021775 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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