TCONS_00021773 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021773
Unique NameTCONS_00021773
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length843

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021773 ID=TCONS_00021773|Name=TCONS_00021773|organism=Clytia hemisphaerica|type=transcript|length=843bp
TGCTACTGTAAAAACCAAGTATTGgtGTACACATAAACGTTTATTAGCTG
GTAAGAGGAACCAAAATAAGAGGAAGAAAGAGAGAGACAAGCAAAAGAAA
CAAGAAGAATACCAAAAACGAATCCAAGCTGAAATGGAGAAAGATGAAAA
ACTCCGAAAACTGGAAAGTGACAATGCTCTTCTTACTAGAACattgaaat
catcaaaaaaccGAAAGCCCAATAAAGCATACTCTTTTGCTAAATCATTT
CTTGATAAATCACGTGACAAAAATGTGACAATCAACCAGACTCTGCGTAT
TACCGTTACCGAATTCAAGAAGACAGAATTGACCTTATTTCCAGGTTTGT
TGGGCGAAGGAGTTTATGGAAAAATCAGCTTAGGAAAACTTACAAACTTT
AAACAGACTGTGGCAGTCAAAGAAATAAGTGGGACAAAATCGAAGCTCGA
TTCTTTAGTAGAGGCTAAAATAATGATGGTTTTAAACGGACACAGAAATT
TACCATTGCTTTATGGCATCGTGAAACCCAACTTAATTTTACTTGAGTTT
ATTGGTGACGGAACAATGCCTAGCTctactttgaaaaattgtctCGCAGA
CAAACCGACGGAGATCAATTGGATTACAATCGTCATTGACATATGTGAAG
CTCTGAAACATATACACGATAATGGAATCTTGCATAATGACTTGCATCCA
AGAAACATTTTGCTACGTGAAAATAATCGATTTTGGCAAGGCTACGCTGG
TAGATGATCCAGTTATATATGATATACAAAAAGGAAGTCAGAAGCAAAAG
AAGTACAATACAAAACACATCCATTTGGCTTATGAATTGCGAA
Run BLAST on NCBI

protein sequence of TCONS_00021773-protein

>TCONS_00021773-protein ID=TCONS_00021773-protein|Name=TCONS_00021773-protein|organism=Clytia hemisphaerica|type=polypeptide|length=251bp
ATVKTKYWCTHKRLLAGKRNQNKRKKERDKQKKQEEYQKRIQAEMEKDEK
LRKLESDNALLTRTLKSSKNRKPNKAYSFAKSFLDKSRDKNVTINQTLRI
TVTEFKKTELTLFPGLLGEGVYGKISLGKLTNFKQTVAVKEISGTKSKLD
SLVEAKIMMVLNGHRNLPLLYGIVKPNLILLEFIGDGTMPSSTLKNCLAD
KPTEINWITIVIDICEALKHIHDNGILHNDLHPRNILLRENNRFWQGYAG
R
Run BLAST on NCBI

transcript from alignment at sc0000394:33410..34556-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021773 ID=TCONS_00021773|Name=TCONS_00021773|organism=Clytia hemisphaerica|type=transcript|length=1147bp|location=Sequence derived from alignment at sc0000394:33410..34556- (Clytia hemisphaerica)
TGCTACTGTAAAAACCAAGTATTGGTGAGTATTTTATACTTAGTTCTGAT
TTTCTATTTATTTTCTGGTAAGACTTTTCAAATACACGCTTTTTTTGCAG
TTTCTTCTTAAATTGTTCTTGCTGTTAGGTCAAATTTTACACTCCTGTTC
TTATAAAAAACGTGTATCTTAACGCGCAGGTCAGTGAGATTTTAATCGCT
TCATCGCCCTCTTTTACATGGCTTAGACACAACTGAAAACTTCACAGATT
TACGTTAAAAATGAGAAGGTTGATTATTTAAACTTTGCCTCTTTGATAAT
TTTTATCAATTTAATTTTACTTTTTTAGGTGTACACATAAACGTTTATTA
GCTGGTAAGAGGAACCAAAATAAGAGGAAGAAAGAGAGAGACAAGCAAAA
GAAACAAGAAGAATACCAAAAACGAATCCAAGCTGAAATGGAGAAAGATG
AAAAACTCCGAAAACTGGAAAGTGACAATGCTCTTCTTACTAGAACATTG
AAATCATCAAAAAACCGAAAGCCCAATAAAGCATACTCTTTTGCTAAATC
ATTTCTTGATAAATCACGTGACAAAAATGTGACAATCAACCAGACTCTGC
GTATTACCGTTACCGAATTCAAGAAGACAGAATTGACCTTATTTCCAGGT
TTGTTGGGCGAAGGAGTTTATGGAAAAATCAGCTTAGGAAAACTTACAAA
CTTTAAACAGACTGTGGCAGTCAAAGAAATAAGTGGGACAAAATCGAAGC
TCGATTCTTTAGTAGAGGCTAAAATAATGATGGTTTTAAACGGACACAGA
AATTTACCATTGCTTTATGGCATCGTGAAACCCAACTTAATTTTACTTGA
GTTTATTGGTGACGGAACAATGCCTAGCTCTACTTTGAAAAATTGTCTCG
CAGACAAACCGACGGAGATCAATTGGATTACAATCGTCATTGACATATGT
GAAGCTCTGAAACATATACACGATAATGGAATCTTGCATAATGACTTGCA
TCCAAGAAACATTTTGCTACGTGAAAATAATCGATTTTGGCAAGGCTACG
CTGGTAGATGATCCAGTTATATATGATATACAAAAAGGAAGTCAGAAGCA
AAAGAAGTACAATACAAAACACATCCATTTGGCTTATGAATTGCGAA

Coding sequence (CDS) from alignment at sc0000394:33410..34556-

>TCONS_00021773 ID=TCONS_00021773|Name=TCONS_00021773|organism=Clytia hemisphaerica|type=CDS|length=1512bp|location=Sequence derived from alignment at sc0000394:33410..34556- (Clytia hemisphaerica)
GTGTACACATAAACGTTTATTAGCTGGTAAGAGGAACCAAAATAAGAGGA
AGAAAGAGAGAGACAAGCAAAAGAAACAAGAAGAATACCAAAAACGAATC
CAAGCTGAAATGGAGAAAGATGAAAAACTCCGAAAACTGGAAAGTGACAA
TGCTCTTCTTACTAGAACATTGAAATCATCAAAAAACCGAAAGCCCAATA
AAGCATACTCTTTTGCTAAATCATTTCTTGATAAATCACGTGACAAAAAT
GTGACAATCAACCAGACTCTGCGTATTACCGTTACCGAATTCAAGAAGAC
AGAATTGACCTTATTTCCAGGTTTGTTGGGCGAAGGAGTTTATGGAAAAA
TCAGCTTAGGAAAACTTACAAACTTTAAACAGACTGTGGCAGTCAAAGAA
ATAAGTGGGACAAAATCGAAGCTCGATTCTTTAGTAGAGGCTAAAATAAT
GATGGTTTTAAACGGACACAGAAATTTACCATTGCTTTATGGCATCGTGA
AACCCAACTTAATTTTACTTGAGTTTATTGGTGACGGAACAATGCCTAGC
TCTACTTTGAAAAATTGTCTCGCAGACAAACCGACGGAGATCAATTGGAT
TACAATCGTCATTGACATATGTGAAGCTCTGAAACATATACACGATAATG
GAATCTTGCATAATGACTTGCATCCAAGAAACATTTTGCTACGTGAAAAT
AATCGATTTTGGCAAGGCTACGCTGGTAGATGAGCTACTGTAAAAACCAA
GTATTGGTGTACACATAAACGTTTATTAGCTGGTAAGAGGAACCAAAATA
AGAGGAAGAAAGAGAGAGACAAGCAAAAGAAACAAGAAGAATACCAAAAA
CGAATCCAAGCTGAAATGGAGAAAGATGAAAAACTCCGAAAACTGGAAAG
TGACAATGCTCTTCTTACTAGAACATTGAAATCATCAAAAAACCGAAAGC
CCAATAAAGCATACTCTTTTGCTAAATCATTTCTTGATAAATCACGTGAC
AAAAATGTGACAATCAACCAGACTCTGCGTATTACCGTTACCGAATTCAA
GAAGACAGAATTGACCTTATTTCCAGGTTTGTTGGGCGAAGGAGTTTATG
GAAAAATCAGCTTAGGAAAACTTACAAACTTTAAACAGACTGTGGCAGTC
AAAGAAATAAGTGGGACAAAATCGAAGCTCGATTCTTTAGTAGAGGCTAA
AATAATGATGGTTTTAAACGGACACAGAAATTTACCATTGCTTTATGGCA
TCGTGAAACCCAACTTAATTTTACTTGAGTTTATTGGTGACGGAACAATG
CCTAGCTCTACTTTGAAAAATTGTCTCGCAGACAAACCGACGGAGATCAA
TTGGATTACAATCGTCATTGACATATGTGAAGCTCTGAAACATATACACG
ATAATGGAATCTTGCATAATGACTTGCATCCAAGAAACATTTTGCTACGT
GAAAATAATCGATTTTGGCAAGGCTACGCTGGTAGATGAGCTACTGTAAA
AACCAAGTATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012216XLOC_012216Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021773-proteinTCONS_00021773-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021773-exon-sc0000394-1575043694:34533..34556TCONS_00021773-exon-sc0000394-1575043694:34533..34556Clytia hemisphaericaexon
TCONS_00021773-exon-sc0000394-1575043694:33410..34228TCONS_00021773-exon-sc0000394-1575043694:33410..34228Clytia hemisphaericaexon
TCONS_00021773-exon-sc0000394-1510915933:34533..34556TCONS_00021773-exon-sc0000394-1510915933:34533..34556Clytia hemisphaericaexon
TCONS_00021773-exon-sc0000394-1510915933:33410..34228TCONS_00021773-exon-sc0000394-1510915933:33410..34228Clytia hemisphaericaexon
TCONS_00021773-exon-sc0000394-1491911889:34533..34556TCONS_00021773-exon-sc0000394-1491911889:34533..34556Clytia hemisphaericaexon
TCONS_00021773-exon-sc0000394-1491911889:33410..34228TCONS_00021773-exon-sc0000394-1491911889:33410..34228Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000394supercontigsc0000394:33410..34556 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.119264	0.0719436	0.0673527	0.0471552	0	0	0	0.0744326	0	0.0635503	0.0340996	0.126024	0.0430567	0	0	0	0	0.064161	0	0	0.10724	0.0767303	0	0.0621097	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001245Ser-Thr/Tyr_kinase_cat_dom
IPR017441Protein_kinase_ATP_BS
IPR000719Prot_kinase_dom
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021773 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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