TCONS_00021768 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021768
Unique NameTCONS_00021768
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2101

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021768 ID=TCONS_00021768|Name=TCONS_00021768|organism=Clytia hemisphaerica|type=transcript|length=2101bp
gaaaaataatTAACCAATGAAACCACAATGAGGAGCAAAAGATCAAACAA
AGTGCAATCATTATGTAAACATCATCTAGATTTCAAACCCAACCCGTCAC
CAACATCTTCCACAGAGAAGTCTGGTCTGTTGAGAGTACACGTCATGAAG
GCTTCTGTTCACTCCCAGCATCAAAAACTTATGAACAATTTGAAGAAATC
TTGTCGTGAAAGCGAAAATTTCGGTCCCAATTCTTTGGTCAAACAATTAC
AGTCACTTGGCAAAATGTTTGCTCCTCCCAAAAATTCTGATCTTTCTCAG
ATAAATGAAACACCAGCACCGCAACCAGCTATGAAAAGAGACCAACCGTC
AGAGAGAGAATTGATCGAATCTTTAAATTATGTTTTACCCATCGAAAAGT
TCAatcatttcaaaatattgctaccCAAGTCGAAGCTTCACGTCACAACG
CCTGACGGTGAGGAAGTGATCGTGGAGCCGTGTGACAAACACACCAAAGT
CAAAGCGACGCACGAAACACACGAAGGCCTTATGAAGCGCCACAAAACGA
CCAAAGATGTCCTCCAACTTTTTTCTAAACAGAAATCGCGTCAATTGAAC
GCAAACAACTGGCGAAAAGACGATTCATTCTTCATTTATGTGTTCGAGAA
CAAAAAGTTCTTATTCGATAAATCAACCGGTGAAATCTCGTGTTTTCCAA
CGCCTGACGCAATGAAGCCAAAACCATCGAACAAAAGCAAAGGGGAGCCA
CCTCAGCTTGAACGAAATATTGTGGGCAAATCGTTTGGAACATTTATAAA
TGACTTTTGCAAGAAGCCTGTGGAAGGGAAAGAATACCCTTCAACCAATC
AATTTAACGTTCGAAGCAATCACAATATACAATTGCACGTGCTGCAACCT
GTAGAACAGAAAGCAAACTTCCGATTCGTCATTCATTCTTCTCCTTTTGG
TTCGTTCATTGAGAGAGCCGGTACTTCTCATATCGCAAcAGGAAATCGAA
AACAAACAGCCAGGAAGAATAACAGtattCTATTGTTCGTGGTTCGATTG
ATTACATAAAGGATCTGGAACGAAAAGTTCGAGAACAACTTGGTATTCCA
CAAGCATCAGAGGACCCTTTGGATGTCATAGAAATAGCTCAACCAACGGA
TCACTCCCAACACCCGATGGAACTTTCTGCTTCACAAGAAGACCACGAAG
ACATCACCGAGTACGAAGAGGAGGAAGTGTATGATAACgctttcgaagat
ttctttcaaCTCCTCTGCAATCCCATCTCCTCAACCAGAACAACAAACCA
TGGTGACAATGAGGGAAATCAAACGACCACCATTCAATTTCCCTCTAAAG
AAGAATGCTCTCTCTTCCAGTCCCTCTCTGCTATGGAACAGAATTTACTA
CGAGCAAGTCAAGAGGATGAACAGTTGGATCGATTTGTAAGTATCGAAGA
ACGATTCCAATTGAACTATAGTGACGTCAATCTGAACAGTTTACAAGGGG
AATATGTtatcaatgatgaaaatgaaagtgaggTTCAGGACGAAGTAATG
TATTCTGCAGAACAACCCAACATCATGAATTCACCTATCTCCAAAGACAC
TGATCGTGTTTTCCAATCACCAATCGCTCGAAATAATGAAATGCAATTAT
AAGACGTTGAGATGCTGATGATGTTTATTTGTTACTGTTGAACTCCTGTT
AACTTATTTTATTAGTCCTGTTTTAGTTTATGAATGTTTGAACTGTTACT
ACCTGGtctgtttcattttaaatacTTTAGTCTGTCGAAACTTGCTCCCT
TTTACCTAgcatatttttttatgataggattttaccaaatttctattttt
tgtcCATATGTAGAAATAAGAATATTGAAAAAAGTAAATCGATCTCATCG
AAATTGTCAATCCAAATATTTCAAGTTTTAAAGCTTAATCAATCCAATTT
CTTTTGAATGTATCATCTCGTCCCAACATCCTCTTTTCCAgggttcaaaa
taaaaaaaatgagataCAAAGTAAAAACTTTTCAACAAAAGGAATCGGTA
GATTGGAAAAACTGAATGATGCACATATTGAGGTGAGTAAAAGATTCTCC
C
Run BLAST on NCBI

transcript from alignment at sc0000394:258377..263313+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021768 ID=TCONS_00021768|Name=TCONS_00021768|organism=Clytia hemisphaerica|type=transcript|length=4937bp|location=Sequence derived from alignment at sc0000394:258377..263313+ (Clytia hemisphaerica)
gaaaaataatTAACCAATGAAACCACAATGAGGAGCAAAAGATCAAACAA
AGTGCAATCATTATGTAAACATCATCTAGATTTCAAACCCAACCCGTCAC
CAACATCTTCCACAGAGAAGTCTGGTCTGTTGAGAGTACACGTCATGAAG
GCTTCTGTTCACTCCCAGCATCAAAAACTTATGAACAATTTGAAGAAATC
TTGTCGTGAAAGCGAAAATTTCGGTCCCAATTCTTTGGTCAAACAATTAC
AGTCACTTGGCAAAATGTTTGCTCCTCCCAAAAATTCTGATCTTTCTCAG
ATAAATGGTATGTTTATTCATTCGTATTTAGTTCTGTGTCTGTACTTGTA
GTGAAATCCTTAAAATCAACTCCACTCTACACCATTTGAAGAAAGGATGT
AAGTAAAGTAAATGGTATCATTCAGACAAATCACTTTTTTTCAGAAACAC
CAGCACCGCAACCAGCTATGAAAAGAGACCAACCGTCAGAGAGAGAATTG
ATCGAATCTTTAAATTATGTTTTACCCATCGAAAAGTTCAatcatttcaa
aatattgctaccCAAGTCGAAGCTTCACGTCACAACGCCTGACGGTGAGG
AAGTGATCGTGGAGCCGTGTGACAAACACACCAAAGTCAAAGCGACGCAC
GAAACACACGAAGGCCTTATGAAGCGCCACAAAACGACCAAAGATGTCCT
CCAACTTTTTTCTAAACAGAAATCGCGTCAATTGAACGCAAACAACTGGC
GAAAAGACGATTCATTCTTCATTTATGTGTTCGAGAACAAAAAGTTCTTA
TTCGATAAATCAACCGGTGAAATCTCGTGTTTTCCAACGCCTGACGCAAT
GAAGCCAAAACCATCGAACAAAAGCAAAGGGGAGCCACCTCAGCTTGAAC
GAAATATTGTGGGCAAATCGTTTGGAACATTTATAAATGACTTTTGCAAG
AAGCCTGTGGAAGGGAAAGAATACCCTTCAACCAATCAATTTAACGTTCG
AAGCAATCACAATATACAATTGCACGTGCTGCAACCTGTAGAACAGAAAG
CAAACTTCCGATTCGTCATTCATTCTTCTCCTTTTGGTTCGTTCATTGAG
AGAGCCGGTACTTCTCATATCGCAAGTATGTTATCTTTTTGTTTGAACAT
CGAATATCCTGACGTGGATTAATAATTTTTATACTCTACTATATTGTACA
ATCATTGACAAAACCTATGGTACAAAGCCCACAAATGAGTTCCCTATCCC
CTCCCCCCCCCTAAACAATGTTGTTGGAGGGGGAGGTTATTGCCCTGTGT
CTAAATTTGACCGCCCAGAAATGTGCCATGATATATTGGCAACGATTGTA
GTTTGAAAGATAGGAAATGAAATATTATTAAAAGGCAATCACCACATGGG
GAACCCGATATCAGTACAAGCTAatcacttttttctttcagcAGGAAATC
GAAAACAAACAGCCAGGAAGAATAACAGGTGCTATACATAATTCTTTCTG
TGTTACCCAAATTCTCGAAAGAATCTATTATTGTGTGAAGTTGACTCTAA
ATCGTCTTTTCGAACATGGAAATTCAGACAGCCCAGTAATGAGAactgtt
ttcttcttctttccacAGAGATTACAAGGATCGTGAAGAAGAAAAGTTAA
TCGAGCTGATAGAGCAAATACCTAATCAGTATCTACCAGACAAAAAACAG
CGTAATAAGGTTCAGATTGAAGCAAGCTTGTTTAACAATTTATTTCAGTT
TTTGTCTAAAAACTCAACTAGTGTTGTATCAGTTCATTTATCAGTTACTT
AGTCAGCTCAGAAAATTTTCATATGACCCTGATGCATGTCCTAaacaatt
tcatgtttttttttttttcagtattCTATTGTTCGTGGTTCGATTGATTA
CATAAAGGATCTGGAACGAAAAGTTCGAGGTTAGTAACTTATTTAGAGGA
GTGACATGGTATTTTTCAGTCgtgttgatttaaaaaaaagtcatattCCG
TAAGgttttccttcgaaaatacaaaggatggttttccttcgaaaatacaC
ATCAaggttttccttcaaaaatacaaaggatggttttccttcgaaaatac
aTATCAaggttttccttcaaaaatacaaagaaaggttttttttcgaaaat
acaaaggatggttttccttcaaaaatacaaagcaaggttttccttcgaaa
atacaAAGCAaggttttccttcaaaaatacaatgaaaggtttttttcgaa
aatagaaATCAAGgttttccttcgaaaatacaAAGCAAGgttttccttcg
aaaatacaAAGCAGCGTTTTCCTTCGAAGATTACTGAACGAAAAACGAAA
AAGTGAAATGATTATCCTCCTTAGAACAACTTGGTATTCCACAAGCATCA
GAGGACCCTTTGGATGTCATAGAAATAGCTCAACCAACGGATCACTCCCA
ACACCCGATGGAACTTTCTGCTTCACAAGAAGACCACGAAGAGTGAGCTC
AAATTCCTTTTCTTAACGNGAACATCGAATATCCTGACGTGGATTAATAA
TTTTTATACTCTACTATATTGTACAATCATTGACAAAACCTATGGTACAA
AGCCCACAAATGAGTTCCCTATCCCCTCCCCCCCCCTAAACAATGTTGTT
GGAGGGGGAGGTTATTGCCCTGTGTCTAAATTTGACCGCCCAGAAATGTG
CCATGATATATTGGCAACGATTGTAGTTTGAAAGATAGGAAATGAAATAT
TATTAAAAGGCAATCACCACATGGGGAACCCGATATCAGTACAAGCTAat
cacttttttctttcagcAGGAAATCGAAAACAAACAGCCAGGAAGAATAA
CAGGTGCTATACATAATTCTTTCTGTGTTACCCAAATTCTCGAAAGAATC
TATTATTGTGTGAAGTTGACTCTAAATCGTCTTTTCGAACATGGAAATTC
AGACAGCCCAGTAATGAGAactgttttcttcttctttccacAGAGATTAC
AAGGATCGTGAAGAAGAAAAGTTAATCGAGCTGATAGAGCAAATACCTAA
TCAGTATCTACCAGACAAAAAACAGCGTAATAAGGTTCAGATTGAAGCAA
GCTTGTTTAACAATTTATTTCAGTTTTTGTCTAAAAACTCAACTAGTGTT
GTATCAGTTCATTTATCAGTTACTTAGTCAGCTCAGAAAATTTTCATATG
ACCCTGATGCATGTCCTAaacaatttcatgtttttttttatttcagtatT
CTATTGTTCGTGGTTCGATTGATTACATAAAGAATCTGGAACGAAAAGTT
CGAGGTTAGTAACTTATTTAGAGGAGTGACATGGTATTTTTCAGTCgtgt
tgatttaaaaaaaagtcatattCCGTAAGGTTTTCCTTCGAAAAGGACAA
AGGAtggttttccttcaaaaatacaaaggatggttttccttcaaaaatac
aaatcaaggttttccttcaaaaatacaaagaaaggttttttttcgaaaat
acaaaggatggttttccttcgaaaatacaAAGCAAGgttttccttcgaaa
atacaAAGCAAGgttttccttcgaaaatacaAAGCAaggttttccttcaa
aaatacaaagaaaggtttttttcgaaaatagaaATCAAGgttttccttcg
aaaatacaAAGCAAGGTTTTCCTTCGAAATTACAAAGCAGCGTTTTCCTT
CGAAGATTACtgaatgaaaaacgaaaaagcgAAATGATTATCCTCCTTAG
AACAACTTGGTATTCCACAAGTTGAAGCATCAGAGGACCCTTTGGATGTC
ATAGAAACAGCTCAACCAACGGATCACTCCCAACACCCGATGGAACTTTC
TGCTTCACAAGAAGACCACGAAGAGTGAGCTCAAATTCCTTTTCTTAACG
TTATACATACTTTTAATAgtgatttgttttattttcaaaattatcagtgt
tttcattttgaaagtAACTTTTCAATCGTTTTGAACTTTCTCTGATTATA
TTTGTTGTGATAGTTTCTGCCCACATCTCATTTTCAGCATCACCGAGTAC
GAAGAGGAGGAAGTGTATGATAACgctttcgaagatttctttcaaCTCCT
CTGCAATCCCATCTCCTCAACCAGAACAACAAACCATGGTGACAATGAGG
GAAATCAAACGACCACCATTCAATTTCCCTCTAAAGAAGAATGCTCTCTC
TTCCAGTCCCTCTCTGCTATGGAACAGAATTTACTACGAGCAAGTCAAGA
GGATGAACAGTTGGATCGATTTGTAAGTATCGAAGAACGATTCCAATTGA
ACTATAGTGACGTCAATCTGAACAGTTTACAAGGGGAATATGTtatcaat
gatgaaaatgaaagtgaggTTCAGGACGAAGTAATGTATTCTGCAGAACA
ACCCAACATCATGAATTCACCTATCTCCAAAGACACTGATCGTGTTTTCC
AATCACCAATCGCTCGAAATAATGAAATGCAATTATAAGACGTTGAGATG
CTGATGATGTTTATTTGTTACTGTTGAACTCCTGTTAACTTATTTTATTA
GTCCTGTTTTAGTTTATGAATGTTTGAACTGTTACTACCTGGtctgtttc
attttaaatacTTTAGTCTGTCGAAACTTGCTCCCTTTTACCTAgcatat
ttttttatgataggattttaccaaatttctattttttgtcCATATGTAGA
AATAAGAATATTGAAAAAAGTAAATCGATCTCATCGAAATTGTCAATCCA
AATATTTCAAGTTTTAAAGCTTAATCAATCCAATTTCTTTTGAATGTATC
ATCTCGTCCCAACATCCTCTTTTCCAgggttcaaaataaaaaaaatgaga
taCAAAGTAAAAACTTTTCAACAAAAGGAATCGGTAGATTGGAAAAACTG
AATGATGCACATATTGAGGTGAGTAAAAGATTCTCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012213XLOC_012213Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021768-exon-sc0000394-1491911889:258377..258683TCONS_00021768-exon-sc0000394-1491911889:258377..258683Clytia hemisphaericaexon
TCONS_00021768-exon-sc0000394-1510915933:258377..258683TCONS_00021768-exon-sc0000394-1510915933:258377..258683Clytia hemisphaericaexon
TCONS_00021768-exon-sc0000394-1575043694:258377..258683TCONS_00021768-exon-sc0000394-1575043694:258377..258683Clytia hemisphaericaexon
TCONS_00021768-exon-sc0000394-1491911889:258821..259501TCONS_00021768-exon-sc0000394-1491911889:258821..259501Clytia hemisphaericaexon
TCONS_00021768-exon-sc0000394-1510915933:258821..259501TCONS_00021768-exon-sc0000394-1510915933:258821..259501Clytia hemisphaericaexon
TCONS_00021768-exon-sc0000394-1575043694:258821..259501TCONS_00021768-exon-sc0000394-1575043694:258821..259501Clytia hemisphaericaexon
TCONS_00021768-exon-sc0000394-1491911889:259818..259854TCONS_00021768-exon-sc0000394-1491911889:259818..259854Clytia hemisphaericaexon
TCONS_00021768-exon-sc0000394-1510915933:259818..259854TCONS_00021768-exon-sc0000394-1510915933:259818..259854Clytia hemisphaericaexon
TCONS_00021768-exon-sc0000394-1575043694:259818..259854TCONS_00021768-exon-sc0000394-1575043694:259818..259854Clytia hemisphaericaexon
TCONS_00021768-exon-sc0000394-1491911889:260248..260305TCONS_00021768-exon-sc0000394-1491911889:260248..260305Clytia hemisphaericaexon
TCONS_00021768-exon-sc0000394-1510915933:260248..260305TCONS_00021768-exon-sc0000394-1510915933:260248..260305Clytia hemisphaericaexon
TCONS_00021768-exon-sc0000394-1575043694:260248..260305TCONS_00021768-exon-sc0000394-1575043694:260248..260305Clytia hemisphaericaexon
TCONS_00021768-exon-sc0000394-1491911889:260751..260868TCONS_00021768-exon-sc0000394-1491911889:260751..260868Clytia hemisphaericaexon
TCONS_00021768-exon-sc0000394-1510915933:260751..260868TCONS_00021768-exon-sc0000394-1510915933:260751..260868Clytia hemisphaericaexon
TCONS_00021768-exon-sc0000394-1575043694:260751..260868TCONS_00021768-exon-sc0000394-1575043694:260751..260868Clytia hemisphaericaexon
TCONS_00021768-exon-sc0000394-1491911889:262414..263313TCONS_00021768-exon-sc0000394-1491911889:262414..263313Clytia hemisphaericaexon
TCONS_00021768-exon-sc0000394-1510915933:262414..263313TCONS_00021768-exon-sc0000394-1510915933:262414..263313Clytia hemisphaericaexon
TCONS_00021768-exon-sc0000394-1575043694:262414..263313TCONS_00021768-exon-sc0000394-1575043694:262414..263313Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000394supercontigsc0000394:258377..263313 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	1.15021e-07	0	0	0	0	0	0	0	0	0	0	0	0	0	5.36724e-06	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021768 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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