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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021748 ID=TCONS_00021748|Name=TCONS_00021748|organism=Clytia hemisphaerica|type=transcript|length=617bp
tgaagaatgcACACTCTGTATCTTTCAAGTAAAATTAAggCTAACAAAAA
GATAGAAATGGCAGCAAAGATCCAGGAACAATTACAGAAAGAAATTGatg
tatttcaaaaaatgcagaaaGACTTGCAAAAATTAGTGACTGGAAGACAA
CAGTTGGATGTGCAATACAATGAAAATAAAGTTGTGAAAGATGAATTAGA
TCTTGTCGAACCTGATTCGAACGTTTACAAATTGACTGGACCTATTCTTG
TTAAACAGGATTTATCAGAAGCGAAATTAAACGTTGGCAAACGTCTAGAT
TATATACAAAGTGAACTGAAGCGTCATGAGAAATCAATCACAGACCTTCA
AGGTAAACAGGAGAAGAAGAAAGAATCTTTAACCAAACTGCAACAGCAAT
ATCAACAACTGTTACCAAAACAGGCTGCAAAATAGTTATATATCTTTCag
tttttgaaatctaggtACCTAATTTATAtccttttgtttttgaatacaTT
AAGGTCAAAACTGGCCAAGAAAAATTATTCATTGTTGTTGCTTTGAAACC
TTTATTGATGATAatttgctttttctttcttgaCATGACATTTGATCAGT
GCTTTGGATATTAAAAT Run BLAST on NCBI transcript from alignment at sc0000394:161131..163638+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021748 ID=TCONS_00021748|Name=TCONS_00021748|organism=Clytia hemisphaerica|type=transcript|length=2508bp|location=Sequence derived from alignment at sc0000394:161131..163638+ (Clytia hemisphaerica)
tgaagaatgcACACTCTGTATCTTTCAAGTAAAATTAAGTATGTTTACTA
AACGtagtcgtctaagaaaacagctttttttttttagaatcttccttaca
atctagtttttctatttataaaaagtagattgctgacgtgtggaaaggaa
tttcggcatgactgatccttttgtttcgataataacatcaaagcgggaat
taattttcttctcgattctttctttcctttttctttcttatcagttcaGG
CTTTCCCTCGCCACTctcaaagcgtggttagctcaagcggttagatcgTC
TGTCTCATATGCATGGGGCTCTGAGTACGATTCCGATGGgtgtccaattt
ttcaattcttcaattttcttttttNCGAGTTCGATTCCGATGGgtgtcca
atttttcaattcttcgattttctttttttaattctctttcttttataatg
aaggtcaattaaacaagtaactagcatatattacctccgctctagtgctg
caaataaggaaatttcagttggccggtaattttttgAGTGTAACGAGCAG
GGGGTCCGGTGGAACCATCTTAGAAAACTTTGTAGTATGTGATGACTTAG
CTTGGTTAAACACctattttagtttgaaaactgttcctcttttaattaga
agcgctatatattaagtatttatctaagcctctaatcttcaaattttaac
cggacaaaatgaaaaactgagccacagaatgaccggtagaaactacaaaa
tgaccggtaattaccggtcacctgccgttatttgcagcactgcgcTCTCT
GTctaaggtttagataagctatAATAGCATCACTTattaataagaacttt
tttaagtttttttttcttcaatcatttttttgccacaagcgattattcac
GGCTAagatatagaagaacgggtATAGGCGTTTGCGTCTGCGTTTGCTGA
CTGACAGTTTCACTTTCACTACTTTCACTAGATTCATTTTCAGCCAGTGA
GTGAGCGAGCGATTCTTTGTGAGAGAATCGTCAAATAACTTCTTTCAGAA
TCATTGAACTTCTCGTTTTATACTTAAAGGCAGAATAATAATCgatttcc
gggtcaaaatgtttggcacctgatccaatcgtttgcttatctttcttgcg
tggtcgttatttgaatttcagtattcaatgcttataaaatatgGTTTTTA
TAAGAGTATTAAACTCCTCACTATgagggaacagatcatagattcgattt
gaacgcgtaattactaatagcaattaacattacataacgcgtcgatatct
cttcactctAATGATAATGTGATATatacaaaattaaagtgatgagagaa
tcacaaaaaaaatcaagaattgaaaaattggacatCCATTGGAATCAAAC
TCGGAGCCCCATGCATATGAGACAGAcgatctaaccgcttgagctaacca
cgctttgagAGTGGTGAGGGAAAGCgtgaactgataagaaagaaaaagga
aagaaagaattgagaagaaaattaattcccgctttgatgttattatcgaa
acaaaaggatcagtcatgtcgaaattcctttccacacgtcagcagtaagg
aagattctaaaaaaaagctgttttcttagacgactaCGTTTGATGATCTT
TCAAAGTCGAATTCAAAGAAAATCTAACagttttgaacttttaaagatGA
TTATACTTCTTTGTGCGATTGTACTTGCTGTAATATACTTTTTTACTCAG
AACTCTTAGAATGTCTGACATCTTCTATGCAACAGCATGAGTCTGCTTTG
TAGATTAATTCATTACCATGATTATTAATTCTAATGTTCCAAAATCTTTt
cttaacttgaaaaattttcaataggTAAGCAAGTTTCTGCATATATAGCT
CACTAATgtttaggaaatatttttttaagggCTAACAAAAAGATAGAAAT
GGCAGCAAAGATCCAGGAACAATTACAGAAAGAAATTGatgtatttcaaa
aaatgcagaaaGACTTGCAAAAATTAGTGACTGGAAGACAACAGTTGGAT
GTGCAATACAATGAAAATAAAGTTGTGAAAGATGAATTAGATCTTGTCGA
ACCTGATTCGAACGTTTACAAATTGACTGGACCTATTCTTGTTAAACAGG
ATTTATCAGAAGCGAAATTAAACGTTGGCAAACGTCTAGATTATATACAA
AGTGAACTGAAGCGTCATGAGAAATCAATCACAGACCTTCAAGGTAAACA
GGAGAAGAAGAAAGAATCTTTAACCAAACTGCAACAGCAATATCAACAAC
TGTTACCAAAACAGGCTGCAAAATAGTTATATATCTTTCagtttttgaaa
tctaggtACCTAATTTATAtccttttgtttttgaatacaTTAAGGTCAAA
ACTGGCCAAGAAAAATTATTCATTGTTGTTGCTTTGAAACCTTTATTGAT
GATAatttgctttttctttcttgaCATGACATTTGATCAGTGCTTTGGAT
ATTAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021748-exon-sc0000394-1491911889:161131..161168 | TCONS_00021748-exon-sc0000394-1491911889:161131..161168 | Clytia hemisphaerica | exon |
| TCONS_00021748-exon-sc0000394-1510915933:161131..161168 | TCONS_00021748-exon-sc0000394-1510915933:161131..161168 | Clytia hemisphaerica | exon |
| TCONS_00021748-exon-sc0000394-1575043694:161131..161168 | TCONS_00021748-exon-sc0000394-1575043694:161131..161168 | Clytia hemisphaerica | exon |
| TCONS_00021748-exon-sc0000394-1491911889:163060..163638 | TCONS_00021748-exon-sc0000394-1491911889:163060..163638 | Clytia hemisphaerica | exon |
| TCONS_00021748-exon-sc0000394-1510915933:163060..163638 | TCONS_00021748-exon-sc0000394-1510915933:163060..163638 | Clytia hemisphaerica | exon |
| TCONS_00021748-exon-sc0000394-1575043694:163060..163638 | TCONS_00021748-exon-sc0000394-1575043694:163060..163638 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000394 | supercontig | sc0000394:161131..163638 + |
Blast
BLAST of TCONS_00021748 vs. Swiss-Prot (Human)
Match: PFD6 (Prefoldin subunit 6 OS=Homo sapiens GN=PFDN6 PE=1 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 1.144e-30 Identity = 54/109 (49.54%), Postives = 84/109 (77.06%), Query Frame = 1
Query: 58 MAAKIQEQLQKEIDVFQKMQKDLQKLVTGRQQLDVQYNENKVVKDELDLVEPDSNVYKLTGPILVKQDLSEAKLNVGKRLDYIQSELKRHEKSITDLQGKQEKKKESLT 384
MA IQ++LQ E++ +Q++QKDL K ++GRQ+L+ Q EN +VK+EL L++ + V+KL GP+LVKQ+L EA+ VGKRLDYI +E+KR+E + DL+ + E+++E+L
Sbjct: 1 MAELIQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLA 109
The following BLAST results are available for this feature:
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