TCONS_00021742 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021742
Unique NameTCONS_00021742
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length431

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021742 ID=TCONS_00021742|Name=TCONS_00021742|organism=Clytia hemisphaerica|type=transcript|length=431bp
ATCCCTTGCGGAATACCAATCGTCACCCCTAGCACCCTCGCCCAACAATG
CTCCTTGGTGGCGTGCCAGATATCATGCGGAGAGTCCATttggaatttca
aaaagttcatttAGTTCATTGATGTAACaatacatacttgaagaatACGT
TTAGGTTTCATCAGGAACTTATAAATCATTTTACGAAAACGTTGGAACGA
AAATCCATAGAGCCCTGGAGGATCAGCAATCTACTCCAGGGTGACGACGA
AATTGAAGCTGGAAGATCAACATTCTTCTCCATATTGAACGTATATCAAC
AACAGAATCAATTGAGCCCTGGAGGATTAACAATCTACTCCAGGGTGAAC
GAATGCAATAACATACCGAATATGTTGGATGCACAATGGCGGAAGCCAGT
CGACCAAAGTATCGTCTTTGACAGCATTTTT
Run BLAST on NCBI

transcript from alignment at sc0000393:243212..243642

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021742 ID=TCONS_00021742|Name=TCONS_00021742|organism=Clytia hemisphaerica|type=transcript|length=431bp|location=Sequence derived from alignment at sc0000393:243212..243642 (Clytia hemisphaerica)
AAAAATGCTGTCAAAGACGATACTTTGGTCGACTGGCTTCCGCCATTGTG
CATCCAACATATTCGGTATGTTATTGCATTCGTTCACCCTGGAGTAGATT
GTTAATCCTCCAGGGCTCAATTGATTCTGTTGTTGATATACGTTCAATAT
GGAGAAGAATGTTGATCTTCCAGCTTCAATTTCGTCGTCACCCTGGAGTA
GATTGCTGATCCTCCAGGGCTCTATGGATTTTCGTTCCAACGTTTTCGTA
AAATGATTTATAAGTTCCTGATGAAACCTAAACGTattcttcaagtatgt
attGTTACATCAATGAACTaaatgaactttttgaaattccaaATGGACTC
TCCGCATGATATCTGGCACGCCACCAAGGAGCATTGTTGGGCGAGGGTGC
TAGGGGTGACGATTGGTATTCCGCAAGGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012203XLOC_012203Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021742-exon-sc0000393-1491911889:243212..243642TCONS_00021742-exon-sc0000393-1491911889:243212..243642Clytia hemisphaericaexon
TCONS_00021742-exon-sc0000393-1510915933:243212..243642TCONS_00021742-exon-sc0000393-1510915933:243212..243642Clytia hemisphaericaexon
TCONS_00021742-exon-sc0000393-1575043694:243212..243642TCONS_00021742-exon-sc0000393-1575043694:243212..243642Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000393supercontigsc0000393:243212..243642 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.25842	0.00470486	0.169741	0.421543	1.87509	0.567595	0.801436	1.76021	1.68667	1.68493	0	0.686343	0.271859	1.96066	0.572378	2.30196	2.15377	2.50836	3.37197	2.89775	2.96147	1.29053	1.75297	1.40746	0	0	0.296398	2.03196	0.812342	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021742 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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