TCONS_00021739 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021739
Unique NameTCONS_00021739
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length244

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021739 ID=TCONS_00021739|Name=TCONS_00021739|organism=Clytia hemisphaerica|type=transcript|length=244bp
TGGGCAGGCGAGGCAAAATGTCACAGGGGGACTTGCTGACTGAGAAACAC
TTTCAGTATAGACCTTGAGCAGTCAACAAGTGTGGGAGCTCAGATGAGCG
AGACATCTGAAATATACTAATTAAATGAAATGCTATCCTGTTATACAATT
ATATCATTTCTCGTTCTAGAAATACTAAGaaataatatcaaataaaatac
aaaggGTACAAGGAGATACAAAGTATATACACAAAGACTAAAGG
Run BLAST on NCBI

transcript from alignment at sc0000393:235957..236200

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021739 ID=TCONS_00021739|Name=TCONS_00021739|organism=Clytia hemisphaerica|type=transcript|length=244bp|location=Sequence derived from alignment at sc0000393:235957..236200 (Clytia hemisphaerica)
CCTTTAGTCTTTGTGTATATACTTTGTATCTCCTTGTACcctttgtattt
tatttgatattatttCTTAGTATTTCTAGAACGAGAAATGATATAATTGT
ATAACAGGATAGCATTTCATTTAATTAGTATATTTCAGATGTCTCGCTCA
TCTGAGCTCCCACACTTGTTGACTGCTCAAGGTCTATACTGAAAGTGTTT
CTCAGTCAGCAAGTCCCCCTGTGACATTTTGCCTCGCCTGCCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012200XLOC_012200Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021739-exon-sc0000393-1491911889:235957..236200TCONS_00021739-exon-sc0000393-1491911889:235957..236200Clytia hemisphaericaexon
TCONS_00021739-exon-sc0000393-1510915933:235957..236200TCONS_00021739-exon-sc0000393-1510915933:235957..236200Clytia hemisphaericaexon
TCONS_00021739-exon-sc0000393-1575043694:235957..236200TCONS_00021739-exon-sc0000393-1575043694:235957..236200Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000393supercontigsc0000393:235957..236200 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.41953	0.9886	0	0	1.13748	5.39312	3.25329	3.04569	0	0	0	0	0	1.16515	1.06441	3.08396	0.633199	1.29802	1.99832	0	0	0.337644	2.46855	0.879252	0	0	1.15658	0	1.69617	0.953839
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021739 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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