TCONS_00021734 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021734
Unique NameTCONS_00021734
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length394

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021734 ID=TCONS_00021734|Name=TCONS_00021734|organism=Clytia hemisphaerica|type=transcript|length=394bp
GGAAAAGCTACGAGCTTTCTTGGAGGCAGCCGACATCAACACCAAACGAA
CGATGGAGACACTCAATCAAAAAGGTGTTTCAAATTGGCTGACATCCATC
CCTTTGAAGGAACAAGGTTTCGAGCTGACCAAGCAAGAGTTTTGGGATGC
CATCAGAATTCGATACAACTGGCCTCTCGACCGACTCCCATCAACTTGCG
CGTGTGGATCATCGTTCGATCTAGCACACGCGCTCTCTTGCAAGAAGGGA
GGATTCGTGTCTCTGAGACACAATGAAATTAGAGACATTACGTCCAAATT
GCTAGGAGAAGTGTGCGTAGATGTAAGAACTGAACCCCTATTAAACGAAC
TTAATAACGAAGATCTACCAAGACATGCAAATGTCTCACGCGAA
Run BLAST on NCBI

protein sequence of TCONS_00021734-protein

>TCONS_00021734-protein ID=TCONS_00021734-protein|Name=TCONS_00021734-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
EKLRAFLEAADINTKRTMETLNQKGVSNWLTSIPLKEQGFELTKQEFWDA
IRIRYNWPLDRLPSTCACGSSFDLAHALSCKKGGFVSLRHNEIRDITSKL
LGEVCVDVRTEPLLNELNNEDLPRHANVSRE
Run BLAST on NCBI

transcript from alignment at sc0000393:5367..5760

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021734 ID=TCONS_00021734|Name=TCONS_00021734|organism=Clytia hemisphaerica|type=transcript|length=394bp|location=Sequence derived from alignment at sc0000393:5367..5760 (Clytia hemisphaerica)
TTCGCGTGAGACATTTGCATGTCTTGGTAGATCTTCGTTATTAAGTTCGT
TTAATAGGGGTTCAGTTCTTACATCTACGCACACTTCTCCTAGCAATTTG
GACGTAATGTCTCTAATTTCATTGTGTCTCAGAGACACGAATCCTCCCTT
CTTGCAAGAGAGCGCGTGTGCTAGATCGAACGATGATCCACACGCGCAAG
TTGATGGGAGTCGGTCGAGAGGCCAGTTGTATCGAATTCTGATGGCATCC
CAAAACTCTTGCTTGGTCAGCTCGAAACCTTGTTCCTTCAAAGGGATGGA
TGTCAGCCAATTTGAAACACCTTTTTGATTGAGTGTCTCCATCGTTCGTT
TGGTGTTGATGTCGGCTGCCTCCAAGAAAGCTCGTAGCTTTTCC

Coding sequence (CDS) from alignment at sc0000393:5367..5760

>TCONS_00021734 ID=TCONS_00021734|Name=TCONS_00021734|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at sc0000393:5367..5760 (Clytia hemisphaerica)
TTCGCGTGAGACATTTGCATGTCTTGGTAGATCTTCGTTATTAAGTTCGT
TTAATAGGGGTTCAGTTCTTACATCTACGCACACTTCTCCTAGCAATTTG
GACGTAATGTCTCTAATTTCATTGTGTCTCAGAGACACGAATCCTCCCTT
CTTGCAAGAGAGCGCGTGTGCTAGATCGAACGATGATCCACACGCGCAAG
TTGATGGGAGTCGGTCGAGAGGCCAGTTGTATCGAATTCTGATGGCATCC
CAAAACTCTTGCTTGGTCAGCTCGAAACCTTGTTCCTTCAAAGGGATGGA
TGTCAGCCAATTTGAAACACCTTTTTGATTGAGTGTCTCCATCGTTCGTT
TGGTGTTGATGTCGGCTGCCTCCAAGAAAGCTCGTAGCTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012195XLOC_012195Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021734-exon-sc0000393-1491911889:5367..5760TCONS_00021734-exon-sc0000393-1491911889:5367..5760Clytia hemisphaericaexon
TCONS_00021734-exon-sc0000393-1510915933:5367..5760TCONS_00021734-exon-sc0000393-1510915933:5367..5760Clytia hemisphaericaexon
TCONS_00021734-exon-sc0000393-1575043694:5367..5760TCONS_00021734-exon-sc0000393-1575043694:5367..5760Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021734-proteinTCONS_00021734-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000393supercontigsc0000393:5367..5760 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.235328	0.639651	0.489128	0.849725	0.258615	0.817443	0.246553	0.692459	1.13122	0.400341	2.48876	0.826875	0.765248	0.944385	0.480192	1.1686	1.1517	2.12483	1.01293	1.06661	0	1.08527	0.219882	0.599713	1.85307	0.586533	0.262957	0.561269	0.425703	0.582789
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021734 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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