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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021732 ID=TCONS_00021732|Name=TCONS_00021732|organism=Clytia hemisphaerica|type=transcript|length=464bp
CTACATTCCGTTTTTACATTACCAAGATCTGGCGCGCCACACTTCACCTT
GGCTACTTCATCTCCACATCACTTTAAAAAAGATTCCAACAATCACTCAT
CAAACTTAAATATTTAACAGGTCATACAACACCTTCAGCAAAATGGATTC
TATTCTCCACataaaacaacaaaacacaacCGACCCCCAACAAGGGGGGA
GTGAGAGATTACTCGATGATCCCGCTCCGACACTATTACCGACATCACCG
ACACCGGTGAATAATACCGACGTCGTTGACATCAACAATAACGAGCCATC
AACTCCAAACACAACGCCCACACCGCCTCAAAAACCATCCACCTTCAAGG
ACAATATCTTGATCCTTACCACAACCATCTACGCAGCCATTTTAGGCTTT
CTAGGTGGCCAAAAACAAACCAACTTAAAAGACAATATCTTTGCCCTTGC
CACAACCATCTACG Run BLAST on NCBI protein sequence of TCONS_00021732-protein >TCONS_00021732-protein ID=TCONS_00021732-protein|Name=TCONS_00021732-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MDSILHIKQQNTTDPQQGGSERLLDDPAPTLLPTSPTPVNNTDVVDINNN
EPSTPNTTPTPPQKPSTFKDNILILTTTIYAAILGFLGGQKQTNLKDNIF
ALATTIY Run BLAST on NCBI transcript from alignment at sc0000393:257611..259001- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021732 ID=TCONS_00021732|Name=TCONS_00021732|organism=Clytia hemisphaerica|type=transcript|length=1391bp|location=Sequence derived from alignment at sc0000393:257611..259001- (Clytia hemisphaerica)
CTACATTCCGTTTTTACATTACCAAGATCTGGCGCGCCACACTTCACCTT
GGCTACTTCATCTCCACATCACTTTAAAAAAGATTCCAACAATCACTCAT
CAAACTTAAATATTTAACAGGTCATACAACACCTTCAGCAAAATGGATTC
TGTAAGTAATTCAAACATAAAGAATACCCTCTGTGAAACAATAAGATGTC
TTCATCTGGCACCTTAATGGAACTAATTCTCGGGGGGAATTTCCGCGTTT
GAGACCCACTTTTTGCCGAAATTCTTACATATTCCTAGGAGTTTATGAGG
ATTTTTAGGTAATAATTGTATTTCGCGGAAATTAGTTCCCTTAAGGAGGT
AAAAGTCTTTCGAAAACATTTCGAAAGTAGCCCTTTTTTTCACCCTTCTT
TGATTAGATTTCTAAAAAAATATTGTTAACGAACTCTCTCTCTGTCATGA
AGTTTGAACCACCTTATATCAGAATATCAATCATATCAATGACAACTACA
AATATAATGTTCCAGGTAGTCCACTTTAGGCTTTTTGATAGACTGGATAG
CGCGATTAAGCGAACTTTAATGAACTTAGTGTCATCAAGACTTATCAAAA
AGCAAAGCACAGCAAAACGTAGACTTTAGCCAAGGTCTTATGTTATCATT
CTTTCCACCCATAGATTCTCCACATAAAACAACAAAACACAACCGACCCC
CAACAAGGGGGGAGTGAGAGATTACTCGATGATCCCGCTCCGACACTATT
ACCGACATCACCGACACCGGTGAATAATACCGACGTCGTTGACATCAACA
ATAACGAGTAAGAAGTGTATTTCATATTTCCTCTAAGCCAATTCTTGATT
ATGCCGGTTTTTCGTGAGCCCTGCTAGAGTATTCAAAAATTTAGCATTGT
TTAGTATTGCATTCTATTTTATTGATTTGACTTTTCTAATTCTGTACAAA
ATTCCTATGCAAGGGCTCTGTTGTGGGAGATCGGTTAAGAATTTGCGTGC
TAAATAAATAACATTGTCTAGAAAATAAGTCCACTCTACTGAGCAGCAAC
GATCAAAAGTTTCTCTTTATCTCCCCGTTCTTTGTGTAAAAGAATATATA
ATATCTTACGCAGTCAATCATTCAAAAATCTAAAGCAAAATAGTTTAACC
TAGTGAACTCTTTGAGGTACTAATTCCAACATTAATGCTTAAACTCCTAT
CTTTATTTCTATATCATCCAGGCCATCAACTCCAAACACAACGCCCACAC
CGCCTCAAAAACCATCCACCTTCAAGGACAATATCTTGATCCTTACCACA
ACCATCTACGCAGCCATTTTAGGCTTTCTAGGTGGCCAAAAACAAACCAA
CTTAAAAGACAATATCTTTGCCCTTGCCACAACCATCTACG Coding sequence (CDS) from alignment at sc0000393:257611..259001- >TCONS_00021732 ID=TCONS_00021732|Name=TCONS_00021732|organism=Clytia hemisphaerica|type=CDS|length=963bp|location=Sequence derived from alignment at sc0000393:257611..259001- (Clytia hemisphaerica)
GCCATCAACTCCAAACACAACGCCCACACCGCCTCAAAAACCATCCACCT
TCAAGGACAATATCTTGATCCTTACCACAACCATCTACGCAGCCATTTTA
GGCTTTCTAGGTGGCCAAAAACAAACCAACTTAAAAGACAATATCTTTGC
CCTTGCCACAACCATCTACATTCTCCACATAAAACAACAAAACACAACCG
ACCCCCAACAAGGGGGGAGTGAGAGATTACTCGATGATCCCGCTCCGACA
CTATTACCGACATCACCGACACCGGTGAATAATACCGACGTCGTTGACAT
CAACAATAACGAATGGATTCTGCCATCAACTCCAAACACAACGCCCACAC
CGCCTCAAAAACCATCCACCTTCAAGGACAATATCTTGATCCTTACCACA
ACCATCTACGCAGCCATTTTAGGCTTTCTAGGTGGCCAAAAACAAACCAA
CTTAAAAGACAATATCTTTGCCCTTGCCACAACCATCTACATTCTCCACA
TAAAACAACAAAACACAACCGACCCCCAACAAGGGGGGAGTGAGAGATTA
CTCGATGATCCCGCTCCGACACTATTACCGACATCACCGACACCGGTGAA
TAATACCGACGTCGTTGACATCAACAATAACGAATGGATTCTGCCATCAA
CTCCAAACACAACGCCCACACCGCCTCAAAAACCATCCACCTTCAAGGAC
AATATCTTGATCCTTACCACAACCATCTACGCAGCCATTTTAGGCTTTCT
AGGTGGCCAAAAACAAACCAACTTAAAAGACAATATCTTTGCCCTTGCCA
CAACCATCTACATTCTCCACATAAAACAACAAAACACAACCGACCCCCAA
CAAGGGGGGAGTGAGAGATTACTCGATGATCCCGCTCCGACACTATTACC
GACATCACCGACACCGGTGAATAATACCGACGTCGTTGACATCAACAATA
ACGAATGGATTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021732-exon-sc0000393-1575043694:258851..259001 | TCONS_00021732-exon-sc0000393-1575043694:258851..259001 | Clytia hemisphaerica | exon |
| TCONS_00021732-exon-sc0000393-1575043694:258195..258337 | TCONS_00021732-exon-sc0000393-1575043694:258195..258337 | Clytia hemisphaerica | exon |
| TCONS_00021732-exon-sc0000393-1575043694:257611..257780 | TCONS_00021732-exon-sc0000393-1575043694:257611..257780 | Clytia hemisphaerica | exon |
| TCONS_00021732-exon-sc0000393-1510915933:258851..259001 | TCONS_00021732-exon-sc0000393-1510915933:258851..259001 | Clytia hemisphaerica | exon |
| TCONS_00021732-exon-sc0000393-1510915933:258195..258337 | TCONS_00021732-exon-sc0000393-1510915933:258195..258337 | Clytia hemisphaerica | exon |
| TCONS_00021732-exon-sc0000393-1510915933:257611..257780 | TCONS_00021732-exon-sc0000393-1510915933:257611..257780 | Clytia hemisphaerica | exon |
| TCONS_00021732-exon-sc0000393-1491911889:258851..259001 | TCONS_00021732-exon-sc0000393-1491911889:258851..259001 | Clytia hemisphaerica | exon |
| TCONS_00021732-exon-sc0000393-1491911889:258195..258337 | TCONS_00021732-exon-sc0000393-1491911889:258195..258337 | Clytia hemisphaerica | exon |
| TCONS_00021732-exon-sc0000393-1491911889:257611..257780 | TCONS_00021732-exon-sc0000393-1491911889:257611..257780 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000393 | supercontig | sc0000393:257611..259001 - |
Blast
The following BLAST results are available for this feature:
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