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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021728 ID=TCONS_00021728|Name=TCONS_00021728|organism=Clytia hemisphaerica|type=transcript|length=1124bp
AAACAAGCTCTGAACAGAATGTAtgcgaaaaaaataaataagaagcAAAA
CAcATAAAAacataaagaattaaaaaatccTAGAAATGGAATTGATGCTG
ACGTAAACATAAGAAGCCTAAAAACTGCAGAAAAGATGCAGTAAATCAAA
AGTCAGGTTTTAGATTATCCTAACGAAAGATCAACCTGCATTTGATATAT
CCTTAGATAATCGGATACATCTTTCTCCCTTTGTTGaagtttcaaagaaa
tttgttcTGTGCTTTTAATGAAAGCTGCTTGTTCAAGACGTGGTATCGTT
GTTAGTTCTTTTACAACTTGATTGAAAATGAGTTGAACTTCATCTGGCGT
AATGACATTCTCCTCCGATTTGATCTCGTTGATGAGAGCTTCAAAAATAC
AATGTTCAATAGGTACCCAGCTTTCCATACCCCCACCCTGGGAGTCAAAA
ATCTCTTGGGCGGAGGGCGTTTGAGTACCAACAGTGTTTGAAACGGTGGA
GCTTTTACACGTTGCGATTTTAGCCGCCTCGTGGGCGTAACGTTGTCGGT
ATGGAATTTTCGGTTTCTTCATACGTGGTCTTTCCATTCGTTTCCCAAAC
GGGTTATCACAACCCCGACAATCGCATTTATCACTACAACCTCGATCTAA
TCGAAAACAGATACATCgggttaaatatttcccgttctCTCTTGAGACGC
ACCGTCCTTGATTCGTTTTACCTGGTGTACCACGACCGCACCTACATTGA
GGTTCTTTGCCTTGTCTTTTGAAGTTAATGCTACGAATAGATGACACAGA
GGCTTTGCTACCGAGCCAAGCGGCAAAAAATCTTTGGAATCGATACACAA
CAAAGAAATGAGGTGAATTTAAATGGAATTTATCGGGGAAAATCGGGATC
ACCCAACAATGGTCTAAATCGGTGAACAAAGTAATAACAGCTCCTAATTT
ATCAGCTAACGCTTTGAGGACATCAAATTCTTCACTGTTGACGGGTAATT
CGGATTCTTTTTCCAGTTTTGATGTAGAATCGGATTCGTTTTCGGGTTCG
GTTGACATAGCAGCTATATCGACAACAGTCATTTTGTTTTCTTGGTCTAC
ATCCATTTGCTCACTGGTTGGctc Run BLAST on NCBI transcript from alignment at sc0000393:159635..162586- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021728 ID=TCONS_00021728|Name=TCONS_00021728|organism=Clytia hemisphaerica|type=transcript|length=2952bp|location=Sequence derived from alignment at sc0000393:159635..162586- (Clytia hemisphaerica)
AAACAAGCTCTGAACAGAATGTATGCGAAAAAAATAAATAAGAAGCAAAA
CACATAAAAACACAAAGAATTAAAAAATCCTAGAAATGGAATTGATGCTG
ACGTAAACATAAGAAGCCTAAAAACTGCAGTGAATCAAAAGTCAGGTTTT
AGATTATCCTAACGAAAGATCAACCTGCATTTGATATATCCTTAGATAAT
CGGATACATCTTTCTCCCTTTGTTGAAGTTTCAAAGAAATTTGTTCTGTG
CTTTTAATGAAAGCTGCTTGTTCAAGACGTGGTATCGTTGTTAGTTCTTT
TACAACTTGATTGAAAATGAGTTGAACTTCATCTGGCGTAATGACATTCT
CCTCCGATTTGATCTCGTTGATGAGAGCTTCAAAAATACAATGTTCAATA
GGTACCCAGCTTTCCATACCCCCACCCTGGGAGTCAAAAATCTCTTGGGC
GGAGGGCGTTTGAGTACCAACAGTGTTTGAAACGGTGGAGCTTTTACACG
TTGCGATTTTAGCCGCCTCGTGGGCGTAACGTTGTCGGTATGGAATTTTC
GGTTTCTTCATACGTGGTCTTTCCATTCGTTTCCCAAACGGGTTATCACA
ACCCCGACAATCGCATTTATCACTACAACCTCGATCTAATCGAAAACAGA
TACATCGGGTTAAATATTTCCCGTTTTCTCTTGAAACGCAACGTCCTTGG
TTCGTTTTACCCGGTGTACCACGACCACACCTACATTGAGGTTCTTTGCC
TTGTCTTTTGAAGTTGATGCTACGAATAGATGACACAGAGGCCTTGCTGC
CGAGCCAAGCGGCAAANTACCATGTTATCTTGTAAAATAAAATATGCAAT
TATTGTAAATAAGTTTTCAATAATTGATTGATACTGATACATACCTTTTT
CAAACTATAAACACAAAAAAACCAAGTTATCCAAACTTAATGAAGAAGCA
TTACCCATAATTAGTGTCTAGCAACAATTATCAATTTGTGTGTACGTAAT
TAGTATTTTAGCGGATGTCGAGTGTCCACTGTGGTATAAAATGATTTGTC
CGACAAATGTGGTGGAGAGCGCAGGATGTTTGTGAGTTGGTCACTCCTTC
AAGGAGTTGATTCTTCTAAGTAGAAAACAAAGGAAGAATATTTCCCGTTT
AAATGATTTGGTATTTAATAATATAATATCATCAAGATGAGCCGAGCATA
GTAGGACGGATCCCAAAATGATACATGTCAAGCCGGTCGTGCACATCAGG
AGTTGTGATAACAGAGGTTATAGGATTATTAGTAGAGTGTTAGTGGGTCA
AATTTCAAACCGAGTGTGAAGGTATTGGATTTGCGTGAGTTCTCAGGCTT
GGATGTAAAAGTTGTCGTTCTCATTTTTTTGAACCCTCTTGGGAGATGAA
TATTGTTTTGAGGCATGCTTATTAGTGGGAGTTTTAAATGACTTGGTGAT
ATAAAAATATCCATATTCATATTAACAAGTGGTGCGGTTACGATGAGCTT
CTATAAAAAGTCTCATTGATCACGATATTCAAGACTCTAAGTTCACCTCT
TAAGTAATAATAGGCTACGCACATCCCCAGAATCTATTTTGATATAGGAG
ATGCGTATCGTGTATGAAATTCTCGTCCGATTCCCTATATCAAATCATAT
CAGAGGGGATGCGTGCAGCCTACTTGGTAGTCCAGACATTAATATTCAAT
TTTCAATCATGCCTCAAAAACCGAAAAAAATGTTATGATGTTCAGGAAAT
TCAATGAATATGTTGAACTGAGATTCGCCTTTTTAAATCAGAAAGCTAAA
GGTACCTAATCAACAAAAAACAACAGTTAAACAAGCTATGAACAGAATGT
ATGCCAAAACAATAAATAAGAAGCAAAACACATAAAAACATAAAGAATTA
AAAAATCCTAGAAATGGAATTGATGCTGACGTAAACATAAGAAGCCTAAA
AACTGCAGAAAAGATGCAGTAAATCAAAAGTCAGGTTTTAGATTATCCTA
ACGAAAGATCAACCTGCATTTGATATATCCTTAGATAATCGGATACATCT
TTCTCCCTTTGTTGAAGTTTCAAAGAAATTTGTTCTGTGCTTTTAATGAA
AGCTGCTTGTTCAAGACGTGGTATCGTTGTTAGTTCTTTTACAACTTGAT
TGAAAATGAGTTGAACTTCATCTGGCGTAATGACATTCTCCTCCGATTTG
ATCTCGTTGATGAGAGCTTCAAAAATACAATGTTCAATAGGTACCCAGCT
TTCCATACCCCCACCCTGGGAGTCAAAAATCTCTTGGGCGGAGGGCGTTT
GAGTACCAACAGTGTTTGAAACGGTGGAGCTTTTACACGTTGCGATTTTA
GCCGCCTCGTGGGCGTAACGTTGTCGGTATGGAATTTTCGGTTTCTTCAT
ACGTGGTCTTTCCATTCGTTTCCCAAACGGGTTATCACAACCCCGACAAT
CGCATTTATCACTACAACCTCGATCTAATCGAAAACAGATACATCGGGTT
AAATATTTCCCGTTCTCTCTTGAGACGCACCGTCCTTGATTCGTTTTACC
TGGTGTACCACGACCGCACCTACATTGAGGTTCTTTGCCTTGTCTTTTGA
AGTTAATGCTACGAATAGATGACACAGAGGCTTTGCTACCGAGCCAAGCG
GCAAAAAATCTTTGGAATCGATACACAACAAAGAAATGAGGTGAATTTAA
ATGGAATTTATCGGGGAAAATCGGGATCACCCAACAATGGTCTAAATCGG
TGAACAAAGTAATAACAGCTCCTAATTTATCAGCTAACGCTTTGAGGACA
TCAAATTCTTCACTGTTGACGGGTAATTCGGATTCTTTTTCCAGTTTTGA
TGTAGAATCGGATTCGTTTTCGGGTTCGGTTGACATAGCAGCTATATCGA
CAACAGTCATTTTGTTTTCTTGGTCTACATCCATTTGCTCACTGGTTGGC
TC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021728-exon-sc0000393-1575043694:162534..162586 | TCONS_00021728-exon-sc0000393-1575043694:162534..162586 | Clytia hemisphaerica | exon |
| TCONS_00021728-exon-sc0000393-1575043694:159635..160705 | TCONS_00021728-exon-sc0000393-1575043694:159635..160705 | Clytia hemisphaerica | exon |
| TCONS_00021728-exon-sc0000393-1510915933:162534..162586 | TCONS_00021728-exon-sc0000393-1510915933:162534..162586 | Clytia hemisphaerica | exon |
| TCONS_00021728-exon-sc0000393-1510915933:159635..160705 | TCONS_00021728-exon-sc0000393-1510915933:159635..160705 | Clytia hemisphaerica | exon |
| TCONS_00021728-exon-sc0000393-1491911889:162534..162586 | TCONS_00021728-exon-sc0000393-1491911889:162534..162586 | Clytia hemisphaerica | exon |
| TCONS_00021728-exon-sc0000393-1491911889:159635..160705 | TCONS_00021728-exon-sc0000393-1491911889:159635..160705 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000393 | supercontig | sc0000393:159635..162586 - |
Blast
The following BLAST results are available for this feature:
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