|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021723 ID=TCONS_00021723|Name=TCONS_00021723|organism=Clytia hemisphaerica|type=transcript|length=3033bpRun BLAST on NCBI protein sequence of TCONS_00021723-protein >TCONS_00021723-protein ID=TCONS_00021723-protein|Name=TCONS_00021723-protein|organism=Clytia hemisphaerica|type=polypeptide|length=561bp MADKILPEQKNITTKDQSKTGETNKKMEVESLAEKLTQHNSQANPDIKEERun BLAST on NCBI transcript from alignment at sc0000393:50991..65387- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021723 ID=TCONS_00021723|Name=TCONS_00021723|organism=Clytia hemisphaerica|type=transcript|length=14397bp|location=Sequence derived from alignment at sc0000393:50991..65387- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000393:50991..65387- >TCONS_00021723 ID=TCONS_00021723|Name=TCONS_00021723|organism=Clytia hemisphaerica|type=CDS|length=11802bp|location=Sequence derived from alignment at sc0000393:50991..65387- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00021723 vs. Swiss-Prot (Human)
Match: RLP24 (Probable ribosome biogenesis protein RLP24 OS=Homo sapiens GN=RSL24D1 PE=1 SV=1) HSP 1 Score: 204.142 bits (518), Expect = 5.658e-60 Identity = 98/162 (60.49%), Postives = 124/162 (76.54%), Query Frame = 1
Query: 2041 MRIEKCYFCSSAVYPGHGISFVRNDSKLFKFCRRKCHKAFKMKRNPRKVRWTKAFRKSHGKELTVDPSFEFEKKRNIPLKYDRELWQKTIHAIRRVEEIKEKRQNLFIKNRLNKAKAIAKEVDRKEVQININLIKGPIKRKATIIQTQKIKTSEKPMQLMET 2526
MRIEKCYFCS +YPGHG+ FVRND K+F+FC+ KCHK FK KRNPRKVRWTKAFRK+ GKELTVD SFEFEK+RN P+KY RELW KTI A++RVEEIK+KRQ FI NRL K K + K D KEV+ NI+LI+ P+ K ++ + ++ ++ + + +
Sbjct: 1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQKVQDIKEVKQNIHLIRAPLAGKGKQLEEKMVQQLQEDVDMEDA 162 The following BLAST results are available for this feature:
BLAST of TCONS_00021723 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.