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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021702 ID=TCONS_00021702|Name=TCONS_00021702|organism=Clytia hemisphaerica|type=transcript|length=864bp
TCTACACCAACTGGGAAAATGgTCGTCGTCCAACGATTGAGGACGAATTC
TTAAATCCATGTATTGAAATAGACGTTACCGCAACTAATGGTTCATGGAG
TGCTTTAGGTGAAGGTGTTTCTGAGTCATGTCCTTTAGTCAAGACAGATT
ATGTGTGTAAAGTACCTTTAATTCCACCAATGGAAAGTTTCAATCATTTC
GTGTCTGATGATCGCACATCGTGGGAAAGTGCTAACGACAGTTGTTCGTT
ATTTCGAATGTCGCTGGTGATCATCAATGACGTGAATGAGAATAAGATGT
TATATGAACTGCTGCAACAAAATGGTCGCGTCAGAAAGGTATGGATTGGT
TTGTCTGGGAACAAGCAAGGAAAATACCGGTGGGTCAGTGATGACCTGTC
CGTATATCGGGACTGGTGTCCGGGACATCCCAATGATATCAAGATTATCT
CAGAAGTCAATGATTGTGTTACCTATACGATTGATAACGAAAAGGATGAT
GATAAAGGTTGTTTTAGTGTTGAGAAGTGTGACCAGGTATTACCTTTTAT
TTGCGAACGTGAAACCGAGGAGCAGATTTTGTTCCGGCAAAAGATATCGG
AATTGACCAAAACCATACGGGAAAATGGCGGACGCCCGTATTGTCCGAAT
TGTGTGAAGAGAGAAAACGAGAAACGAGAAGCAGCAAGACAGAAAGTTGT
CGATCAGAAGAAACaggagaaagaaaagaaattgagACGTGGAAGGTTAC
AGTGATAAGcgtttttctttaagaacattcaaaatttttaaaaccttcga
aattttcaggcttataagtatgttcttacgatgttcttaatacgcttagt
ttctttactcaGAA Run BLAST on NCBI transcript from alignment at sc0000393:165864..169064+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021702 ID=TCONS_00021702|Name=TCONS_00021702|organism=Clytia hemisphaerica|type=transcript|length=3201bp|location=Sequence derived from alignment at sc0000393:165864..169064+ (Clytia hemisphaerica)
TCTACACCAACTGGGAAAATGGTATGTTATTAAAACCGTTAAACCCCTTT
CaaaagcgaccgtagtgcagtagTAGAgcatccccagccgggtcatacaa
aagattcccaaaatggtacttgatgcctctctgtgtgatgctcagcaatt
aagaaaagggacaagggtaagtggagcaatccagggggAAAGAGTGACGC
CCTCCCCTACcctcgggtagatagctatcgaaagaggagcctccgactgc
ggtcgcagacttaatTACACCCTCTCTCATTTGGTATATGCGTGGATTTA
CTCTTATTTCGAATTAAATTTAcagtgtgtcccgaaaaaaaacggacaaa
tttttaaatgaagtaaaatccttaaaactcTTTATGTGAAACGGGCTTaa
aataattagaataattaaaataagattaaaattcTCTGCTCAATAGATAT
TACACCCATGTCTCTCACCCCGGTTAAACTTTATCCCACAGCGGGGATAA
agatttctattgaaatctcaatggggattgaaattctattgctccaaGAC
TAAAAATGGGATGGTttttgagtgcaatttttaaatggggatgaaatcaa
aatcaatttcccagtggggctaaaattctaAGGTATTTTTCTTACAGGGG
acgaaaattttgtcaaattttctagtgatgctgtgacacaggggtgtgat
attcaattcccaagataATTGAATAGGTTTTGGAGATTatgaaataatta
aataaataagtttatAAAATTTCGCGTAAATCATCGGAATTTTACTTCAT
TCAAAAATGTGTCCGCTTTTTCGGGACACTGTTTAGCTCCGACGGATTCA
TACCGAGTTAAATAATGATTTTGTAGTCCGTCCACTACCATCTGGATAAT
GTTTTTTACAAGCACTTTATTTTCACTATGTTTGGtgaggaaagaaaaaa
tttttaacgaTTACTCAAATGGAAAATGGACGGACTATATGTTTAGAACG
ATTCCGTGTAACGTCATTTTCACCTACGATcagccatttttctaagaaat
ggtAAAAAGAATATTTACAGGGTGATTTAGTGACACCTTGCTTAGCTCCA
AGCCTTTTAGTGTTTCCGTTTGGACCTGTGCATAGcttcttgtttgtttt
tatttcgtgGGTGGAAATCAGACAGTTAAGAACAAGCAGCTTGCTTGAGA
TTTGGCCTAATTGGATTTTGCAGAATCagtatatttgatatttttgtagg
TCGTCGTCCAACGATTGAGGACGAATTCTTAAATCCATGTATTGAAATAG
ACGTTACCGCAACTAATGGTTCATGGAGTGCTTTAGGTGAAGGTGTTTCT
GAGTCATGTCCTTTAGTCAAGACAGATTATGTGTGTAAAGTACCTTTAAT
TCCACCAATGGAAAGTTTCAATCATTTCGTGTCTGATGATCGCACATCGT
GGGAAAGTGCTAACGACAGTTGTTCGTTATTTCGAATGTCGCTGGTGATC
ATCAATGACGTGAATGAGAATAAGATGTTATATGAACTGCTGCAACAAAA
GTAAGTTTGAACTCCGTATGAGAAAAGctgttggatttttttttcttcac
agAAATTAACGTTGATCAAGTTTAATCTGACTTTTTGTCAGCCAAAACAA
TTCTTGTATTTTTTCATGAGATTTTCTTACCTCGGAAAGGTTTTCTAACC
ATAAAAGGGCTATACTTCATTGAAACATGGATTTATTATaaagactctgg
ataaacatcgaatgaaacggtggagagcgaagtattgtctttttattgtt
tcagaaaacaatcgatgtacaggctttgtccgcaaaggacaactgtcatg
gcggctcgaaggagtctgattttgaaaaatgattaatactcttttttcta
aaaagttctctgACTTTTTCTgatcgtacttttgctggctaaaagtttga
aaataaatgttaGAATACCAaccgaatacatttatgaaatctgatgtgag
aaaaacaccatcagacgagtaaaatcaaacaaaatgcttataatgacaag
aaattttgaattgggaatatctttccaatatttctccgagaagagctgag
attgatatatattagacgtgagtctcatagctccactgtggtatgaaaat
cttttagtGGCACGTGGTGGTGCGGTggcttttttgaggttgaagtttaa
gaatttctggtgtcaatattcaatttcttatacatagcatgtttttgcac
CTTTCTCGAAacttaaaacgtcataacgacgtataattagtaattaacta
gatgagtttgaatctcggaggagaacttaaagtctcatttgggaattgga
taagtgtattttgatgggaaaggcaattaaaatgctacgaaaaatctttt
aatggtggatggagggtgaacaataatgtcattactgcggacaaggcttg
tacatgagaaattggcaaaattcagctcgttgtttttccagtgtctataa
taattccatgattgaaattattctcgtatttttaaaggaaagttATCTGT
GTAATTCCATTTACTTCTATTTTATATGGAAGAAAAATCTTTCTACATAG
GCTCGATTgtgatttatgaaattttctaaCCATATTTCTCTGTCTTTTCA
TTCTTACAGTGGTCGCGTCAGAAAGGTATGGATTGGTTTGTCTGGGAACA
AGCAAGGAAAATACCGGTGGGTCAGTGATGACCTGTCCGTATATCGGGAC
TGGTGTCCGGGACATCCCAATGATATCAAGATTATCTCAGAAGTCAATGA
TTGTGTTACCTATACGATTGATAACGAAAAGGATGATGATAAAGGTTGTT
TTAGTGTTGAGAAGTGTGACCAGGTATTACCTTTTATTTGCGAACGTGAA
ACCGAGGAGCAGATTTTGTTCCGGCAAAAGATATCGGAATTGACCAAAAC
CATACGGGAAAATGGCGGACGCCCGTATTGTCCGAATTGTGTGAAGAGAG
AAAACGAGAAACGAGAAGCAGCAAGACAGAAAGTTGTCGATCAGAAGAAA
CaggagaaagaaaagaaattgagACGTGGAAGGTTACAGTGATAAGcgtt
tttctttaagaacattcaaaatttttaaaaccttcgaaattttcaggctt
ataagtatgttcttacgatgttcttaatacgcttagtttctttactcaGA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021702-exon-sc0000393-1491911889:165864..165884 | TCONS_00021702-exon-sc0000393-1491911889:165864..165884 | Clytia hemisphaerica | exon |
| TCONS_00021702-exon-sc0000393-1510915933:165864..165884 | TCONS_00021702-exon-sc0000393-1510915933:165864..165884 | Clytia hemisphaerica | exon |
| TCONS_00021702-exon-sc0000393-1575043694:165864..165884 | TCONS_00021702-exon-sc0000393-1575043694:165864..165884 | Clytia hemisphaerica | exon |
| TCONS_00021702-exon-sc0000393-1491911889:167113..167413 | TCONS_00021702-exon-sc0000393-1491911889:167113..167413 | Clytia hemisphaerica | exon |
| TCONS_00021702-exon-sc0000393-1510915933:167113..167413 | TCONS_00021702-exon-sc0000393-1510915933:167113..167413 | Clytia hemisphaerica | exon |
| TCONS_00021702-exon-sc0000393-1575043694:167113..167413 | TCONS_00021702-exon-sc0000393-1575043694:167113..167413 | Clytia hemisphaerica | exon |
| TCONS_00021702-exon-sc0000393-1491911889:168523..169064 | TCONS_00021702-exon-sc0000393-1491911889:168523..169064 | Clytia hemisphaerica | exon |
| TCONS_00021702-exon-sc0000393-1510915933:168523..169064 | TCONS_00021702-exon-sc0000393-1510915933:168523..169064 | Clytia hemisphaerica | exon |
| TCONS_00021702-exon-sc0000393-1575043694:168523..169064 | TCONS_00021702-exon-sc0000393-1575043694:168523..169064 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000393 | supercontig | sc0000393:165864..169064 + |
Blast
The following BLAST results are available for this feature:
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