|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021695 ID=TCONS_00021695|Name=TCONS_00021695|organism=Clytia hemisphaerica|type=transcript|length=1839bp
ACATGGTTTTCAAACTAACGCTGGATCGATAGTAAGATTTGGCGcaacaa
tttgaaaaattaaaaaacaaataaagtgctagattcaatccgttaAATAA
AAAGAGTTTGAACTGTTAGACTACAATACCAAAGGTTGTTGTTTCATAAG
AATCAAATCTGACTGTATTATATCACCTTTTCTCTTTCTATACAGATCCT
CTTGGGGCCGTGTGGCCAGTGATCGGAATATTGGTAGAATCCTTATTATT
GTTTGTCATAATCTTCGTGTACGAATATACTAAAGCCAAACCGAGTGATG
TCACAGTCAAAGTAAGCAAATCCGGTGGAGAGATGAAACTCGTACAATCA
TGAAAATCTTCACCAAATCGATGAATTcaatagactttttcataaattac
gtcacgatcgaacatcacttgcctcgtattcaatcAATTACAATGGTGAT
TTTGTCCCTTGAGatattgaatgattttttatgaatagtaagtagtttta
ataaaaatcagctgggagttaatcactatggcaataatttcaaaatgagg
caagtaatgttcgtgacgtaatttatgaaaaggtctatacttaaccactc
ttttttgaaaaaagtaccaagtcattttacttttttgcgCCAAAGACCTC
AGGACCAAAGACTTTGAAGGTAAAATTCTCTCGGGTGGTAGAGGACGATT
GACATCAAATTCTTTCTACAGGATTTTGTCTTTTTGCGACTGTTATAGTA
CAATTTTTCATTTGCttagaatttcatgctctatccgGTCTGATAAGGac
catttttctttatttcaaatttggatATCGTCAAGATTCTAATTTTATTT
AAAGATTTCCTTGAAGCTCTTGGGACTGCACTGTTTTGGTTGGAAAGCGA
CGAAGCAAACCTTTACTCTTTATCTATTGAAGTATTTAGTTTAAAACCTC
AAAGgggctagagatgaatctttaacctttctcaagcaataAAATGTGAA
GCCTTAAGACTTGCGCCGCATTTAGAACGAGAGATTGAATCtaacacttt
ctttgttttttttgtggcatatttttcgaaatctgaaaCTTTCAATCTGA
CGTTGGAGCGAAAACGCGGGTACGGgatttggatgggaaataagtggttt
catttcccatccaagagtttcgAAGGCATAAAGTCAAGGActcgaaaaca
atcaaaatgctaaATCCAAACCGTCTGAAAGGAGTTTCTCCCGTTGCTTC
TTTGGGATTTAAGGAAATCTATCTTTCAGTGTACTTTATTTTAATGTGCT
TATCTTTTACGTCGTTTTTTGTTGCTTATTATATAAATTAAATATTCGAC
TGTACATACCCTAGTTAAACTTTCTAGCCTCCAACAAAATATTTGTATTT
GTGATAATATGTGCTATTTTAGAAATTCTGAATATTATagacaaaataca
aaataaatatacaaaaaaaacaCTAAATATTATTTACAATCATTACCTAT
AAAATATCTTTCAAGGTCATTCGCCCGAGGGAGGCACTTAAGCAAAATTT
AGGTACGGGGACGCACCGCTGGTCAGCGTCCCTTTTTTCAGCTCCGGAAA
TATATGGCATGGTCCAAAAATTATTAACTTCCAAGATATGTATCTGACAT
TTTTAAAACTCAAGATAATGCCCCCGCTCCCGGGTCATTGGTTAAATAAA
ATCCTCTACGAAAATTTTCTATCGAATTGCAAAATTGCACAAAATATTGT
CccaagtggaaaattatactccaatttttgtccctgcTGAAAATAAATCA
GGTAAGCAAATCCCCACCGCAaattattgtgctattttt Run BLAST on NCBI transcript from alignment at sc0000393:92655..95574+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021695 ID=TCONS_00021695|Name=TCONS_00021695|organism=Clytia hemisphaerica|type=transcript|length=2920bp|location=Sequence derived from alignment at sc0000393:92655..95574+ (Clytia hemisphaerica)
ACATGGTTTTCAAACTAACGCTGGATCGATAGTAAGATTTGGCGcaacaa
tttgaaaaattaaaaaacaaataaagtgctagattcaatccgttaAATAA
AAAGAGTTTGAACTGTTAGACTACAATACCAAAGGTTGTTGTTTCATAAG
AATCAAATCTGACTGTATTATATCACCTTTTCTCTTTCTATACAGATCCT
CTTGGGGCCGTGTGGCCAGTGATCGGAATATTGGTAGAATCCTTATTATT
GTTTGTCATAATCTTCGTGTACGAATATACTAAAGCCAAACCGAGTGATG
TCACAGTCAAAGGTATGTTATATCTTTTTCTTCATGCCCATGTCTCTGTG
CCCCGCCATGAGAATCTTTAGTTTGGCTAGCAGAGGATAAAATGCAATGA
TGAAAAATCGTCTCTACTTGTGGCAGGGCTTCAAATTCTATCATTTGTAA
GTCTTTTCCAATAGCAATAGGGATCCTATTGGTTCTATTTTCTCCACCTA
TCTCCCACTTGCACAGTAGACTATTGATGTAATTTTGCTACGACCTTCTG
ATCACCAAGTGTCTGTCAAACCTTATATAgtgagtctctttaactcgaac
atctataatttgaatgtctccttaactcgaacaagtgatctacacgttgt
tttttttttaagaaatactcttttaagaaacatgaggctcagaatgccta
aaaactaaaaaacatataagaaacatgctgaggctgagaatgagaaaata
acattttttaattcataccttcataaggctgattatgtcaaaaagtttag
aaacatgtaaagaaacatttaaggctcaaaaggccgatttcttaagaaac
attgaggctgcttggtaaaactagtttcttaaaaaaaacaacgtgtagtc
CCTTCAGTTATCAATGCCTTATTAACCTCCATATCTCGAAGTTTCtttaa
tttgacaaatttgtgcccctgcgtgttcgagttatagagactccacaaTT
TACGCGTTCGTTAAAAGACGTCGGCAGACTACAGAAAATTGTATTCTTTC
ACTAAACCATCATCTTCCCCTTTTTATAGTAAGCAAATCCGGTGGAGAGA
TGAAACTCGTACAATCATGAAAATCTTCACCAAATCGATGAATTcaatag
actttttcataaattacgtcacgatcgaacatcacttgcctcgtattcac
aatattcaaacaattaccatggtgattttgtcccttgagacattaaatga
ttttttatgaatagtaagtagttttaataaaatcagctgggagttaatca
ctatggcaataatttcaaaatgaggcaagtaatgttcgtgacgtaattta
tgaaaaggtctatacttAACCACTCTTTTTTGANTTTTTATAGTAAGCAA
ATCCGGTGGAGAGATGAAACTCGTACAATCATGAAAATCTTCACCAAATC
GATGAATTcaatagactttttcataaattacgtcacgatcgaacatcact
tgcctcgtattcaatcAATTACAATGGTGATTTTGTCCCTTGAGatattg
aatgattttttatgaatagtaagtagttttaataaaaatcagctgggagt
taatcactatggcaataatttcaaaatgaggcaagtaatgttcgtgacgt
aatttatgaaaaggtctatacttaaccactcttttttgaaaaaagtacca
agtcattttacttttttgcgCCAAAGACCTCAGGACCAAAGACTTTGAAG
GTAAAATTCTCTCGGGTGGTAGAGGACGATTGACATCAAATTCTTTCTAC
AGGATTTTGTCTTTTTGCGACTGTTATAGTACAATTTTTCATTTGCttag
aatttcatgctctatccgGTCTGATAAGGaccatttttctttatttcaaa
tttggatATCGTCAAGATTCTAATTTTATTTAAAGATTTCCTTGAAGCTC
TTGGGACTGCACTGTTTTGGTTGGAAAGCGACGAAGCAAACCTTTACTCT
TTATCTATTGAAGTATTTAGTTTAAAACCTCAAAGgggctagagatgaat
ctttaacctttctcaagcaataAAATGTGAAGCCTTAAGACTTGCGCCGC
ATTTAGAACGAGAGATTGAATCtaacactttctttgttttttttgtggca
tatttttcgaaatctgaaaCTTTCAATCTGACGTTGGAGCGAAAACGCGG
GTACGGgatttggatgggaaataagtggtttcatttcccatccaagagtt
tcgAAGGCATAAAGTCAAGGActcgaaaacaatcaaaatgctaaATCCAA
ACCGTCTGAAAGGAGTTTCTCCCGTTGCTTCTTTGGGATTTAAGGAAATC
TATCTTTCAGTGTACTTTATTTTAATGTGCTTATCTTTTACGTCGTTTTT
TGTTGCTTATTATATAAATTAAATATTCGACTGTACATACCCTAGTTAAA
CTTTCTAGCCTCCAACAAAATATTTGTATTTGTGATAATATGTGCTATTT
TAGAAATTCTGAATATTATagacaaaatacaaaataaatatacaaaaaaa
acaCTAAATATTATTTACAATCATTACCTATAAAATATCTTTCAAGGTCA
TTCGCCCGAGGGAGGCACTTAAGCAAAATTTAGGTACGGGGACGCACCGC
TGGTCAGCGTCCCTTTTTTCAGCTCCGGAAATATATGGCATGGTCCAAAA
ATTATTAACTTCCAAGATATGTATCTGACATTTTTAAAACTCAAGATAAT
GCCCCCGCTCCCGGGTCATTGGTTAAATAAAATCCTCTACGAAAATTTTC
TATCGAATTGCAAAATTGCACAAAATATTGTCccaagtggaaaattatac
tccaatttttgtccctgcTGAAAATAAATCAGGTAAGCAAATCCCCACCG
CAaattattgtgctattttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021695-exon-sc0000393-1491911889:92655..92966 | TCONS_00021695-exon-sc0000393-1491911889:92655..92966 | Clytia hemisphaerica | exon |
| TCONS_00021695-exon-sc0000393-1510915933:92655..92966 | TCONS_00021695-exon-sc0000393-1510915933:92655..92966 | Clytia hemisphaerica | exon |
| TCONS_00021695-exon-sc0000393-1575043694:92655..92966 | TCONS_00021695-exon-sc0000393-1575043694:92655..92966 | Clytia hemisphaerica | exon |
| TCONS_00021695-exon-sc0000393-1491911889:94048..95574 | TCONS_00021695-exon-sc0000393-1491911889:94048..95574 | Clytia hemisphaerica | exon |
| TCONS_00021695-exon-sc0000393-1510915933:94048..95574 | TCONS_00021695-exon-sc0000393-1510915933:94048..95574 | Clytia hemisphaerica | exon |
| TCONS_00021695-exon-sc0000393-1575043694:94048..95574 | TCONS_00021695-exon-sc0000393-1575043694:94048..95574 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000393 | supercontig | sc0000393:92655..95574 + |
Blast
The following BLAST results are available for this feature:
|
