TCONS_00021669 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021669
Unique NameTCONS_00021669
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length397

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021669 ID=TCONS_00021669|Name=TCONS_00021669|organism=Clytia hemisphaerica|type=transcript|length=397bp
NCGAACAATTACTTCTTCAGTTGTGTATCGTGCTTCTTTTCCCGAGTGCT
CTCCTATTCTCCGTCTGATCTGTTTCTTTGGTGGTGTTGTCAAACAACCA
TCTTCACTTATTTTTCTTAATACGAATTAATCTTGGTCTTCTGACGAGAC
GATGTTCATTTTGTGATAAGTTTTCTCCACACGTCTTTGACATTGCAGAG
AATTGATATTTCGGCTCCCTCCACCGAGCTCGCGATACGTTTTTCGACTT
TCTGTAAAGAGAAAATGATAGAAATATACTCTACTTCTTAAACAGGATTA
TCAAACAGATTAATTACCCatttatctttatttcaaattgaaaataatcc
aaaatgacttgaagattacaaaaaaaacataatagcaaGAAAGAAAT
Run BLAST on NCBI

transcript from alignment at sc0000391:210630..211026

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021669 ID=TCONS_00021669|Name=TCONS_00021669|organism=Clytia hemisphaerica|type=transcript|length=397bp|location=Sequence derived from alignment at sc0000391:210630..211026 (Clytia hemisphaerica)
ATTTCTTTCttgctattatgttttttttgtaatcttcaagtcattttgga
ttattttcaatttgaaataaagataaatGGGTAATTAATCTGTTTGATAA
TCCTGTTTAAGAAGTAGAGTATATTTCTATCATTTTCTCTTTACAGAAAG
TCGAAAAACGTATCGCGAGCTCGGTGGAGGGAGCCGAAATATCAATTCTC
TGCAATGTCAAAGACGTGTGGAGAAAACTTATCACAAAATGAACATCGTC
TCGTCAGAAGACCAAGATTAATTCGTATTAAGAAAAATAAGTGAAGATGG
TTGTTTGACAACACCACCAAAGAAACAGATCAGACGGAGAATAGGAGAGC
ACTCGGGAAAAGAAGCACGATACACAACTGAAGAAGTAATTGTTCGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012158XLOC_012158Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021669-exon-sc0000391-1491911889:210630..211026TCONS_00021669-exon-sc0000391-1491911889:210630..211026Clytia hemisphaericaexon
TCONS_00021669-exon-sc0000391-1510915933:210630..211026TCONS_00021669-exon-sc0000391-1510915933:210630..211026Clytia hemisphaericaexon
TCONS_00021669-exon-sc0000391-1575043694:210630..211026TCONS_00021669-exon-sc0000391-1575043694:210630..211026Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000391supercontigsc0000391:210630..211026 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.459433	0.416197	0.521493	109.181	60.8254	26.7303	31.0424	3.9871	12.5281	3.1516	4.66746	0.356575	0.521357	0.189562	0.349577	0	0	0	0.310886	0.182457	0	0	0	0	0.268523	0	0	0	0.213401
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021669 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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