TCONS_00021667 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021667
Unique NameTCONS_00021667
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length706

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021667 ID=TCONS_00021667|Name=TCONS_00021667|organism=Clytia hemisphaerica|type=transcript|length=706bp
TGCAGCCACTCATGATATTGAAAATGAACTTTACTACAGTAACGCCTTGA
ACCAAGTCAGTGAAAAACTTGGTGATCAACGAATGATGAGATGGCTTACT
CTTACTTGTGAAGAACCAAAGAGCGGCAAGTACAAGTGGAAACAACTGAT
TGATTTTCTGGAGAAAGAGATGAAAGTTCACCAACAGAGAGCTGCCAtcc
aaaaatcaaacaaacaacCTGACACCGAAAAACCCAAAGGCGGAGGTGGT
AAAGGAGGTTGATCAACTTACAACACGTTTCCTGACCAATCTTCATGCTA
CATCTGTGGAGCAACAGATCATACACAAACCAATGGTCCTAGTGGAACAA
AGCTAGTACAATATTTCTCCTGCAAAGTTTTCGTCGAAATGACTCCAGCT
GAGCGATTCAAAACCTTGCAACAGAAGAATCTCTGCTACCAGTGTCTCTT
CCCCGGGGCACGACGTGACCAAGGCAAACACAAAGAAGGTCAATGTCAAC
AGACGTTCATATGCCAGCCTCCTTACCATCAACCTTTCAAGCCAAGGAAG
CATATCCTTGTTTGTGAAGAACATAAGACAAACCAACAAAACCTGGACAT
CCTAGAACATTACAGGACCAGATGCATCATCCGACAACCTGTGCCAGCCT
ACTCCAAAGAAATAAAGCTGACCTTCCATTCTGCTAACGATTCAAACGAT
GAGGAT
Run BLAST on NCBI

protein sequence of TCONS_00021667-protein

>TCONS_00021667-protein ID=TCONS_00021667-protein|Name=TCONS_00021667-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MTPAERFKTLQQKNLCYQCLFPGARRDQGKHKEGQCQQTFICQPPYHQPF
KPRKHILVCEEHKTNQQNLDILEHYRTRCIIRQPVPAYSKEIKLTFHSAN
DSNDED
Run BLAST on NCBI

transcript from alignment at sc0000391:202375..203080

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021667 ID=TCONS_00021667|Name=TCONS_00021667|organism=Clytia hemisphaerica|type=transcript|length=706bp|location=Sequence derived from alignment at sc0000391:202375..203080 (Clytia hemisphaerica)
ATCCTCATCGTTTGAATCGTTAGCAGAATGGAAGGTCAGCTTTATTTCTT
TGGAGTAGGCTGGCACAGGTTGTCGGATGATGCATCTGGTCCTGTAATGT
TCTAGGATGTCCAGGTTTTGTTGGTTTGTCTTATGTTCTTCACAAACAAG
GATATGCTTCCTTGGCTTGAAAGGTTGATGGTAAGGAGGCTGGCATATGA
ACGTCTGTTGACATTGACCTTCTTTGTGTTTGCCTTGGTCACGTCGTGCC
CCGGGGAAGAGACACTGGTAGCAGAGATTCTTCTGTTGCAAGGTTTTGAA
TCGCTCAGCTGGAGTCATTTCGACGAAAACTTTGCAGGAGAAATATTGTA
CTAGCTTTGTTCCACTAGGACCATTGGTTTGTGTATGATCTGTTGCTCCA
CAGATGTAGCATGAAGATTGGTCAGGAAACGTGTTGTAAGTTGATCAACC
TCCTTTACCACCTCCGCCTTTGGGTTTTTCGGTGTCAGgttgtttgtttg
atttttggaTGGCAGCTCTCTGTTGGTGAACTTTCATCTCTTTCTCCAGA
AAATCAATCAGTTGTTTCCACTTGTACTTGCCGCTCTTTGGTTCTTCACA
AGTAAGAGTAAGCCATCTCATCATTCGTTGATCACCAAGTTTTTCACTGA
CTTGGTTCAAGGCGTTACTGTAGTAAAGTTCATTTTCAATATCATGAGTG
GCTGCA

Coding sequence (CDS) from alignment at sc0000391:202375..203080

>TCONS_00021667 ID=TCONS_00021667|Name=TCONS_00021667|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at sc0000391:202375..203080 (Clytia hemisphaerica)
ATCCTCATCGTTTGAATCGTTAGCAGAATGGAAGGTCAGCTTTATTTCTT
TGGAGTAGGCTGGCACAGGTTGTCGGATGATGCATCTGGTCCTGTAATGT
TCTAGGATGTCCAGGTTTTGTTGGTTTGTCTTATGTTCTTCACAAACAAG
GATATGCTTCCTTGGCTTGAAAGGTTGATGGTAAGGAGGCTGGCATATGA
ACGTCTGTTGACATTGACCTTCTTTGTGTTTGCCTTGGTCACGTCGTGCC
CCGGGGAAGAGACACTGGTAGCAGAGATTCTTCTGTTGCAAGGTTTTGAA
TCGCTCAGCTGGAGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012156XLOC_012156Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021667-exon-sc0000391-1491911889:202375..203080TCONS_00021667-exon-sc0000391-1491911889:202375..203080Clytia hemisphaericaexon
TCONS_00021667-exon-sc0000391-1510915933:202375..203080TCONS_00021667-exon-sc0000391-1510915933:202375..203080Clytia hemisphaericaexon
TCONS_00021667-exon-sc0000391-1575043694:202375..203080TCONS_00021667-exon-sc0000391-1575043694:202375..203080Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021667-proteinTCONS_00021667-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000391supercontigsc0000391:202375..203080 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.480883	0.701298	1.24154	1.48419	1.17145	0.844354	1.38546	0.773269	0.468469	0.995236	0.87851	0.727062	0.977795	0.262984	0.0597983	0.362731	0.0535875	0.109851	0	0.397028	0.302976	0.354819	0.301742	0	0.35866	0.819371	0.2367	0	0.23032	0.161447
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021667 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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