TCONS_00021665 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021665
Unique NameTCONS_00021665
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length792

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021665 ID=TCONS_00021665|Name=TCONS_00021665|organism=Clytia hemisphaerica|type=transcript|length=792bp
GTCTATAGTCACGGCAGATTATTTTTAGTTTGCCGTTACTCTAGCCGCTC
CGTTACGGACTAGCTAAAGTCCCGGCAGATTGTTTCTTTGTAGCTTTATG
CCGGGACTATAACCAGACCGTTGTGGAGCGGCTATAGTAACGGCACATAT
TAAATTTGGGAAGATAAGTAAACAGATTCTACAATTTCAACGAGGTGTTG
AGTGGCCGAGTGGATAAGGAAGTGGCTACCAAATCTCTGAACAAATTTTG
GATACAAGGAGTTCGAGACGACCCAGGTGATCTTTTCTGAGAGTAGTAAC
ATTCCtcagtaaaaatctttcatgaGATATGATAGCCATGTGAATGGCAG
TCATGTTTGTGGACCTCAATCATATATTCATCAAAAATCATGCAGAATCC
AGAATCATGGCTGCATGTGGAAAAAAAGCTGAAACCCAACCAAAAACGAA
ACATGATAAACTAAAAGCATAATACACGAATACAGTACAGTACCGTAAGC
GTATAAAGTGTGTGAGATGTTGATTTTGTCAAGTTTGTCCCTTTCTTGCT
CTTGGCTTGGATGGTCATCAGATGCATGGATGACTGGTAGGGATGTTGAT
ATTGCTGCACTGCTTAGCTAGCTAGCTAATGCTTCTGGGTATATCTTTCA
TGATCccacttatttttatttatcatGGTGCGGTGGTGGGACAGTATGTA
TGGAGTACCAGGAGTATAAACAATAAAACATACTTTTTAGGGAATTGTTG
AACAATATGAAAAAGTTAGCTTGGTGCGCTGCTGCTCTGTCC
Run BLAST on NCBI

transcript from alignment at sc0000391:162912..163703

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021665 ID=TCONS_00021665|Name=TCONS_00021665|organism=Clytia hemisphaerica|type=transcript|length=792bp|location=Sequence derived from alignment at sc0000391:162912..163703 (Clytia hemisphaerica)
GGACAGAGCAGCAGCGCACCAAGCTAACTTTTTCATATTGTTCAACAATT
CCCTAAAAAGTATGTTTTATTGTTTATACTCCTGGTACTCCATACATACT
GTCCCACCACCGCACCatgataaataaaaataagtggGATCATGAAAGAT
ATACCCAGAAGCATTAGCTAGCTAGCTAAGCAGTGCAGCAATATCAACAT
CCCTACCAGTCATCCATGCATCTGATGACCATCCAAGCCAAGAGCAAGAA
AGGGACAAACTTGACAAAATCAACATCTCACACACTTTATACGCTTACGG
TACTGTACTGTATTCGTGTATTATGCTTTTAGTTTATCATGTTTCGTTTT
TGGTTGGGTTTCAGCTTTTTTTCCACATGCAGCCATGATTCTGGATTCTG
CATGATTTTTGATGAATATATGATTGAGGTCCACAAACATGACTGCCATT
CACATGGCTATCATATCtcatgaaagatttttactgaGGAATGTTACTAC
TCTCAGAAAAGATCACCTGGGTCGTCTCGAACTCCTTGTATCCAAAATTT
GTTCAGAGATTTGGTAGCCACTTCCTTATCCACTCGGCCACTCAACACCT
CGTTGAAATTGTAGAATCTGTTTACTTATCTTCCCAAATTTAATATGTGC
CGTTACTATAGCCGCTCCACAACGGTCTGGTTATAGTCCCGGCATAAAGC
TACAAAGAAACAATCTGCCGGGACTTTAGCTAGTCCGTAACGGAGCGGCT
AGAGTAACGGCAAACTAAAAATAATCTGCCGTGACTATAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012154XLOC_012154Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021665-exon-sc0000391-1491911889:162912..163703TCONS_00021665-exon-sc0000391-1491911889:162912..163703Clytia hemisphaericaexon
TCONS_00021665-exon-sc0000391-1510915933:162912..163703TCONS_00021665-exon-sc0000391-1510915933:162912..163703Clytia hemisphaericaexon
TCONS_00021665-exon-sc0000391-1575043694:162912..163703TCONS_00021665-exon-sc0000391-1575043694:162912..163703Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000391supercontigsc0000391:162912..163703 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.48683	0.237368	0.0689017	0	1.3951	0.867051	1.87769	2.00034	1.33329	1.14166	1.35637	0.770907	0.577962	1.09279	1.85676	1.37155	2.33187	2.3532	1.29378	1.24918	1.50919	1.6498	0.767511	0.888082	0	0.116622	0.33377	0.267157	0.135086	0.206447
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021665 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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