TCONS_00021654 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021654
Unique NameTCONS_00021654
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3225

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021654 ID=TCONS_00021654|Name=TCONS_00021654|organism=Clytia hemisphaerica|type=transcript|length=3225bp
CTtcgaaaaaataaaaggaaaataaagaatCATACCTCTTGCTTTCATCT
ATAATTGCATTCAATTGcagcaatttcaattttttttatctaactcTAAA
ATTTATAAAGCATGAAGGCAAATCGTTAACCATGCCCCCCTCCTCTGTAA
ATTTTCCTtcgaaaaaataaaaggaaaataaagaatCATACCTCTTGCTT
TCATCCACAATCGCATTCAATTGCAGCAATTTCAATAGTTTTATCTAACT
CTAAAATTCATAAAGCATGAAGGCAAATCGTTAACCATACCCCTGCTAAA
GCCTTtcttgcaaaaaaattaaaataacatAAAAAGATTCATACCTCTTG
TTTCCATCCACAACTGCATTCAATTGcagcaatttcaatttttttatcta
gCTCTAAAATTTATAAAGCATGAAGGCAAATCGTTAACCATCCCCCCCCC
TCTGTAAATTTTCCTtcgaaaaaataaaaggaaaataaagaatCATACCT
CTTACTTTCATCCACAATTGCATTCAATTGCAGCAATTTCAATAGTTTTA
TTTAACTTTAAAATTCATAAAGCATGAAGGCAAATCGTTAACCATACCCC
TTCTAAAGCCCttcttgcaaaaaaataaaataacataAAAAGATTCATAC
CTCTTGCTTTCATCCACAACTGCATTCAATTGCAactatttcaattcttt
tatctAACTCTAAAATTCATAAAGCATGAAGGCAAATTGTAAACTCCGCC
CCTTATTAAACCTCTCTAGCAGACAAAATTAACGAATAATCTAAAAACAT
ATAAGTCACACTAAAGAAGACTAAGTATAAACataccaaaaaaattaaag
ggaaaGATTCATACCTCTTACAAGCATGTCTATTCCATTCAACTTCCAAC
ATTTCTATGTAGCTCTAAAATTTATAAAGTATGAAGGAAAATCGTAAACC
ATCCCGTTCTGAAACTTCTCTTGCGGGAAAAAGAATGAATAATCCAAAAG
ACAGAATTCATACTAGACGATTAGGTTCAAACAGACAAGAAACATTGAAC
AtgaaatttaatacctctttatTTTATCACTACTCCATTCAACATTTAAG
ATACTTTCTCCAATTCTTCAGTCATCAAAGCATAAACGCCCCTTTCCGTA
ATCTCCCTTGCAgacaaaaataattaatatcaaaaaaatatataatttag
CTCACACTTAAGAAGACAAGGTATAAACAGACCAATATAagtggaaaaaa
aaattcatacctTTCAGTTGCATCTAATATGACATTCAACATGCATcatt
aataaaatttttatccaaCTCTAAAATATAAAGCATAGAGGCACCATTGT
TATCCATCCCCCCTCATGAAACCTCCCTTACcaacaacagaaaaaaatcG
CTCAAATAATATGAAACTCACGCTTAAGAATACTAGGTCCAAACATGCCA
TTGATAGTGAAAATAGAGATTCATACCTTTTATTTGCTTCTACCATAACA
TTCAACTTATAAcatttataattattttttctaattctaaAATTTATTAA
GTTTAACGGAGAACTGGtaactaccccccccccttctgcATACTCCCCTT
GCGGCCAAAATAATGAATATTCTAAAAACAAAAGGTTATCAAAGGACTAG
atacaaacaaaacaaagaaatttaacATAAAAAGATTCATACCTCTTAAT
TCTATCCACATTTCCATTCAACTTTTAATTGTTTTATCTAACTCTAAAAT
TCATAAAGCATAAAGGCGAATTGTTATCTAGCCTTCTCGTGAAACTTCCC
TTACTGACATAAAAAACGAACGATCAAATAATACACGACTCAATCTTATA
AAAACTAAAGGAGAATCGGTAACAACCACTCCATATCtgaaatatctgaa
aaatcTGAAACCACCCTTACAgacaaaaatatcaagtaaTAAAAAGTCAG
ACAGGTCAACGTCGAAAGACGAAATACaaacagaacaacaaaaattgaac
ataaagaATCATACCTCTTacttccaccattgcattcaacTTGGAAAATT
TTTAATCGTTTTATCTAACTCTAAAAATCATAAAGCATGAAGGCGAATTG
TTATCTTGTCCTCTCCTGAAACTATCCGTACCGACATATAGAATGAATAG
TCAAACAAATACACGACTCAATCTTAAGAAAACTAAAGGAGAATCGGTAA
AACCAATCCATATCtgaaatatctgaaaaatcTGAAACCACCCTAACAGA
CAAAAATAACAAGTAATAAAAAGTAAGACAGGCCAACGTCAAATGACGAG
atacaaaaagaagaaacaaattGAATATAAACAATCATACCTCTTACTTC
TATCCACATTTCCATTCaacttttcattgttttatCTAACTCTAAAATTC
ATAAAGCATGAAAGTGAATTGTTATCTTGTCCCCTCCTGAAACTATCCGT
ACCGATGAAACCTCAAAAGACAAGATACaaacagaacaacaaaaattaaa
CATAAAGAATCATACCTCTTACTTCCACAATTGCATTCAACTTGAGACAT
TCCTAATAGTTTTATGAAActctaaaattcataaaaaataaaaataaatc
gtTAACTATCCCCTTTCTAAAATCTATCTTGTGGAATAAAAGAATGGATA
CTCAAAATCAAATAACATAGCAGTCAAGCTTGACGACAAAGTACAAACAA
ATCATAAgcaattgaaataaaatttcataCCTCTTATTTGAATTCACCAA
TCCACTCAAATTGCAACATTTATGATATTATATTTTATCTAACTCTAAAA
TTAATATAGCATGAAAATAAATCGTTAACTACCCCCTCTCAAACATCCCA
TGCAAAAAAATAACGAATGAATAATCTAAATAATAGAAACATCATAGTCC
CACTTGACGACAAAGTACGAACAGACAATAAgtatttaaagtaaaatttc
ataCCTATTAGCTGCATTCAAAAACTCCACTCAAGTTGCAacatttataa
tattttatctAACTCTAAAATTGATATAGCATGAAAATAAATCGTTAAAT
ACCCCCTCTCAAACCTCCCatgcaaaaaataaagaatgaataatcaaaaa
taaaaacacgtaGTAGTCACGCTTGACGACAAGGTACAAACAGACCAAAa
gcatttgaaataaaatttcttacCTCTTAGTTGCATTCAAACACTCCACT
CAAGTTGCAacatttataatatttt
Run BLAST on NCBI

transcript from alignment at sc0000391:222483..225707-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021654 ID=TCONS_00021654|Name=TCONS_00021654|organism=Clytia hemisphaerica|type=transcript|length=3225bp|location=Sequence derived from alignment at sc0000391:222483..225707- (Clytia hemisphaerica)
CTTCGAAAAAATAAAAGGAAAATAAAGAATCATACCTCTTGCTTTCATCT
ATAATTGCATTCAATTGCAGCAATTTCAATTTTTTTTATCTAACTCTAAA
ATTTATAAAGCATGAAGGCAAATCGTTAACCATGCCCCCCTCCTCTGTAA
ATTTTCCTTCGAAAAAATAAAAGGAAAATAAAGAATCATACCTCTTGCTT
TCATCCACAATCGCATTCAATTGCAGCAATTTCAATAGTTTTATCTAACT
CTAAAATTCATAAAGCATGAAGGCAAATCGTTAACCATACCCCTGCTAAA
GCCTTTCTTGCAAAAAAATTAAAATAACATAAAAAGATTCATACCTCTTG
TTTCCATCCACAACTGCATTCAATTGCAGCAATTTCAATTTTTTTATCTA
GCTCTAAAATTTATAAAGCATGAAGGCAAATCGTTAACCATCCCCCCCCC
TCTGTAAATTTTCCTTCGAAAAAATAAAAGGAAAATAAAGAATCATACCT
CTTACTTTCATCCACAATTGCATTCAATTGCAGCAATTTCAATAGTTTTA
TTTAACTTTAAAATTCATAAAGCATGAAGGCAAATCGTTAACCATACCCC
TTCTAAAGCCCTTCTTGCAAAAAAATAAAATAACATAAAAAGATTCATAC
CTCTTGCTTTCATCCACAACTGCATTCAATTGCAACTATTTCAATTCTTT
TATCTAACTCTAAAATTCATAAAGCATGAAGGCAAATTGTAAACTCCGCC
CCTTATTAAACCTCTCTAGCAGACAAAATTAACGAATAATCTAAAAACAT
ATAAGTCACACTAAAGAAGACTAAGTATAAACATACCAAAAAAATTAAAG
GGAAAGATTCATACCTCTTACAAGCATGTCTATTCCATTCAACTTCCAAC
ATTTCTATGTAGCTCTAAAATTTATAAAGTATGAAGGAAAATCGTAAACC
ATCCCGTTCTGAAACTTCTCTTGCGGGAAAAAGAATGAATAATCCAAAAG
ACAGAATTCATACTAGACGATTAGGTTCAAACAGACAAGAAACATTGAAC
ATGAAATTTAATACCTCTTTATTTTATCACTACTCCATTCAACATTTAAG
ATACTTTCTCCAATTCTTCAGTCATCAAAGCATAAACGCCCCTTTCCGTA
ATCTCCCTTGCAGACAAAAATAATTAATATCAAAAAAATATATAATTTAG
CTCACACTTAAGAAGACAAGGTATAAACAGACCAATATAAGTGGAAAAAA
AAATTCATACCTTTCAGTTGCATCTAATATGACATTCAACATGCATCATT
AATAAAATTTTTATCCAACTCTAAAATATAAAGCATAGAGGCACCATTGT
TATCCATCCCCCCTCATGAAACCTCCCTTACCAACAACAGAAAAAAATCG
CTCAAATAATATGAAACTCACGCTTAAGAATACTAGGTCCAAACATGCCA
TTGATAGTGAAAATAGAGATTCATACCTTTTATTTGCTTCTACCATAACA
TTCAACTTATAACATTTATAATTATTTTTTCTAATTCTAAAATTTATTAA
GTTTAACGGAGAACTGGTAACTACCCCCCCCCCTTCTGCATACTCCCCTT
GCGGCCAAAATAATGAATATTCTAAAAACAAAAGGTTATCAAAGGACTAG
ATACAAACAAAACAAAGAAATTTAACATAAAAAGATTCATACCTCTTAAT
TCTATCCACATTTCCATTCAACTTTTAATTGTTTTATCTAACTCTAAAAT
TCATAAAGCATAAAGGCGAATTGTTATCTAGCCTTCTCGTGAAACTTCCC
TTACTGACATAAAAAACGAACGATCAAATAATACACGACTCAATCTTATA
AAAACTAAAGGAGAATCGGTAACAACCACTCCATATCTGAAATATCTGAA
AAATCTGAAACCACCCTTACAGACAAAAATATCAAGTAATAAAAAGTCAG
ACAGGTCAACGTCGAAAGACGAAATACAAACAGAACAACAAAAATTGAAC
ATAAAGAATCATACCTCTTACTTCCACCATTGCATTCAACTTGGAAAATT
TTTAATCGTTTTATCTAACTCTAAAAATCATAAAGCATGAAGGCGAATTG
TTATCTTGTCCTCTCCTGAAACTATCCGTACCGACATATAGAATGAATAG
TCAAACAAATACACGACTCAATCTTAAGAAAACTAAAGGAGAATCGGTAA
AACCAATCCATATCTGAAATATCTGAAAAATCTGAAACCACCCTAACAGA
CAAAAATAACAAGTAATAAAAAGTAAGACAGGCCAACGTCAAATGACGAG
ATACAAAAAGAAGAAACAAATTGAATATAAACAATCATACCTCTTACTTC
TATCCACATTTCCATTCAACTTTTCATTGTTTTATCTAACTCTAAAATTC
ATAAAGCATGAAAGTGAATTGTTATCTTGTCCCCTCCTGAAACTATCCGT
ACCGATGAAACCTCAAAAGACAAGATACAAACAGAACAACAAAAATTAAA
CATAAAGAATCATACCTCTTACTTCCACAATTGCATTCAACTTGAGACAT
TCCTAATAGTTTTATGAAACTCTAAAATTCATAAAAAATAAAAATAAATC
GTTAACTATCCCCTTTCTAAAATCTATCTTGTGGAATAAAAGAATGGATA
CTCAAAATCAAATAACATAGCAGTCAAGCTTGACGACAAAGTACAAACAA
ATCATAAGCAATTGAAATAAAATTTCATACCTCTTATTTGAATTCACCAA
TCCACTCAAATTGCAACATTTATGATATTATATTTTATCTAACTCTAAAA
TTAATATAGCATGAAAATAAATCGTTAACTACCCCCTCTCAAACATCCCA
TGCAAAAAAATAACGAATGAATAATCTAAATAATAGAAACATCATAGTCC
CACTTGACGACAAAGTACGAACAGACAATAAGTATTTAAAGTAAAATTTC
ATACCTATTAGCTGCATTCAAAAACTCCACTCAAGTTGCAACATTTATAA
TATTTTATCTAACTCTAAAATTGATATAGCATGAAAATAAATCGTTAAAT
ACCCCCTCTCAAACCTCCCATGCAAAAAATAAAGAATGAATAATCAAAAA
TAAAAACACGTAGTAGTCACGCTTGACGACAAGGTACAAACAGACCAAAA
GCATTTGAAATAAAATTTCTTACCTCTTAGTTGCATTCAAACACTCCACT
CAAGTTGCAACATTTATAATATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012143XLOC_012143Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021654-exon-sc0000391-1575043694:222483..225707TCONS_00021654-exon-sc0000391-1575043694:222483..225707Clytia hemisphaericaexon
TCONS_00021654-exon-sc0000391-1510915933:222483..225707TCONS_00021654-exon-sc0000391-1510915933:222483..225707Clytia hemisphaericaexon
TCONS_00021654-exon-sc0000391-1491911889:222483..225707TCONS_00021654-exon-sc0000391-1491911889:222483..225707Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000391supercontigsc0000391:222483..225707 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0405799	0.0125354	0	0.061218	0	0	0.0238353	0	0	0.103517	0	0	0	0	0	0	0	0	0	0	0.053981	0.301878	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021654 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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