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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021650 ID=TCONS_00021650|Name=TCONS_00021650|organism=Clytia hemisphaerica|type=transcript|length=1233bp
attaatTTTAACGATTTGCTAACATCTCTCTGGTCTATATATTACACGAT
TACCAAAAAGGTTTCAGAAGGAGACATCATTGATCAATTCTCACTAGAGA
ACACAACCGATTCTGTTTACAATCTCAATCGGATTCAATTATTGGAAATC
GCTGAAAACACAACGAAAAAAGGAAACTTGAGAGTGAAGCTGTACAAGAA
AAAGAACCTATCCATCGATAAAGAAGACTACCGTTTCGAATTCAATACAG
AGGCTGATACCTAATAAACTGAAATCTATTTGTTTGATAGAGTACTACTA
AGTTGAATATCCGGGTTGAATAGCAATAGCGAAGAGAACCCTCAATCTAA
ATCTAAACCTTGAAACTAACCtgataattgataaaaagattGCTAACTAA
ATTTCTGTATCCACTTAACGCAAACGATGGATTTCAACTTGATTTTTAGA
GTTACACTTGGCTTGCTCGGTCTTTTCCTGTCCGTTTATTCATTATTTGT
GGAGATGCAGGCACATGCTGACAAGAATTACAAAGCAATGTGTGACATAA
GCGAACGTGTTAGCTGCACCAAAGTCTTTTTATCCGATTTCGGACGTGGC
TTTGGATTGGTTGCTCCTATCTTCGGTAAAGATTCACCATTGAACCTACC
TAATCCTGTTTTTGGcattgttttttattctttgGTCATTTTGATATCGT
TGTTCAAAAGTAATAAAGGTGGCTTGAGATTGTTGACAACTCTGGCTGGT
GTGTCATGTTTGATGAGCCTTTACTTGGCAAGTATTTTATATCGAATGAA
AGATACTTGTTTGGTGTGTATCTCGACCTATATTGTCAATTTCGGATTAT
TATATTTCTCGTTCAAACGATTTAATGAGTATGTTGTAATGGAGAAATAT
AAGAGTGAATAAATTAACAGTAGAAGGATTCGTATTGATTTTTTAATGAT
ACGTAATGCCAAGGAATCATATTGAGTTATCAGGCTTGCTGGTagatttc
tcatcttttaccgAAGGACAGCTTTTTAAATATATTGAAATATACAATGA
TGAtgatttatataatttttaagaattctttGTAAAATAACTAAACATGC
TTTATTATAATTATCACGAAAAAGTGAAAGGTAATTATTAAAGGAGTACC
ATGTTTctctttttatatttataacgcttataagcatatgaaagCTCCgg
gttaaatatttcctaagcataacatatcATAAG Run BLAST on NCBI transcript from alignment at sc0000391:57427..58836- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021650 ID=TCONS_00021650|Name=TCONS_00021650|organism=Clytia hemisphaerica|type=transcript|length=1410bp|location=Sequence derived from alignment at sc0000391:57427..58836- (Clytia hemisphaerica)
ATTAATTTTAACGATTTGCTAACATCTCTCTGGTCTATATATTACACGAT
TACCAAAAAGGTAAGTATAATTTCCACTACCCTTACTCTTCTCTTATGTT
TTGAATACTACTTTGAGATATCTTAAATTTCATCAAGCACTCAGTTTTAA
CTACTTTCATAAAAAAATATTCAGAAGACCTTACAAACTACTGGCATTAA
CTTTGTTTATTTAAATGTTTTTCTAATTATTTGACAGGTTTCAGAAGGAG
ACATCATTGATCAATTCTCACTAGAGAACACAACCGATTCTGTTTACAAT
CTCAATCGGATTCAATTATTGGAAATCGCTGAAAACACAACGAAAAAAGG
AAACTTGAGAGTGAAGCTGTACAAGAAAAAGAACCTATCCATCGATAAAG
AAGACTACCGTTTCGAATTCAATACAGAGGCTGATACCTAATAAACTGAA
ATCTATTTGTTTGATAGAGTACTACTAAGTTGAATATCCGGGTTGAATAG
CAATAGCGAAGAGAACCCTCAATCTAAATCTAAACCTTGAAACTAACCTG
ATAATTGATAAAAAGATTGCTAACTAAATTTCTGTATCCACTTAACGCAA
ACGATGGATTTCAACTTGATTTTTAGAGTTACACTTGGCTTGCTCGGTCT
TTTCCTGTCCGTTTATTCATTATTTGTGGAGATGCAGGCACATGCTGACA
AGAATTACAAAGCAATGTGTGACATAAGCGAACGTGTTAGCTGCACCAAA
GTCTTTTTATCCGATTTCGGACGTGGCTTTGGATTGGTTGCTCCTATCTT
CGGTAAAGATTCACCATTGAACCTACCTAATCCTGTTTTTGGCATTGTTT
TTTATTCTTTGGTCATTTTGATATCGTTGTTCAAAAGTAATAAAGGTGGC
TTGAGATTGTTGACAACTCTGGCTGGTGTGTCATGTTTGATGAGCCTTTA
CTTGGCAAGTATTTTATATCGAATGAAAGATACTTGTTTGGTGTGTATCT
CGACCTATATTGTCAATTTCGGATTATTATATTTCTCGTTCAAACGATTT
AATGAGTATGTTGTAATGGAGAAATATAAGAGTGAATAAATTAACAGTAG
AAGGATTCGTATTGATTTTTTAATGATACGTAATGCCAAGGAATCATATT
GAGTTATCAGGCTTGCTGGTAGATTTCTCATCTTTTACCGAAGGACAGCT
TTTTAAATATATTGAAATATACAATGATGATGATTTATATAATTTTTAAG
AATTCTTTGTAAAATAACTAAACATGCTTTATTATAATTATCACGAAAAA
GTGAAAGGTAATTATTAAAGGAGTACCATGTTTCTCTTTTTATATTTATA
ACGCTTATAAGCATATGAAAGCTCCGGGTTAAATATTTCCTAAGCATAAC
ATATCATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021650-exon-sc0000391-1575043694:58777..58836 | TCONS_00021650-exon-sc0000391-1575043694:58777..58836 | Clytia hemisphaerica | exon |
| TCONS_00021650-exon-sc0000391-1575043694:57427..58599 | TCONS_00021650-exon-sc0000391-1575043694:57427..58599 | Clytia hemisphaerica | exon |
| TCONS_00021650-exon-sc0000391-1510915933:58777..58836 | TCONS_00021650-exon-sc0000391-1510915933:58777..58836 | Clytia hemisphaerica | exon |
| TCONS_00021650-exon-sc0000391-1510915933:57427..58599 | TCONS_00021650-exon-sc0000391-1510915933:57427..58599 | Clytia hemisphaerica | exon |
| TCONS_00021650-exon-sc0000391-1491911889:58777..58836 | TCONS_00021650-exon-sc0000391-1491911889:58777..58836 | Clytia hemisphaerica | exon |
| TCONS_00021650-exon-sc0000391-1491911889:57427..58599 | TCONS_00021650-exon-sc0000391-1491911889:57427..58599 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000391 | supercontig | sc0000391:57427..58836 - |
Blast
BLAST of TCONS_00021650 vs. Swiss-Prot (Human)
Match: VKORL (Vitamin K epoxide reductase complex subunit 1-like protein 1 OS=Homo sapiens GN=VKORC1L1 PE=1 SV=2) HSP 1 Score: 116.316 bits (290), Expect = 2.191e-30 Identity = 61/148 (41.22%), Postives = 93/148 (62.84%), Query Frame = 1
Query: 433 FNLIFRVTLGLLGLFLSVYSLFVEMQAHADKNYKAMCDISERVSCTKVFLSDFGRGFGLVAPIFGKDSPLNLPNPVFGIVFYSLVILISLFKSNKGGLRLLTTLAGVSCLMSLYLASILY-RMKDTCLVCISTYIVNFGLLYFSFKRF 873
+ + R + G+ LS+Y+ VE + D ++A+CD+ V C+ S +GRGFGL+ IFGKD LN PN VFG++FY L +L+ + S L L+T+ + +S + SLYLA ILY +K+ C++CI TY++NF LL ++KR
Sbjct: 14 WERVARYAVCAAGILLSIYAYHVEREKERDPEHRALCDLGPWVKCSAALASRWGRGFGLLGSIFGKDGVLNQPNSVFGLIFYILQLLLGMTASAVAALILMTS-SIMSVVGSLYLAYILYFVLKEFCIICIVTYVLNFLLLIINYKRL 160
The following BLAST results are available for this feature:
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