TCONS_00021636 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021636
Unique NameTCONS_00021636
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2148

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021636 ID=TCONS_00021636|Name=TCONS_00021636|organism=Clytia hemisphaerica|type=transcript|length=2148bp
CAGACAGGCAGAAAGAAATAAGAAATcgataaattcaaaaataaataaca
aatgTCTGATATGTCACaaccaaataaaagaaaagaagtTGATTTGAAGA
AATTTATACATGCTATCCAGGAAGGCTCAGATCATGAATATTGTTCCCAA
TCCACCCAACAACAAGAAGAACCAGAGGTTATCAGTGAGGAAATAGTAAC
TCTTGAGACATCATCTCAGAATGACCAAGCTGATATACAGAATCGCTGTG
AGCAACAACCTGCGGATATCATTACTTTCCAAACATGGTCAGAAACAGAA
AATGCCATAAAGCAGTTTGAACGAAAAACCAAAACACGATATCCTGTTTA
TAGAAAATCAGCTGGGTTCAACTCCGAAGAAATCACCTTAAAAGGACGGA
AGATTCTTTTCCAAGACAACAAATCGACCAAAGGACGTGAGAGGCAAATC
CAATTTGATGGCATTCCCTTCATAATAATGGGGACAAAGCAATTCGATTG
TGACTATCACAAAGATCGGTATACCCAGGGAAGGAAAAGGAAACGCCTGG
AAGCAGGAGTTATACCCAAAAAGGTCGTCAAAAGCAAGAAAGGAAATTGT
CCATGTGAAATCATTGTCAGAGACATTGTTGCTTTCCCTGAATTCAAGat
CACTAGACCAACAGAGAGAATTAAAAGAACTTGTTGTACAAAGTTGAAAG
TACAATTTGAGAAGGCTTTGCCAAGGTTTGAACGATTTTTCATCACACAA
TTTCCATCTCCAAACGATCATGTTGGTCATGAGGTTGAAGCAGTTGAAGT
AGTCAAACCACCTAGTGATATGTGTCGTGAACTGACCGACAGAATTGCAG
GGTTGAGCGTTTTGCTAGAAGAAAATACAGATTTGATGGAAGATGTGAAC
AATACACTTCTCAGTTTGGTGCAGAAAATGGAATCGTCTTTGGTGTTGAT
TTAGGTTCCAGTTGACCAGGAAAATCCTCTACAACCAACTTGATTAGTCG
AACAATTATCAGGTGCTAAAGATGTAGACGGTGTTGGATTTACCATCTCT
TTCTCACGCTAAGTCAAAAGTGGAATATTGCCAATAGCATCGGCTAAGAG
AAACCAACCTTGCTCTCCCAACGACATAGTTTATTTGGTAGACCCTCATC
TTCTCAAAAAATATCGTTAGCCTTGCTTCAGAGTGACCAGGAGAAAATCT
TGTactcaggcaaaaataaaaaaaatgtagtgtttccggaaacccgtcgg
gtgaaaaaaaaaattctgacccagccgcagactatgggttcattaTGGTT
CATCAGAAAGAAAATTAAGTTGACCGTTTAAGCTATCAAAtgtcgtttgg
ttagatattcccgcttgtaaatcaagttttgtttgttaatagtagataca
ttagtattcatggCTTACTTCGTTCTGTTTGTAcctaaaagttatcttta
aagttctatttcaatgatcttaagttatcaaaaatagcaacaaaaaaagt
ttttccggccggccgcatgagagcttttttccttcacccgcattccggaa
acaccacatttttttattttcggcTCAAGTAGATCAATTTCTCACACAGC
ATAACAAAGAGAACGCTACTTGCTTTCAAAATATGGATATCaaagtatta
tatttttttgaaaaatggataTAAGGCTGGCTAGAATTTGGACCGACAGT
GTAGAAGAAGCTGGAAAACGTTTTGGCAACATTTGATGCCGATGTGAGGT
ATTAGTGTGCTTCCGATTTCAGTGACATTACCGAAAATAATTCATCTTTA
TGATTTCTTATAAGTTTAAATTGGAAATTTTTCACTTGGTGGATAGATCA
GTAACGAATTGTGTTATGAATGTTACTGAAAATCCATGCCAATGCACATA
ATATTTCGTCAAAGGTATGGATCCTCACCATGCTTGCTAATAATTCGACA
CCACCAACGGTTTACTTTCACTGAATTCTACTTGAATGAAATTATGTGTT
TAATCTTATGAAATGAACTGTTAAAATGGTTGGAttataaagaaatataa
tttttctgtTTACCTTTAAAGAGGCCCCTCCCCCtagcggtaactctgat
cacgatatcacacaattttttgtcttcagtcacgatcacgaaaatcag
Run BLAST on NCBI

protein sequence of TCONS_00021636-protein

>TCONS_00021636-protein ID=TCONS_00021636-protein|Name=TCONS_00021636-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
MSDMSQPNKRKEVDLKKFIHAIQEGSDHEYCSQSTQQQEEPEVISEEIVT
LETSSQNDQADIQNRCEQQPADIITFQTWSETENAIKQFERKTKTRYPVY
RKSAGFNSEEITLKGRKILFQDNKSTKGRERQIQFDGIPFIIMGTKQFDC
DYHKDRYTQGRKRKRLEAGVIPKKVVKSKKGNCPCEIIVRDIVAFPEFKI
TRPTERIKRTCCTKLKVQFEKALPRFERFFITQFPSPNDHVGHEVEAVEV
VKPPSDMCRELTDRIAGLSVLLEENTDLMEDVNNTLLSLVQKMESSLVLI
Run BLAST on NCBI

transcript from alignment at sc0000391:163940..175015+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021636 ID=TCONS_00021636|Name=TCONS_00021636|organism=Clytia hemisphaerica|type=transcript|length=11076bp|location=Sequence derived from alignment at sc0000391:163940..175015+ (Clytia hemisphaerica)
CAGACAGGGTAAGTCAAAGTTTATTACATGTTGTGGATAGTTTCCATCAA
TGGCAACGGCtcaaaatgtttctcttttttttgtcttaattctgtcACCA
CCATCATTTTGCTTTTGGCTATTGTAGCTATTGGCTattcatagaccttt
tttcaaaagaggacgtcctgttgaataattatgtagtccagccataaata
agcaatgatagagccatgcataattactgtatcatacatattgtaataat
tatgcatggttttatcattgtttttctacATAAAAAACTGCAAGGccgaa
agccacatgaatatgggtTCATCCTAtgctataaaaggaagttcattcta
tggtggcctatcttgaagtgaaggtggttgaacaaaatgttgttggcata
ttgatgtaactgacaatcgaatttcgagtaccaaaatttcaaaaaaattg
taagtcttcaatcactttcttaacaacaCCCATTTCGACCGCCATTTTGT
GTGCCTtcgccctgggtttcctcaagtaactcatatggtgcattctgatt
ggttggagaaaacgaaagtggttttcgcGCGTGAATCGGGTGTTTTAATT
GGCCGAAATAaacttggtttcagattattttgacgtgctgctactggaaa
catatttgataaaatcgaaggtattcaatatgatcaaaAGTGATTGAAAG
TAATCGAACAGTCAGCCACGGAAATCGTTGCATATTTGCACGGGGTGTGC
ATTTGCAAAggtttcaacaattttttttgaccctgtgcaaatgagctaga
acgtGTAAGGCaaaatgcgcgaaaattaacaaatctcaactttaaaataa
aaatggcaTACTGTAAAACGAAGACGAATGgcgttttcattttctcttta
gaagatattcttaagcctttttagaaaaattttgtcTACGGGTTAAATTT
TTGATCtgtgcatttttttataatcaagtGTAACATTTTTCCACTCTGTG
CAAATGCAACGGGTCGCAGTGATGGAGTGTATTTGCACGGggttttttcg
tcactttcgtTTACGACCCGTTGCATTTGCCGCATGTGGAACcctgtgca
aatgcaaggatttctgTGACTGACAGTAATCGAAACAATCGGACGAATCG
AAAATGGTCGATAAAAATACCATAATTTGGAGTTgagtgagtattcgatc
accAATAGAATCGATAAGTGGTCACTGATCACCTTTGATTGTTATcaatc
attattgattacttcgatcacaatcgaacgttcgattagtaccgtctggt
tttaggggcaccggtagggttggaaGCCATTATATAGAGTCTTTAAATTA
CACCCTACAAGTATTTGTTCGTTTTGATTTCTGCCGTGTCCTGTAGGCGC
AACCGGTTAGGCGTCGGgtcagggctgcaaataaatttttagtcaatcgg
acatcatgtccgacagaaatgaaatcctgttggtcaaactcaaaatcctg
ccggtcattcagtgtatatatttttttaattatgcaGTCTTGAAAGTTAC
AGAGAAAGCAAGTAGGTAAGATAAAAGTTACCTTGGAATAGTTTGCTACT
GTATATACAgtaacagagaaattgattcgataaaagtgatcttagaaaca
ctcttgaaatttatgaagtaagcaagttgataaaagtgatcttagaaaca
ctcttgaaagttacgaagaaagcgagtcgataaaagttaactttgaaaca
cccttgaaagttacgaagaaatcgaattgataaaagtgatcttagaaaca
ctcttgaaagttacgaagaaagcgagtcgataaaagttaactttgaaaca
cccttgaaagttacgaagaaatcgaattgataaaagtgatcttagaaaca
ctcttgaaagttatgaagaaagcaagttgacaaaagtaattttaGAAACA
CCCgcaaaagttacaaagaaagcgggttgataaaagtgatcttagaaaca
aagaaagtaatgAAGAAACtggaagaaagcaagttgataaaagtaaaaaa
cttagatacaccctgaaagctacaaaggaagctagtattaaaagaatagg
ctaagtaagagacaggggtgtaagagatCNtgataaaagtaaaaaactta
gaaacaccctgaaagctacaaaggaagctagtattaaaagaataggctaa
gtaagagacaggggtgtaagagatCTATTTTCAACTAtcaagttaatggt
ttattcctttttttgttcggacatcatgaccgacacaaaagattttcagt
cggtcaaatggctttttcagtcggacattgaccgatgaccgacgcttatt
tgcagccTTGTCGGGTTtggaaaccaaggttgcttacatttggtggttcg
agccgagGTAAGGGAGTATATTTCAGAAATAGGTTAAAAAAGTCAGAATA
TAACTTAGAACAGTTCAAAAACTCAGAATAACATCAGAAAGTAGAATGGA
AGATAGGAAATAGAGAAAGTAGAAAAAGTCCTGGAGAGTCATTTACAATC
TACCCACGACCATTGTATTGTATTCAAACTCATTCTTTCCATCTACCAtc
aaaatgggccattccagaatttatctgtaacagggggggcgggcgacaca
ggatttccgagggcaaaaattttcaccgaatttcgaaatttctaaggcga
gagaagaaaatgtatgaatttccaaggcaattgaaacaaaaaaggcaaaa
aagtgtggaatttccgatgcattttgcaaaagtacatggattttcatcgg
aatttctgaccaccactggaataaaataattatttccaaggttatatata
aaaaatttaaaaatccgatggggggtaacaaaaattttctggaatggccc
aatatggAACAAATTACCAATTAGaactgcaaatttgaaaactgaaaaag
aattcaaaaattctATTGATAGCTTAATATTCTAGTGTacacttttaaac
ttttatgaattttaatctaataaatctaatttaaaattgtataaattaCC
TATCTATAttaatttttatatctttatcttAGCTATTAAACCTTtgcatt
tttgtatttttttttttacgtaGAATTTGCGAGATTACCATTTTATGTCT
TATGCAAATAtaaaactagaactagaactagacgGTATGTggtgtttttt
tgcaaacttcaaaaaactgatttttgtcccgcttttgcggaactttagct
taagtgcttgcgtgcagcattagggtacaaagtccaaatatgcgtttccc
tgGAACCCCAATATTCctggattagaaaaagctatacctgtcaTCTTtgt
tctttaaagaatcaacaataATTAGTAACAGTAATAACAGTAACTAGCCA
TATGCGCAGCGTCGCAtgctgcgtgtcccaatccagtgaATCACTACACA
TCTAAAAATTTCTAACGGAAGAAAGATATCCGCCGATTGATGATTTgata
aaggagaaaaaagataacactgcattgcaatttttaaccacaattaaata
aatggcttagcaaaagtatattttagatctgcttagccatcgtggctagc
catcgtggttatacattcgagggtgactttgaaagactttgtttttgtaa
aaagttttgaaagtgataggtaGGGAgtcgctattgtaaacagaaagttt
taaaaagcatctgaataagaattctttaaaatgacaaaaagaatttggga
aaaaggttgattttaacccataaagctccaaacttggtgaatagaaaata
gtatcttggggtctcaaagttagtctagtggtaggaaatctgcttagggt
gcaaaaagatgatggttcaacgccaNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagatgatggttca
acgccatgaagaggaggctttgtagagctttgttagattttcgaaaactt
tttacaaaacgttgtaaacacacacgtttaagcgtattaatatagaTTAG
TCAATTGCCGAAGCAATAATCAGGCATTAAGAATTTACAAATTATAATAC
ATCAGACAGTTTTGTTGTAAATGTTTTTAGGCACTGGACAAATACACCAG
ATAGTCAGGCACTGCACAAAAACACCAGATAGTCCGGTGTGTTGACAGCC
AGAGTCATACTACTTCTCAGAAAATTGCCATGGAATGTGTGCTCCACCCT
TGTGTTtaaaatagttgttttggagaacacaACAAcctattgaataatta
attacttcacaacagttacctagagacaagataatttatcacgtttttat
tggctgatGGAAAGTAATGTgaagtaatttgttattcaataggccgtcgc
gttctccaaaacaactattgtttgaaatgaaaacaaacaCCTTTTTCTTA
TAAGGGATTAAGGAAAGTCAAATGTGGAATTTGCGCTCAACAAGGCATGC
CTGGTACGTTTTTCCAATTCAAGTTTCTGTTTGTGCACCATTGGCCTCAG
TGAAAATCCATTAGCCGGGGTTGGCAACATAAGGGGCTTCATTTGCCctt
aaaatagaccttttgctaatcaggataAATCCATGTCATGTATCACTGTG
TTGATGCTGGATTCTTTAGCCATTCAACATGACTAGCAAAATGTCTATAC
TACTGTATAAACAGCGCCTACTTTAGATCCTTCTACTATGATGACCTAAG
ATCGATACTAATGCCAAATTGTGCCGAATTGTGCACCAATTCCAGACTGA
GGGGGGGAGGTTCAGCTTTTAAAAATTCTTGCAACcattatttttttgag
aaaaaaattgagtGGCATAATAATATCataaatagaaagaaaatacaata
ataaaattttcagaaattcgtGAGAATTCTCTTTGACAGGAGTTTTAAGA
AACTTCCCCTAAGGAAACGAAGGCAAAACCAGGTTTGTTAACCCATTGCC
CAGAAACCAATGGATGGAGAGAAACAAAATATGTGCCTGGTGCGCACATA
TTTTGTAAATAacaggaaaggtgtatttcTACACACTCCAAGGGCAGGTG
CTATTTGTCGGTTAAaacattaattaaaaaaataagtttttctctttcta
aaTGACTAAATGACGGATTCATATTCTAACCATCACACACTACTAGGCCT
GAAAACATCAATTGTGGACacggttgatgttttttatccacagtcaatca
tttttatggacagtcaatcatttttacggacagtcaatcatttttatgga
cagtcaatatccaaacatcgactgtcaataNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNATATCAACAGTCAATATCCAGAC
ATCAGCAGTCAATTAAATAATCTCAACAGTTGATCaaaagtattgacagt
cgatgtttggatattgactgctGATGTCTAGATATTGACTGTTGATATCT
GGatattgacagttgatgaaaagtattgacagtcgatgtttggatattga
ctgtccataaaaatgattgactgtggataaaaaacatcaaccaTGTCCAC
AATTGATGTTTTAAGACCTAGTAGTGACATAAGAATCACGAAAAATCACA
TTGTACACTGTTTTTTTGCAATCTCTGCTGCACCTTCAAATTTCAGACTA
AAGCCATCAGCGCAGCAGATGATCAGTCTATCACAATCTTCGATATTTGG
CATGCAAGAGAGTGCTTTAAAGCACCAGCTTTTTTAGACCTTTGTTGTTT
ACCCGGATGTCATAAGCCCATGTTGGCTAAGTACCCCAGACTCAAATCTC
ACTTCGGATATTAAAATCATTTGAGGcagggggggtcagtactaaaatgt
aagacatacatgagtactaaaaggattttcgctaatttttgacatacccc
cacctatttttcgaaaatgttattttagtacacatgtactaaaattattt
tgagcaatttaacatagataccacccattttttgcccatttacggcttta
aatttaccaaaatggggtcattgttacaaacctagtcgaatttagtgcat
ctatctgcaaaataatataatttgattactaaactgtgctaaACTGTaca
tagaaatatttttaaaaaatatttaaaaaattggaaaaattctgaaagat
ttctgaagatttgttcaaaaattcctgagaaaaaaaaatcaaattatttc
caaaattgttaaaaaaatgctccattttgaCTGNTTTGTTCAAAAAttcc
tgagaaaaaaaatcaaattatttccaaaattgttaaaaagatgctccatt
ttgactaattttagaaaaaaatactaagatttttcaaatatttccacctt
tttggtattttagtacacatggtactaaaattatttttgagcttttttgc
agtaccaccacgtcactaaatgtcatgatgtccgagattttagtaccgac
ccccccccctgtttgaGGAGTTTACTAGCAGGTAGATGTCAAAACTGTAA
TAACTAAATCCAAATTTTCTCTTTATAACAGCAGAAAGAAATAAGAAATc
gataaattcaaaaataaataacaaatgTCTGATATGTCACaaccaaataa
aagaaaagaagtTGATTTGAAGAAATTTATACATGCTATCCAGGAAGGCT
CAGGTATCATACTTTTTTTGGTCCCATGACTTAACTCGTCAAACATTTTG
ATTTGTGCAGTCTTTTATTAAAGGATCAATCAATATCATAATTACAGTac
tacatttttttcatttcactgaagattgccatcctggatgacatgaaact
ttgagtatgaaattaacttaaatcgttttctttactcaaactagtacATT
TTTAGTGAtgtgaatttcaaaatttttgtttttatttttgtcactttcAA
TGACACTTTCACAGATAATTATATTCATCACACTTTATTTTGAACAGATC
ATGAATATTGTTCCCAATCCACCCAACAACAAGAAGAACCAGAGGTTATC
AGTGAGGAAATAGTAACTCTTGAGACATCATCTCAGAATGACCAAGCTGA
TATACAGAATCGCTGTGGTAAAGAATAAAACTActattttttggatttca
atttgaaatgaatGATTATATTTTAAAGAATTGATTGTCTTTTTATCCTC
ACTTGTGGAAAgctaaataatttttgaaatgaacATTTGAAGGGAATGAA
CAGACTGATCAACTTTCggcaaaaattttctccgatTGTTCACCCAAGTt
cgaaatattttgtttatttttcatttatatatTGCCTTGTACTGTGTTTC
ATCACTTCTTCATTCTTAGAATAGGCTCCAAAATTACAAAGAATCTTTAA
TCCTGCCAAGATAATAACTGCAGGGATGAAGTTTTTACATATTATGAAAA
TGTATATTCTTTTATAATATCAGAGCAACAACCTGCGGATATCATTACTT
TCCAAACATGGTCAGAAACAGAAAATGCCATAAAGCAGTTTGAACGAAAA
ACCAAAACACGATATCCTGTTTATAGAAAATCAGCTGGGTTCAACTCCGA
AGGTATACTTGAAGCCATCTCTATAAAAATATGCTGCTAGCTTTCTCATT
Gattgaatattgaaatattttaaaatgaataaaagagctctcaaaataat
ttaaaaatttttgaaaaagttgctgttatttttttgaagacaacTCTTTA
AAAAGTCAGTAAATTTTTAGATGTTATCTagctaaaattttaattttttg
tgctATTGTCAACTGAAATATATCGTTAATTCTCTTTTTACAATTTATTA
AATCCATAGAAATCACCTTAAAAGGACGGAAGATTCTTTTCCAAGACAAC
AAATCGACCAAAGGACGTGAGAGGCAAATCCAATTTGATGGCATTCCCTT
CATAATAATGGGGACAAAGCAATTCGATTGTGACTATCACAAAGATCGGT
ATACCCAGGGAAGGAAAAGGAAACGCCTGGAAGCAGGAGTTATACCCAAA
AAGGTAAGTATGTTGAACGATGATATAGATTGCGTCCTTTCTGGTATtcg
attttttaatttatttaatattttgatttcgaATTTTACCAGAAAGGTAT
ATTAGGCTATGCACCACTGCGATGACTTCAGCGGAATCATTTCGGTTTTC
TGTAAATTTTTCATCCATACTgccattattttcaaaacaccATTCACTGA
TGTTTATCATTTGTAGGTCGTCAAAAGCAAGAAAGGAAATTGTCCATGTG
AAATCATTGTCAGAGACATTGTTGCTTTCCCTGAATTCAAGGTATGAAGA
AATATTTAAAGCTGCCACCACTCTTTTTTACTTAATAGCTCGAAAATTAC
ATTGCGAAGAAGGTTTCAGTTGAAAAAGGTACTTAACTATgttgattgat
ttgaaaatttctttaggtGTTGGAGCTCTTGTTATTATCACCTCTCTCAA
CTTTCGAGAGACTTTGTTACATACAATTCAAGTTTCAGTATCTCAAAAAA
TAACATTAAATCAAATAATACCCTAGTAGcgttttctttcttcttttaga
tCACTAGACCAACAGAGAGAATTAAAAGAACTTGTTGTACAAAGTTGAAA
GTACAATTTGAGAAGGCTTTGCCAAGGTTTGAACGATTTTTCATCACACA
ATTTCCATCTCCAAACGATCATGTTGGTCATGAGGTGAGTTATCTTCAAT
GGTTTCCAAATATTTATATCTACGGCCAGTTTGGTAGCATTAAATTCTTT
AAAGAGGCTAGAATCAACAAAGAAAGTGAGTTTTATGAGCTTCATAGGGA
CTGTCATCAAAGAGGCGAGATTGATTTTTGCCATTTGCTGGCAGCCCATA
AGATGACTTGGAAAATAAGATACTGTCATTTTTGTGAATCTTAAGTAAAC
CTTATTAAGGGATTCCCTTTATTAAGGTTTGCACATCCCTATTAGTTTTA
AACTTCATTGGTTATGGTAGGACATTTCTAAACAACGAATCAGGGCACAA
GCCTAAATGATTGTCCATCTTTTAACAGGTTGAAGCAGTTGAAGTAGTCA
AACCACCTAGTGATATGTGTCGTGAACTGACCGACAGAATTGCAGGGTTG
AGCGTTTTGCTAGAAGAAAATACAGATTTGATGGAAGATGTGAACAATAC
ACTTCTCAGTTTGGTGCAGAAAATGGAATCGTCTTTGGTGTTGATTTAGG
TTCCAGTTGACCAGGAAAATCCTCTACAACCAACTTGATTAGTCGAACAA
TTATCAGGTGCTAAAGATGTAGACGGTGTTGGATTTACCATCTCTTTCTC
ACGCTAAGTCAAAAGTGGAATATTGCCAATAGCATCGGCTAAGAGAAACC
AACCTTGCTCTCCCAACGACATAGTTTATTTGGTAGACCCTCATCTTCTC
AAAAAATATCGTTAGCCTTGCTTCAGAGTGACCAGGAGAAAATCTTGTac
tcaggcaaaaataaaaaaaatgtagtgtttccggaaacccgtcgggtgaa
aaaaaaaattctgacccagccgcagactatgggttcattaTGGTTCATCA
GAAAGAAAATTAAGTTGACCGTTTAAGCTATCAAAtgtcgtttggttaga
tattcccgcttgtaaatcaagttttgtttgttaatagtagatacattagt
attcatggCTTACTTCGTTCTGTTTGTAcctaaaagttatctttaaagtt
ctatttcaatgatcttaagttatcaaaaatagcaacaaaaaaagtttttc
cggccggccgcatgagagcttttttccttcacccgcattccggaaacacc
acatttttttattttcggcTCAAGTAGATCAATTTCTCACACAGCATAAC
AAAGAGAACGCTACTTGCTTTCAAAATATGGATATCaaagtattatattt
ttttgaaaaatggataTAAGGCTGGCTAGAATTTGGACCGACAGTGTAGA
AGAAGCTGGAAAACGTTTTGGCAACATTTGATGTCGATGTAAGGTATTAG
TGTGCTTCCGATTTCAGTGGCATTACCGAAAATAATTCATCTTTATGATT
TCTTATAAgttaaaattggaaatttttcaCTTGGTGGATAGATCGGTAAT
GAATTGTGTTATGATGAATGTCGCTTAAAATCCATGCTAATGCACCTAAG
TAGTATTTCGTCAAAGGTTTGAATCCTCGCCCGGATGTATTTCCCTtttt
gagaagaaaaattacgAGGGTTCTGATTTTAGGAGCTCGATGTTGGCATA
AGCATAAGGCCAAATGGAGAATTGGTTATTGCCATATACAACATTTATGA
TGGATTTTAGAAAATGGTTAAAGCTGTGTTTGGTTGCTTGCTAATATTTC
GACACCACAAATGGTTTCCTTTTACTNCAAAGTATTTGTTGAGAATGGAT
ACGGCTGGCTAAAATTTGGACCGACAGTGTAGAAGAAGCTCGAAAACGTT
TTGGCAACATTTGATGCCGATGTGAGGTATTAGTGTGCTTCCGATTTCAG
TGACATTACCGAAAATAATTCATCTTTATGATTTCTTATAAGTTTAAATT
GGAAATTTTTCACTTGGTGGATAGATCAGTAACGAATTGTGTTATGAATG
TTACTGAAAATCCATGCCAATGCACATAATATTTCGTCAAAGGTATGGAT
CCTCACCATGCTTGCTAATAATTCGACACCACCAACGGTTTACTTTCACT
GAATTCTACTTGAATGAAATTATGTGTTTAATCTTATGAAATGAACTGTT
AAAATGGTTGGAttataaagaaatataatttttctgtTTACCTTTAAAGA
GGCCCCTCCCCCtagcggtaactctgatcacgatatcacacaattttttg
tcttcagtcacgatcacgaaaatcag

Coding sequence (CDS) from alignment at sc0000391:163940..175015+

>TCONS_00021636 ID=TCONS_00021636|Name=TCONS_00021636|organism=Clytia hemisphaerica|type=CDS|length=6321bp|location=Sequence derived from alignment at sc0000391:163940..175015+ (Clytia hemisphaerica)
atgTCTGATATGTCACaaccaaataaaagaaaagaagtTGATTTGAAGAA
ATTTATACATGCTATCCAGGAAGGCTCAGATCATGAATATTGTTCCCAAT
CCACCCAACAACAAGAAGAACCAGAGGTTATCAGTGAGGAAATAGTAACT
CTTGAGACATCATCTCAGAATGACCAAGCTGATATACAGAATCGCTGTGA
GCAACAACCTGCGGATATCATTACTTTCCAAACATGGTCAGAAACAGAAA
ATGCCATAAAGCAGTTTGAACGAAAAACCAAAACACGATATCCTGTTTAT
AGAAAATCAGCTGGGTTCAACTCCGAAGAAATCACCTTAAAAGGACGGAA
GATTCTTTTCCAAGACAACAAATCGACCAAAGGACGTGAGAGGCAAATCC
AATTTGATGGCATTCCCTTCATAATAATGGGGACAAAGCAATTCGATTGT
GACTATCACAAAGATCGGTATACCCAGGGAAGGAAAAGGAAACGCCTGGA
AGCAGGAGTTATACCCAAAAAGGTCGTCAAAAGCAAGAAAGGAAATTGTC
CATGTGAAATCATTGTCAGAGACATTGTTGCTTTCCCTGAATTCAAGatC
ACTAGACCAACAGAGAGAATTAAAAGAACTTGTTGTACAAAGTTGAAAGT
ACAATTTGAGAAGGCTTTGCCAAGGTTTGAACGATTTTTCATCACACAAT
TTCCATCTCCAAACGATCATGTTGGTCATGAGGTTGAAGCAGTTGAAGTA
GTCAAACCACCTAGTGATATGTGTCGTGAACTGACCGACAGAATTGCAGG
GTTGAGCGTTTTGCTAGAAGAAAATACAGATTTGATGGAAGATGTGAACA
ATACACTTCTCAGTTTGGTGCAGAAAATGGAATCGTCTTTGGTGTTGATT
TAGatgTCTGATATGTCACaaccaaataaaagaaaagaagtTGATTTGAA
GAAATTTATACATGCTATCCAGGAAGGCTCAGATCATGAATATTGTTCCC
AATCCACCCAACAACAAGAAGAACCAGAGGTTATCAGTGAGGAAATAGTA
ACTCTTGAGACATCATCTCAGAATGACCAAGCTGATATACAGAATCGCTG
TGAGCAACAACCTGCGGATATCATTACTTTCCAAACATGGTCAGAAACAG
AAAATGCCATAAAGCAGTTTGAACGAAAAACCAAAACACGATATCCTGTT
TATAGAAAATCAGCTGGGTTCAACTCCGAAGAAATCACCTTAAAAGGACG
GAAGATTCTTTTCCAAGACAACAAATCGACCAAAGGACGTGAGAGGCAAA
TCCAATTTGATGGCATTCCCTTCATAATAATGGGGACAAAGCAATTCGAT
TGTGACTATCACAAAGATCGGTATACCCAGGGAAGGAAAAGGAAACGCCT
GGAAGCAGGAGTTATACCCAAAAAGGTCGTCAAAAGCAAGAAAGGAAATT
GTCCATGTGAAATCATTGTCAGAGACATTGTTGCTTTCCCTGAATTCAAG
atCACTAGACCAACAGAGAGAATTAAAAGAACTTGTTGTACAAAGTTGAA
AGTACAATTTGAGAAGGCTTTGCCAAGGTTTGAACGATTTTTCATCACAC
AATTTCCATCTCCAAACGATCATGTTGGTCATGAGGTTGAAGCAGTTGAA
GTAGTCAAACCACCTAGTGATATGTGTCGTGAACTGACCGACAGAATTGC
AGGGTTGAGCGTTTTGCTAGAAGAAAATACAGATTTGATGGAAGATGTGA
ACAATACACTTCTCAGTTTGGTGCAGAAAATGGAATCGTCTTTGGTGTTG
ATTTAGatgTCTGATATGTCACaaccaaataaaagaaaagaagtTGATTT
GAAGAAATTTATACATGCTATCCAGGAAGGCTCAGATCATGAATATTGTT
CCCAATCCACCCAACAACAAGAAGAACCAGAGGTTATCAGTGAGGAAATA
GTAACTCTTGAGACATCATCTCAGAATGACCAAGCTGATATACAGAATCG
CTGTGAGCAACAACCTGCGGATATCATTACTTTCCAAACATGGTCAGAAA
CAGAAAATGCCATAAAGCAGTTTGAACGAAAAACCAAAACACGATATCCT
GTTTATAGAAAATCAGCTGGGTTCAACTCCGAAGAAATCACCTTAAAAGG
ACGGAAGATTCTTTTCCAAGACAACAAATCGACCAAAGGACGTGAGAGGC
AAATCCAATTTGATGGCATTCCCTTCATAATAATGGGGACAAAGCAATTC
GATTGTGACTATCACAAAGATCGGTATACCCAGGGAAGGAAAAGGAAACG
CCTGGAAGCAGGAGTTATACCCAAAAAGGTCGTCAAAAGCAAGAAAGGAA
ATTGTCCATGTGAAATCATTGTCAGAGACATTGTTGCTTTCCCTGAATTC
AAGatCACTAGACCAACAGAGAGAATTAAAAGAACTTGTTGTACAAAGTT
GAAAGTACAATTTGAGAAGGCTTTGCCAAGGTTTGAACGATTTTTCATCA
CACAATTTCCATCTCCAAACGATCATGTTGGTCATGAGGTTGAAGCAGTT
GAAGTAGTCAAACCACCTAGTGATATGTGTCGTGAACTGACCGACAGAAT
TGCAGGGTTGAGCGTTTTGCTAGAAGAAAATACAGATTTGATGGAAGATG
TGAACAATACACTTCTCAGTTTGGTGCAGAAAATGGAATCGTCTTTGGTG
TTGATTTAGatgTCTGATATGTCACaaccaaataaaagaaaagaagtTGA
TTTGAAGAAATTTATACATGCTATCCAGGAAGGCTCAGATCATGAATATT
GTTCCCAATCCACCCAACAACAAGAAGAACCAGAGGTTATCAGTGAGGAA
ATAGTAACTCTTGAGACATCATCTCAGAATGACCAAGCTGATATACAGAA
TCGCTGTGAGCAACAACCTGCGGATATCATTACTTTCCAAACATGGTCAG
AAACAGAAAATGCCATAAAGCAGTTTGAACGAAAAACCAAAACACGATAT
CCTGTTTATAGAAAATCAGCTGGGTTCAACTCCGAAGAAATCACCTTAAA
AGGACGGAAGATTCTTTTCCAAGACAACAAATCGACCAAAGGACGTGAGA
GGCAAATCCAATTTGATGGCATTCCCTTCATAATAATGGGGACAAAGCAA
TTCGATTGTGACTATCACAAAGATCGGTATACCCAGGGAAGGAAAAGGAA
ACGCCTGGAAGCAGGAGTTATACCCAAAAAGGTCGTCAAAAGCAAGAAAG
GAAATTGTCCATGTGAAATCATTGTCAGAGACATTGTTGCTTTCCCTGAA
TTCAAGatCACTAGACCAACAGAGAGAATTAAAAGAACTTGTTGTACAAA
GTTGAAAGTACAATTTGAGAAGGCTTTGCCAAGGTTTGAACGATTTTTCA
TCACACAATTTCCATCTCCAAACGATCATGTTGGTCATGAGGTTGAAGCA
GTTGAAGTAGTCAAACCACCTAGTGATATGTGTCGTGAACTGACCGACAG
AATTGCAGGGTTGAGCGTTTTGCTAGAAGAAAATACAGATTTGATGGAAG
ATGTGAACAATACACTTCTCAGTTTGGTGCAGAAAATGGAATCGTCTTTG
GTGTTGATTTAGatgTCTGATATGTCACaaccaaataaaagaaaagaagt
TGATTTGAAGAAATTTATACATGCTATCCAGGAAGGCTCAGATCATGAAT
ATTGTTCCCAATCCACCCAACAACAAGAAGAACCAGAGGTTATCAGTGAG
GAAATAGTAACTCTTGAGACATCATCTCAGAATGACCAAGCTGATATACA
GAATCGCTGTGAGCAACAACCTGCGGATATCATTACTTTCCAAACATGGT
CAGAAACAGAAAATGCCATAAAGCAGTTTGAACGAAAAACCAAAACACGA
TATCCTGTTTATAGAAAATCAGCTGGGTTCAACTCCGAAGAAATCACCTT
AAAAGGACGGAAGATTCTTTTCCAAGACAACAAATCGACCAAAGGACGTG
AGAGGCAAATCCAATTTGATGGCATTCCCTTCATAATAATGGGGACAAAG
CAATTCGATTGTGACTATCACAAAGATCGGTATACCCAGGGAAGGAAAAG
GAAACGCCTGGAAGCAGGAGTTATACCCAAAAAGGTCGTCAAAAGCAAGA
AAGGAAATTGTCCATGTGAAATCATTGTCAGAGACATTGTTGCTTTCCCT
GAATTCAAGatCACTAGACCAACAGAGAGAATTAAAAGAACTTGTTGTAC
AAAGTTGAAAGTACAATTTGAGAAGGCTTTGCCAAGGTTTGAACGATTTT
TCATCACACAATTTCCATCTCCAAACGATCATGTTGGTCATGAGGTTGAA
GCAGTTGAAGTAGTCAAACCACCTAGTGATATGTGTCGTGAACTGACCGA
CAGAATTGCAGGGTTGAGCGTTTTGCTAGAAGAAAATACAGATTTGATGG
AAGATGTGAACAATACACTTCTCAGTTTGGTGCAGAAAATGGAATCGTCT
TTGGTGTTGATTTAGatgTCTGATATGTCACaaccaaataaaagaaaaga
agtTGATTTGAAGAAATTTATACATGCTATCCAGGAAGGCTCAGATCATG
AATATTGTTCCCAATCCACCCAACAACAAGAAGAACCAGAGGTTATCAGT
GAGGAAATAGTAACTCTTGAGACATCATCTCAGAATGACCAAGCTGATAT
ACAGAATCGCTGTGAGCAACAACCTGCGGATATCATTACTTTCCAAACAT
GGTCAGAAACAGAAAATGCCATAAAGCAGTTTGAACGAAAAACCAAAACA
CGATATCCTGTTTATAGAAAATCAGCTGGGTTCAACTCCGAAGAAATCAC
CTTAAAAGGACGGAAGATTCTTTTCCAAGACAACAAATCGACCAAAGGAC
GTGAGAGGCAAATCCAATTTGATGGCATTCCCTTCATAATAATGGGGACA
AAGCAATTCGATTGTGACTATCACAAAGATCGGTATACCCAGGGAAGGAA
AAGGAAACGCCTGGAAGCAGGAGTTATACCCAAAAAGGTCGTCAAAAGCA
AGAAAGGAAATTGTCCATGTGAAATCATTGTCAGAGACATTGTTGCTTTC
CCTGAATTCAAGatCACTAGACCAACAGAGAGAATTAAAAGAACTTGTTG
TACAAAGTTGAAAGTACAATTTGAGAAGGCTTTGCCAAGGTTTGAACGAT
TTTTCATCACACAATTTCCATCTCCAAACGATCATGTTGGTCATGAGGTT
GAAGCAGTTGAAGTAGTCAAACCACCTAGTGATATGTGTCGTGAACTGAC
CGACAGAATTGCAGGGTTGAGCGTTTTGCTAGAAGAAAATACAGATTTGA
TGGAAGATGTGAACAATACACTTCTCAGTTTGGTGCAGAAAATGGAATCG
TCTTTGGTGTTGATTTAGatgTCTGATATGTCACaaccaaataaaagaaa
agaagtTGATTTGAAGAAATTTATACATGCTATCCAGGAAGGCTCAGATC
ATGAATATTGTTCCCAATCCACCCAACAACAAGAAGAACCAGAGGTTATC
AGTGAGGAAATAGTAACTCTTGAGACATCATCTCAGAATGACCAAGCTGA
TATACAGAATCGCTGTGAGCAACAACCTGCGGATATCATTACTTTCCAAA
CATGGTCAGAAACAGAAAATGCCATAAAGCAGTTTGAACGAAAAACCAAA
ACACGATATCCTGTTTATAGAAAATCAGCTGGGTTCAACTCCGAAGAAAT
CACCTTAAAAGGACGGAAGATTCTTTTCCAAGACAACAAATCGACCAAAG
GACGTGAGAGGCAAATCCAATTTGATGGCATTCCCTTCATAATAATGGGG
ACAAAGCAATTCGATTGTGACTATCACAAAGATCGGTATACCCAGGGAAG
GAAAAGGAAACGCCTGGAAGCAGGAGTTATACCCAAAAAGGTCGTCAAAA
GCAAGAAAGGAAATTGTCCATGTGAAATCATTGTCAGAGACATTGTTGCT
TTCCCTGAATTCAAGatCACTAGACCAACAGAGAGAATTAAAAGAACTTG
TTGTACAAAGTTGAAAGTACAATTTGAGAAGGCTTTGCCAAGGTTTGAAC
GATTTTTCATCACACAATTTCCATCTCCAAACGATCATGTTGGTCATGAG
GTTGAAGCAGTTGAAGTAGTCAAACCACCTAGTGATATGTGTCGTGAACT
GACCGACAGAATTGCAGGGTTGAGCGTTTTGCTAGAAGAAAATACAGATT
TGATGGAAGATGTGAACAATACACTTCTCAGTTTGGTGCAGAAAATGGAA
TCGTCTTTGGTGTTGATTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012131XLOC_012131Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021636-proteinTCONS_00021636-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021636-exon-sc0000391-1491911889:163940..163947TCONS_00021636-exon-sc0000391-1491911889:163940..163947Clytia hemisphaericaexon
TCONS_00021636-exon-sc0000391-1510915933:163940..163947TCONS_00021636-exon-sc0000391-1510915933:163940..163947Clytia hemisphaericaexon
TCONS_00021636-exon-sc0000391-1575043694:163940..163947TCONS_00021636-exon-sc0000391-1575043694:163940..163947Clytia hemisphaericaexon
TCONS_00021636-exon-sc0000391-1491911889:170671..170792TCONS_00021636-exon-sc0000391-1491911889:170671..170792Clytia hemisphaericaexon
TCONS_00021636-exon-sc0000391-1510915933:170671..170792TCONS_00021636-exon-sc0000391-1510915933:170671..170792Clytia hemisphaericaexon
TCONS_00021636-exon-sc0000391-1575043694:170671..170792TCONS_00021636-exon-sc0000391-1575043694:170671..170792Clytia hemisphaericaexon
TCONS_00021636-exon-sc0000391-1491911889:171087..171206TCONS_00021636-exon-sc0000391-1491911889:171087..171206Clytia hemisphaericaexon
TCONS_00021636-exon-sc0000391-1510915933:171087..171206TCONS_00021636-exon-sc0000391-1510915933:171087..171206Clytia hemisphaericaexon
TCONS_00021636-exon-sc0000391-1575043694:171087..171206TCONS_00021636-exon-sc0000391-1575043694:171087..171206Clytia hemisphaericaexon
TCONS_00021636-exon-sc0000391-1491911889:171563..171691TCONS_00021636-exon-sc0000391-1491911889:171563..171691Clytia hemisphaericaexon
TCONS_00021636-exon-sc0000391-1510915933:171563..171691TCONS_00021636-exon-sc0000391-1510915933:171563..171691Clytia hemisphaericaexon
TCONS_00021636-exon-sc0000391-1575043694:171563..171691TCONS_00021636-exon-sc0000391-1575043694:171563..171691Clytia hemisphaericaexon
TCONS_00021636-exon-sc0000391-1491911889:171949..172142TCONS_00021636-exon-sc0000391-1491911889:171949..172142Clytia hemisphaericaexon
TCONS_00021636-exon-sc0000391-1510915933:171949..172142TCONS_00021636-exon-sc0000391-1510915933:171949..172142Clytia hemisphaericaexon
TCONS_00021636-exon-sc0000391-1575043694:171949..172142TCONS_00021636-exon-sc0000391-1575043694:171949..172142Clytia hemisphaericaexon
TCONS_00021636-exon-sc0000391-1491911889:172356..172430TCONS_00021636-exon-sc0000391-1491911889:172356..172430Clytia hemisphaericaexon
TCONS_00021636-exon-sc0000391-1510915933:172356..172430TCONS_00021636-exon-sc0000391-1510915933:172356..172430Clytia hemisphaericaexon
TCONS_00021636-exon-sc0000391-1575043694:172356..172430TCONS_00021636-exon-sc0000391-1575043694:172356..172430Clytia hemisphaericaexon
TCONS_00021636-exon-sc0000391-1491911889:172689..172823TCONS_00021636-exon-sc0000391-1491911889:172689..172823Clytia hemisphaericaexon
TCONS_00021636-exon-sc0000391-1510915933:172689..172823TCONS_00021636-exon-sc0000391-1510915933:172689..172823Clytia hemisphaericaexon
TCONS_00021636-exon-sc0000391-1575043694:172689..172823TCONS_00021636-exon-sc0000391-1575043694:172689..172823Clytia hemisphaericaexon
TCONS_00021636-exon-sc0000391-1491911889:173168..174114TCONS_00021636-exon-sc0000391-1491911889:173168..174114Clytia hemisphaericaexon
TCONS_00021636-exon-sc0000391-1510915933:173168..174114TCONS_00021636-exon-sc0000391-1510915933:173168..174114Clytia hemisphaericaexon
TCONS_00021636-exon-sc0000391-1575043694:173168..174114TCONS_00021636-exon-sc0000391-1575043694:173168..174114Clytia hemisphaericaexon
TCONS_00021636-exon-sc0000391-1491911889:174598..175015TCONS_00021636-exon-sc0000391-1491911889:174598..175015Clytia hemisphaericaexon
TCONS_00021636-exon-sc0000391-1510915933:174598..175015TCONS_00021636-exon-sc0000391-1510915933:174598..175015Clytia hemisphaericaexon
TCONS_00021636-exon-sc0000391-1575043694:174598..175015TCONS_00021636-exon-sc0000391-1575043694:174598..175015Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000391supercontigsc0000391:163940..175015 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.0276	15.3357	6.09573	7.09631	4.74572	0.932727	6.60741	3.33002	6.64834	1.03321	4.60021	3.49785	4.04194	2.21703	5.30683	5.47063	5.09409	5.9081	2.30605	4.46022	4.9038	5.23036	7.29593	8.99652	0.000498456	2.56582	4.74372	3.30892	3.18995	3.78805
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029309CaRF
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021636 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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