|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021622 ID=TCONS_00021622|Name=TCONS_00021622|organism=Clytia hemisphaerica|type=transcript|length=1200bp
NTAGGCATTAAACATCGGTTGAAAACTGTAACTTTCGTACGTGTTGTCAA
ATCATGGTTGTTGAAGACTCTGTCTTTTAGTCTGCCGAATGCACAAGATG
TGGCTTGAATACGTGTGATCAATTCATCTTTGAGATTCGATTCTTTAGAC
AATATACTTCCGAGATATTTGAAACGGTCGGTACATTTTAGTTTCGTTTC
GTCAATAAAGAAGTCACATTCAGGACCTAGGCACATAACCTCAGTCTTTT
TGGCGTTTATTTGCAGACCGAATCTCTTGGCAGTAAGATGGTAGCTTGTT
AGTAGAGATTGCAGTCCTTCGGACGTATCACTGAACACAGCGATGTCATC
GGCATATTGAGCTTCACGGATATACATGTGGAAagttttcgttttcgctt
tTAACTTTCTTAGGTCGAAGAGGTTGCCATCCATTCGGAAACATACGTAA
ATTGAATGTTCTGTGTTATCTTTGAAAGCGATCCAAAGGGCTATCGCTGC
ATATAAACCGTAGAGGGTAGGGGCTAATTTACAACCTTGCTTCACACCAC
AATCGTAGTTGAAAGGCTTCGAAAGTTCACCTTCAATGATGAGTCTCGCT
TTGACATCTGAATATAGCAGCTGGATTGCTTTAAGAAGATTTGGCGGACA
TCCGATTTTGAAGAGAAGTTTAAATAAAAGGGGACGATTGACAGTATCAA
ACGCTTTCGTGAAATCAATGAAAACGATATACAGGTTACGACATTGCTCT
CTAGATTTCTCCATTAGCTGACGAACCGTGAAAATGCCGTCGATTGTGCC
ACGTTCGCTACGATAACCGTGTTNTTATTGCATCGTCAAGCTCTTTTTCG
GTGATCGGTTCATCAAGTGAGTAATCGATAGGACGTTGATCGATTTCATC
AAGAACTGTTTCGTCGGTTTCTGTGACGTTGTTGAGAAGTTCTGAAAAGT
GTTCGACCCAGCGTTCCTTTATTTCACCTTTGGTTGTTAGCAATTTCCCG
TCTTTCGATTTGATAGGGTGTGAATTGCGAGATGAAGGACCGTATACCTC
ACGAAGAGTAGCTTAAAAGTCTTTCAGATTGTTTTCCAAACGATATCTTC
CAGCTTCTGACGCTTTTTGGATGAACcaatcattttttatctttctcacT
TCTTGTTGGATCTCACGTCTGGTTCGATTTTTGTCTTTAAGAAGTGTAAG Run BLAST on NCBI protein sequence of TCONS_00021622-protein >TCONS_00021622-protein ID=TCONS_00021622-protein|Name=TCONS_00021622-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
MEKSREQCRNLYIVFIDFTKAFDTVNRPLLFKLLFKIGCPPNLLKAIQLL
YSDVKARLIIEGELSKPFNYDCGVKQGCKLAPTLYGLYAAIALWIAFKDN
TEHSIYVCFRMDGNLFDLRKLKAKTKTFHMYIREAQYADDIAVFSDTSEG
LQSLLTSYHLTAKRFGLQINAKKTEVMCLGPECDFFIDETKLKCTDRFKY
LGSILSKESNLKDELITRIQATSCAFGRLKDRVFNNHDLTTRTKVTVFNR
CLMP Run BLAST on NCBI transcript from alignment at sc0000390:65111..66310 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021622 ID=TCONS_00021622|Name=TCONS_00021622|organism=Clytia hemisphaerica|type=transcript|length=1200bp|location=Sequence derived from alignment at sc0000390:65111..66310 (Clytia hemisphaerica)
CTTACACTTCTTAAAGACAAAAATCGAACCAGACGTGAGATCCAACAAGA
AgtgagaaagataaaaaatgattgGTTCATCCAAAAAGCGTCAGAAGCTG
GAAGATATCGTTTGGAAAACAATCTGAAAGACTTTTAAGCTACTCTTCGT
GAGGTATACGGTCCTTCATCTCGCAATTCACACCCTATCAAATCGAAAGA
CGGGAAATTGCTAACAACCAAAGGTGAAATAAAGGAACGCTGGGTCGAAC
ACTTTTCAGAACTTCTCAACAACGTCACAGAAACCGACGAAACAGTTCTT
GATGAAATCGATCAACGTCCTATCGATTACTCACTTGATGAACCGATCAC
CGAAAAAGAGCTTGACGATGCAATAANAACACGGTTATCGTAGCGAACGT
GGCACAATCGACGGCATTTTCACGGTTCGTCAGCTAATGGAGAAATCTAG
AGAGCAATGTCGTAACCTGTATATCGTTTTCATTGATTTCACGAAAGCGT
TTGATACTGTCAATCGTCCCCTTTTATTTAAACTTCTCTTCAAAATCGGA
TGTCCGCCAAATCTTCTTAAAGCAATCCAGCTGCTATATTCAGATGTCAA
AGCGAGACTCATCATTGAAGGTGAACTTTCGAAGCCTTTCAACTACGATT
GTGGTGTGAAGCAAGGTTGTAAATTAGCCCCTACCCTCTACGGTTTATAT
GCAGCGATAGCCCTTTGGATCGCTTTCAAAGATAACACAGAACATTCAAT
TTACGTATGTTTCCGAATGGATGGCAACCTCTTCGACCTAAGAAAGTTAa
aagcgaaaacgaaaactTTCCACATGTATATCCGTGAAGCTCAATATGCC
GATGACATCGCTGTGTTCAGTGATACGTCCGAAGGACTGCAATCTCTACT
AACAAGCTACCATCTTACTGCCAAGAGATTCGGTCTGCAAATAAACGCCA
AAAAGACTGAGGTTATGTGCCTAGGTCCTGAATGTGACTTCTTTATTGAC
GAAACGAAACTAAAATGTACCGACCGTTTCAAATATCTCGGAAGTATATT
GTCTAAAGAATCGAATCTCAAAGATGAATTGATCACACGTATTCAAGCCA
CATCTTGTGCATTCGGCAGACTAAAAGACAGAGTCTTCAACAACCATGAT
TTGACAACACGTACGAAAGTTACAGTTTTCAACCGATGTTTAATGCCTAN
Coding sequence (CDS) from alignment at sc0000390:65111..66310 >TCONS_00021622 ID=TCONS_00021622|Name=TCONS_00021622|organism=Clytia hemisphaerica|type=CDS|length=762bp|location=Sequence derived from alignment at sc0000390:65111..66310 (Clytia hemisphaerica)
ATGGAGAAATCTAGAGAGCAATGTCGTAACCTGTATATCGTTTTCATTGA
TTTCACGAAAGCGTTTGATACTGTCAATCGTCCCCTTTTATTTAAACTTC
TCTTCAAAATCGGATGTCCGCCAAATCTTCTTAAAGCAATCCAGCTGCTA
TATTCAGATGTCAAAGCGAGACTCATCATTGAAGGTGAACTTTCGAAGCC
TTTCAACTACGATTGTGGTGTGAAGCAAGGTTGTAAATTAGCCCCTACCC
TCTACGGTTTATATGCAGCGATAGCCCTTTGGATCGCTTTCAAAGATAAC
ACAGAACATTCAATTTACGTATGTTTCCGAATGGATGGCAACCTCTTCGA
CCTAAGAAAGTTAaaagcgaaaacgaaaactTTCCACATGTATATCCGTG
AAGCTCAATATGCCGATGACATCGCTGTGTTCAGTGATACGTCCGAAGGA
CTGCAATCTCTACTAACAAGCTACCATCTTACTGCCAAGAGATTCGGTCT
GCAAATAAACGCCAAAAAGACTGAGGTTATGTGCCTAGGTCCTGAATGTG
ACTTCTTTATTGACGAAACGAAACTAAAATGTACCGACCGTTTCAAATAT
CTCGGAAGTATATTGTCTAAAGAATCGAATCTCAAAGATGAATTGATCAC
ACGTATTCAAGCCACATCTTGTGCATTCGGCAGACTAAAAGACAGAGTCT
TCAACAACCATGATTTGACAACACGTACGAAAGTTACAGTTTTCAACCGA
TGTTTAATGCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021622-exon-sc0000390-1491911889:65111..66310 | TCONS_00021622-exon-sc0000390-1491911889:65111..66310 | Clytia hemisphaerica | exon |
| TCONS_00021622-exon-sc0000390-1510915933:65111..66310 | TCONS_00021622-exon-sc0000390-1510915933:65111..66310 | Clytia hemisphaerica | exon |
| TCONS_00021622-exon-sc0000390-1575043694:65111..66310 | TCONS_00021622-exon-sc0000390-1575043694:65111..66310 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000390 | supercontig | sc0000390:65111..66310 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
|
