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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021618 ID=TCONS_00021618|Name=TCONS_00021618|organism=Clytia hemisphaerica|type=transcript|length=1777bp
CTTATGTTCAAAGTTCAAAAGAAAGAGAGAAGATTGCATTAAATAACAAT
GCAGGATAACGAAGATCAGATTTTACAAGCTTGGTATACGAAACGTAGAC
GAACAACTGTTATTGGTATCttacaaaaatgtatttttgcaTTCGAGTAT
TCTTCAGTTGCAGTGTCAGCTCTTTATTATTACCAAAATACATTTCAAGT
TCAAAATGCTCGTTTGTTTTATTCCATTACTATGGCTATCATGTATTTCT
CTGCAGCATTTTCTGCCACCTTTGTTGGACGTTACATGGACAAAACAAGA
AATCTGAGGCGAATTACAATGATGAGTGCTTTGCTTTCAATATCTGGAAA
TATTATCTATATTTTACCTTTCTCGAGGTATTTTCCAATATTAGCCCGCG
GGCTGTGTGGGATGGCTGATGGAATACAGCCTGCAATGTCAGGTGAATTC
TCGAGAGTTTACACCAAAGATGAACTTGGAAAAGTTTTATCCATCTATCA
CATTTCTGCATCACTCGTCTATGCTATTGCACCATCTACTCCAGCCCTTT
TCACTGATGTTCAATTTCATATTGGTCCCATTGAAATTAACCAATACAAT
TGTGTGGGCTTGGTCTTATCCATTGTATTATTGCTGTATGCTATACTGGC
ATTTATCAATGTCACTGACTTGACTAAAGAATCTGGCTATCAGATATTTA
TTAAAAGGTTTAAGCAGGAAAACAGTACAACAAAAGGTGATGGACACTCT
GGTGAGCGATTATGGTCTTTAATGGACACTGTCACCAATATTAACTTGTT
ATCCATTATCCTTCCAGATGGTTTCCTTGGGTTTGTATACTCCTTAATGG
AAGTCATCATCAATATGGTTGGTCTTTATAATTTCTCTTGGTCAATCACT
AGAGTGAGCACCTTAACTTGCATTGGTGCTATCATCTTCAGTACAGTGAT
GTTCTTATTCCAACAGCGTACTCTCAAAGGAAGATACATCTTCTATTTCC
TTTTCATCTCATGCTTCTCATTAGCAGCAATGGAATTGAGCTTGCTCAAT
ATTTCAATTCAGATACCAATTAATTCACAAGCATTGAAAATGGCTTTGTT
TGAGTCCTGTCTTGGATTAAACATCATTTTTGGCTTCGGTTCGACAGTTT
ATTCCAAGTGGTTATTATTCTCATTAGTACCTGTTAATTCCAAGAGTTAC
GTGGAATCGCATCGCTATATTGTTGCAAAAGTATGTTGCTGTACAGGCTT
CTTTACAGCTTCTTTCATTTATCAGCAAAGCTTCGAATGGTTCACCGTCC
TCATACTTTGTTGTTTCATCATTGCTTTCATCTTATTGCTCAGGAAGAAT
AGAtttcttcgaaaaattaaaGACTGATCTTTATTCGTTTTACCTACTTT
AATGGGATGAAATTTCGCGAGTGTtaaatttcacagatttcgcggatttg
gggttgtcatccgcgaaattaagtcgcAAATGGAAAATTGTAAAGGCCTT
ATCtgcagaaatatttttaaacaaaactaaaaaatgtcaaataaactact
tttcaaatgtttactggcatcaaagaagcgttaataatgtgtattgcaac
aaccaacatgctagacgatgctatcgtccgtttagaggtcagtagtaaac
gcgggaaagagttagggcgtaAGGGCGGTTTACAGGAAaaatagtggcgg
tagagttttggaacaaaacactgtaaacatctccgccactgcttactcca
cccgaatttatcacgcctctcctaaat Run BLAST on NCBI protein sequence of TCONS_00021618-protein >TCONS_00021618-protein ID=TCONS_00021618-protein|Name=TCONS_00021618-protein|organism=Clytia hemisphaerica|type=polypeptide|length=442bp
MQDNEDQILQAWYTKRRRTTVIGILQKCIFAFEYSSVAVSALYYYQNTFQ
VQNARLFYSITMAIMYFSAAFSATFVGRYMDKTRNLRRITMMSALLSISG
NIIYILPFSRYFPILARGLCGMADGIQPAMSGEFSRVYTKDELGKVLSIY
HISASLVYAIAPSTPALFTDVQFHIGPIEINQYNCVGLVLSIVLLLYAIL
AFINVTDLTKESGYQIFIKRFKQENSTTKGDGHSGERLWSLMDTVTNINL
LSIILPDGFLGFVYSLMEVIINMVGLYNFSWSITRVSTLTCIGAIIFSTV
MFLFQQRTLKGRYIFYFLFISCFSLAAMELSLLNISIQIPINSQALKMAL
FESCLGLNIIFGFGSTVYSKWLLFSLVPVNSKSYVESHRYIVAKVCCCTG
FFTASFIYQQSFEWFTVLILCCFIIAFILLLRKNRFLRKIKD Run BLAST on NCBI transcript from alignment at sc0000390:264523..266571- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021618 ID=TCONS_00021618|Name=TCONS_00021618|organism=Clytia hemisphaerica|type=transcript|length=2049bp|location=Sequence derived from alignment at sc0000390:264523..266571- (Clytia hemisphaerica)
CTTATGTTCAAAGTTCAAAAGAAAGAGAGAAGATTGCATTAAATAACAAT
GCAGGATAACGAAGATCAGATTTTACAAGCTTGGTATACGAAACGTAGAC
GAACAACTGTTATTGGTATCTTACAAAAATGTATTTTTGCATTCGAGTAT
TCTTCAGTTGCAGTGTCAGCTCTTTATTATTACCAAAATACATTTCAAGT
TCAAAATGCTCGTTTGTTTTATTCCATTACTATGGCTATCATGTATTTCT
CTGCAGCATTTTCTGCCACCTTTGTTGGACGTTACATGGACAAAACAAGA
AATCTGAGGCGAATTACAATGATGAGTGCTTTGCTTTCAATATCTGGAAA
TATTATCTATATTTTACCTTTCTCGAGGTATTTTCCAATATTAGCCCGCG
GGCTGTGTGGGATGGCTGATGGAATACAGCCTGCAATGTCAGGTATGTGT
CTTTACATTTTTACCTTTACATTCATCTGGTGAACTTTGAAATACTTGAA
TAAATCTCAGTTTTGTAAATTCTAGATTGCTCATTTTTGTGCCCTTAGTG
AATAATTGACCTAACCTGAGCAAAAGAAAACTTGAAATTTGAAGAAAAAA
AGTTTGATGATTTTGCTCAGGACCACCTAGGAGGGGACCTAGGAGTCCGA
CTTTTTCTAACAATAGCAAGAATTTTAAAATCGCAAAAGAAATTTCAATT
TTGTTATTTTACAGGTGAATTCTCGAGAGTTTACACCAAAGATGAACTTG
GAAAAGTTTTATCCATCTATCACATTTCTGCATCACTCGTCTATGCTATT
GCACCATCTACTCCAGCCCTTTTCACTGATGTTCAATTTCATATTGGTCC
CATTGAAATTAACCAATACAATTGTGTGGGCTTGGTCTTATCCATTGTAT
TATTGCTGTATGCTATACTGGCATTTATCAATGTCACTGACTTGACTAAA
GAATCTGGCTATCAGATATTTATTAAAAGGTTTAAGCAGGAAAACAGTAC
AACAAAAGGTGATGGACACTCTGGTGAGCGATTATGGTCTTTAATGGACA
CTGTCACCAATATTAACTTGTTATCCATTATCCTTCCAGATGGTTTCCTT
GGGTTTGTATACTCCTTAATGGAAGTCATCATCAATATGGTTGGTCTTTA
TAATTTCTCTTGGTCAATCACTAGAGTGAGCACCTTAACTTGCATTGGTG
CTATCATCTTCAGTACAGTGATGTTCTTATTCCAACAGCGTACTCTCAAA
GGAAGATACATCTTCTATTTCCTTTTCATCTCATGCTTCTCATTAGCAGC
AATGGAATTGAGCTTGCTCAATATTTCAATTCAGATACCAATTAATTCAC
AAGCATTGAAAATGGCTTTGTTTGAGTCCTGTCTTGGATTAAACATCATT
TTTGGCTTCGGTTCGACAGTTTATTCCAAGTGGTTATTATTCTCATTAGT
ACCTGTTAATTCCAAGAGTTACGTGGAATCGCATCGCTATATTGTTGCAA
AAGTATGTTGCTGTACAGGCTTCTTTACAGCTTCTTTCATTTATCAGCAA
AGCTTCGAATGGTTCACCGTCCTCATACTTTGTTGTTTCATCATTGCTTT
CATCTTATTGCTCAGGAAGAATAGATTTCTTCGAAAAATTAAAGACTGAT
CTTTATTCGTTTTACCTACTTTAATGGGATGAAATTTCGCGAGTGTTAAA
TTTCACAGATTTCGCGGATTTGGGGTTGTCATCCGCGAAATTAAGTCGCA
AATGGAAAATTGTAAAGGCCTTATCTGCAGAAATATTTTTAAACAAAACT
AAAAAATGTCAAATAAACTACTTTTCAAATGTTTACTGGCATCAAAGAAG
CGTTAATAATGTGTATTGCAACAACCAACATGCTAGACGATGCTATCGTC
CGTTTAGAGGTCAGTAGTAAACGCGGGAAAGAGTTAGGGCGTAAGGGCGG
TTTACAGGAAAAATAGTGGCGGTAGAGTTTTGGAACAAAACACTGTAAAC
ATCTCCGCCACTGCTTACTCCACCCGAATTTATCACGCCTCTCCTAAAT Coding sequence (CDS) from alignment at sc0000390:264523..266571- >TCONS_00021618 ID=TCONS_00021618|Name=TCONS_00021618|organism=Clytia hemisphaerica|type=CDS|length=2658bp|location=Sequence derived from alignment at sc0000390:264523..266571- (Clytia hemisphaerica)
GTGAATTCTCGAGAGTTTACACCAAAGATGAACTTGGAAAAGTTTTATCC
ATCTATCACATTTCTGCATCACTCGTCTATGCTATTGCACCATCTACTCC
AGCCCTTTTCACTGATGTTCAATTTCATATTGGTCCCATTGAAATTAACC
AATACAATTGTGTGGGCTTGGTCTTATCCATTGTATTATTGCTGTATGCT
ATACTGGCATTTATCAATGTCACTGACTTGACTAAAGAATCTGGCTATCA
GATATTTATTAAAAGGTTTAAGCAGGAAAACAGTACAACAAAAGGTGATG
GACACTCTGGTGAGCGATTATGGTCTTTAATGGACACTGTCACCAATATT
AACTTGTTATCCATTATCCTTCCAGATGGTTTCCTTGGGTTTGTATACTC
CTTAATGGAAGTCATCATCAATATGGTTGGTCTTTATAATTTCTCTTGGT
CAATCACTAGAGTGAGCACCTTAACTTGCATTGGTGCTATCATCTTCAGT
ACAGTGATGTTCTTATTCCAACAGCGTACTCTCAAAGGAAGATACATCTT
CTATTTCCTTTTCATCTCATGCTTCTCATTAGCAGCAATGGAATTGAGCT
TGCTCAATATTTCAATTCAGATACCAATTAATTCACAAGCATTGAAAATG
GCTTTGTTTGAGTCCTGTCTTGGATTAAACATCATTTTTGGCTTCGGTTC
GACAGTTTATTCCAAGTGGTTATTATTCTCATTAGTACCTGTTAATTCCA
AGAGTTACGTGGAATCGCATCGCTATATTGTTGCAAAAGTATGTTGCTGT
ACAGGCTTCTTTACAGCTTCTTTCATTTATCAGCAAAGCTTCGAATGGTT
CACCGTCCTCATACTTTGTTGTTTCATCATTGCTTTCATCTTATTGCTCA
GGAAGAATAGATTTCTTCGAAAAATTAAAGACTGAATGCAGGATAACGAA
GATCAGATTTTACAAGCTTGGTATACGAAACGTAGACGAACAACTGTTAT
TGGTATCTTACAAAAATGTATTTTTGCATTCGAGTATTCTTCAGTTGCAG
TGTCAGCTCTTTATTATTACCAAAATACATTTCAAGTTCAAAATGCTCGT
TTGTTTTATTCCATTACTATGGCTATCATGTATTTCTCTGCAGCATTTTC
TGCCACCTTTGTTGGACGTTACATGGACAAAACAAGAAATCTGAGGCGAA
TTACAATGATGAGTGCTTTGCTTTCAATATCTGGAAATATTATCTATATT
TTACCTTTCTCGAGGTATTTTCCAATATTAGCCCGCGGGCTGTGTGGGAT
GGCTGATGGAATACAGCCTGCAATGTCAGGTGAATTCTCGAGAGTTTACA
CCAAAGATGAACTTGGAAAAGTTTTATCCATCTATCACATTTCTGCATCA
CTCGTCTATGCTATTGCACCATCTACTCCAGCCCTTTTCACTGATGTTCA
ATTTCATATTGGTCCCATTGAAATTAACCAATACAATTGTGTGGGCTTGG
TCTTATCCATTGTATTATTGCTGTATGCTATACTGGCATTTATCAATGTC
ACTGACTTGACTAAAGAATCTGGCTATCAGATATTTATTAAAAGGTTTAA
GCAGGAAAACAGTACAACAAAAGGTGATGGACACTCTGGTGAGCGATTAT
GGTCTTTAATGGACACTGTCACCAATATTAACTTGTTATCCATTATCCTT
CCAGATGGTTTCCTTGGGTTTGTATACTCCTTAATGGAAGTCATCATCAA
TATGGTTGGTCTTTATAATTTCTCTTGGTCAATCACTAGAGTGAGCACCT
TAACTTGCATTGGTGCTATCATCTTCAGTACAGTGATGTTCTTATTCCAA
CAGCGTACTCTCAAAGGAAGATACATCTTCTATTTCCTTTTCATCTCATG
CTTCTCATTAGCAGCAATGGAATTGAGCTTGCTCAATATTTCAATTCAGA
TACCAATTAATTCACAAGCATTGAAAATGGCTTTGTTTGAGTCCTGTCTT
GGATTAAACATCATTTTTGGCTTCGGTTCGACAGTTTATTCCAAGTGGTT
ATTATTCTCATTAGTACCTGTTAATTCCAAGAGTTACGTGGAATCGCATC
GCTATATTGTTGCAAAAGTATGTTGCTGTACAGGCTTCTTTACAGCTTCT
TTCATTTATCAGCAAAGCTTCGAATGGTTCACCGTCCTCATACTTTGTTG
TTTCATCATTGCTTTCATCTTATTGCTCAGGAAGAATAGATTTCTTCGAA
AAATTAAAGACTGAATGCAGGATAACGAAGATCAGATTTTACAAGCTTGG
TATACGAAACGTAGACGAACAACTGTTATTGGTATCTTACAAAAATGTAT
TTTTGCATTCGAGTATTCTTCAGTTGCAGTGTCAGCTCTTTATTATTACC
AAAATACATTTCAAGTTCAAAATGCTCGTTTGTTTTATTCCATTACTATG
GCTATCATGTATTTCTCTGCAGCATTTTCTGCCACCTTTGTTGGACGTTA
CATGGACAAAACAAGAAATCTGAGGCGAATTACAATGATGAGTGCTTTGC
TTTCAATATCTGGAAATATTATCTATATTTTACCTTTCTCGAGGTATTTT
CCAATATTAGCCCGCGGGCTGTGTGGGATGGCTGATGGAATACAGCCTGC
AATGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021618-exon-sc0000390-1575043694:266130..266571 | TCONS_00021618-exon-sc0000390-1575043694:266130..266571 | Clytia hemisphaerica | exon |
| TCONS_00021618-exon-sc0000390-1575043694:264523..265857 | TCONS_00021618-exon-sc0000390-1575043694:264523..265857 | Clytia hemisphaerica | exon |
| TCONS_00021618-exon-sc0000390-1510915933:266130..266571 | TCONS_00021618-exon-sc0000390-1510915933:266130..266571 | Clytia hemisphaerica | exon |
| TCONS_00021618-exon-sc0000390-1510915933:264523..265857 | TCONS_00021618-exon-sc0000390-1510915933:264523..265857 | Clytia hemisphaerica | exon |
| TCONS_00021618-exon-sc0000390-1491911889:266130..266571 | TCONS_00021618-exon-sc0000390-1491911889:266130..266571 | Clytia hemisphaerica | exon |
| TCONS_00021618-exon-sc0000390-1491911889:264523..265857 | TCONS_00021618-exon-sc0000390-1491911889:264523..265857 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000390 | supercontig | sc0000390:264523..266571 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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