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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021590 ID=TCONS_00021590|Name=TCONS_00021590|organism=Clytia hemisphaerica|type=transcript|length=1145bp
TGTCAATGCTTGAATTCTATAAAAGAGATATTCACCTcggcaaaatcaaa
atttaactaCAACAATAATACTGCTTTAAAAGACATTTTAATGATTTCAA
GGAAGATATTCGATTGAGGAGAATGAATAGACCCAGAGATCCCGTGGTAG
AAGGGAACCCTTCTAGGAAGATTTCTCTTTTTCAAGTTATTCCTCGAATG
CTGCGATTACGAAAAGTGAAAAGTGTGACTTTTTCGGTCGTTCACTATGA
CGAACCACGCGGTGATACGCGACAATCAACTGACTCCTTTCTCTCCTCCA
TAACGgaTACAGAAGGCAACAAGAGAGAAGAAAGAAATTGGAGTAACTCT
TTCATTGTTCCTTCACCCCATCTCCTCATTTCTTTTGAtgctatatccgc
cattatgaaagACGCATGTTCCTTGGTAACCAATGGTAACCTCCAATCAT
CAGATGAAGTTAAAAAGATGCTACCACGCATCACGGATTTTACTAAATCA
GCCATTAAGGACATCAATCTGGATCGTTACAGGGTTATTGTCACAACTTA
CATCATTTATGGTCACACATTCCAGGGAAGGTACGCATCAGGTTTCCTAT
GGGACCAAACAATGGACAGGAGCGTTGAGTATAGACATAGTATTCATAAT
GGCACACTTGTATGTGTAGCTTATCTCATTTATATGGAGTGAGTAATTGT
TTATAAAACAGTAGAATTGATACTTGTGTTATCAAGTTTAACCAAATAGG
TGATTGTACTAAACCTTAAGGTTCTGTAGCACACGCttcgtcatcatttt
caaaggaCGATGGCATCTTGGTATAATATCCTTCGTGAAATGGACGGTCC
TACTGGGAGACATTCCTTAGCGACTGTGTTCTGATGTTCATGTCTATGAT
TGTTTTACTGCGTAATTATTGCTTTAGCGCAATCCCCTCGCtatcaaaag
ctcatttaatattcttCCAAAGTGAATAAGTTAGTACGTGACATGCACGG
AGTTATCAGaatcttaaaaaattaaaaaatagtcCTTCGTATGATTTGAA
CCTTGCTCCATTattattggaaaataaaaaatagatcttattttttaacT
ACTGCAGAGTGTTATGTAAATATTAGTTTTATGTCCGATTATAAC Run BLAST on NCBI protein sequence of TCONS_00021590-protein >TCONS_00021590-protein ID=TCONS_00021590-protein|Name=TCONS_00021590-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
MNRPRDPVVEGNPSRKISLFQVIPRMLRLRKVKSVTFSVVHYDEPRGDTR
QSTDSFLSSITDTEGNKREERNWSNSFIVPSPHLLISFDAISAIMKDACS
LVTNGNLQSSDEVKKMLPRITDFTKSAIKDINLDRYRVIVTTYIIYGHTF
QGRYASGFLWDQTMDRSVEYRHSIHNGTLVCVAYLIYME Run BLAST on NCBI transcript from alignment at sc0000390:108012..109521- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021590 ID=TCONS_00021590|Name=TCONS_00021590|organism=Clytia hemisphaerica|type=transcript|length=1510bp|location=Sequence derived from alignment at sc0000390:108012..109521- (Clytia hemisphaerica)
TGTCAATGCTTGAATTCTATAAAAGAGATATTCACCTCGGCAAAATCAAA
ATTTAACTACAACAATAATACTGCTTTAAAAGACATTTTAATGATTTCAA
GGAAGATATTCGATTGAGGAGAATGAATAGACCCAGAGATCCCGTGGTAG
AAGGGAACCCTTCTAGGAAGATTTCTCTTTTTCAAGTTATTCCTCGAATG
CTGCGATTACGAAAAGTGAAAAGTGTGACTTTTTCGGTCGTTCACTATGA
CGAACCACGCGGTGATACGCGACAATCAACTGACTCCTTTCTCTCCTCCA
TAACGGGTAATTTTTTTCTGTGACACTCTTACCAAATCTGTCGGAGCCGT
ATATTTAGCCGTATAAAGTGTATACACGCTTTTTTGTAAGAGTGTGCTGT
TTTTTTTCGATTCATCATTAATATTCTTAACTTTTATGGAAAAGTCATTC
TAAAATATTCTTACAGTAATCTTAGGTTTGGCAATTTAACGCCAATATGC
TCTAAGAATGGTATTCTTTGCTTCAGTTGCAATTTCATGATGGTGGTATT
CTTACCATATTCTTAATTTTTTGACCAAAAAAGCTATAGTGTCCTGTGGC
GGTTCAAACTTTTTGTCAGAAATTAGTACTTAAAGTTTGATGAATGCTGA
TCGTAAGAAATCATTTTTTAGATACAGAAGGCAACAAGAGAGAAGAAAGA
AATTGGAGTAACTCTTTCATTGTTCCTTCACCCCATCTCCTCATTTCTTT
TGATGCTATATCCGCCATTATGAAAGACGCATGTTCCTTGGTAACCAATG
GTAACCTCCAATCATCAGATGAAGTTAAAAAGATGCTACCACGCATCACG
GATTTTACTAAATCAGCCATTAAGGACATCAATCTGGATCGTTACAGGGT
TATTGTCACAACTTACATCATTTATGGTCACACATTCCAGGGAAGGTACG
CATCAGGTTTCCTATGGGACCAAACAATGGACAGGAGCGTTGAGTATAGA
CATAGTATTCATAATGGCACACTTGTATGTGTAGCTTATCTCATTTATAT
GGAGTGAGTAATTGTTTATAAAACAGTAGAATTGATACTTGTGTTATCAA
GTTTAACCAAATAGGTGATTGTACTAAACCTTAAGGTTCTGTAGCACACG
CTTCGTCATCATTTTCAAAGGACGATGGCATCTTGGTATAATATCCTTCG
TGAAATGGACGGTCCTACTGGGAGACATTCCTTAGCGACTGTGTTCTGAT
GTTCATGTCTATGATTGTTTTACTGCGTAATTATTGCTTTAGCGCAATCC
CCTCGCTATCAAAAGCTCATTTAATATTCTTCCAAAGTGAATAAGTTAGT
ACGTGACATGCACGGAGTTATCAGAATCTTAAAAAATTAAAAAATAGTCC
TTCGTATGATTTGAACCTTGCTCCATTATTATTGGAAAATAAAAAATAGA
TCTTATTTTTTAACTACTGCAGAGTGTTATGTAAATATTAGTTTTATGTC
CGATTATAAC Coding sequence (CDS) from alignment at sc0000390:108012..109521- >TCONS_00021590 ID=TCONS_00021590|Name=TCONS_00021590|organism=Clytia hemisphaerica|type=CDS|length=1140bp|location=Sequence derived from alignment at sc0000390:108012..109521- (Clytia hemisphaerica)
ATACAGAAGGCAACAAGAGAGAAGAAAGAAATTGGAGTAACTCTTTCATT
GTTCCTTCACCCCATCTCCTCATTTCTTTTGATGCTATATCCGCCATTAT
GAAAGACGCATGTTCCTTGGTAACCAATGGTAACCTCCAATCATCAGATG
AAGTTAAAAAGATGCTACCACGCATCACGGATTTTACTAAATCAGCCATT
AAGGACATCAATCTGGATCGTTACAGGGTTATTGTCACAACTTACATCAT
TTATGGTCACACATTCCAGGGAAGGTACGCATCAGGTTTCCTATGGGACC
AAACAATGGACAGGAGCGTTGAGTATAGACATAGTATTCATAATGGCACA
CTTGTATGTGTAGCTTATCTCATTTATATGGAGTGAATGAATAGACCCAG
AGATCCCGTGGTAGAAGGGAACCCTTCTAGGAAGATTTCTCTTTTTCAAG
TTATTCCTCGAATGCTGCGATTACGAAAAGTGAAAAGTGTGACTTTTTCG
GTCGTTCACTATGACGAACCACGCGGTGATACGCGACAATCAACTGACTC
CTTTCTCTCCTCCATAACGGATACAGAAGGCAACAAGAGAGAAGAAAGAA
ATTGGAGTAACTCTTTCATTGTTCCTTCACCCCATCTCCTCATTTCTTTT
GATGCTATATCCGCCATTATGAAAGACGCATGTTCCTTGGTAACCAATGG
TAACCTCCAATCATCAGATGAAGTTAAAAAGATGCTACCACGCATCACGG
ATTTTACTAAATCAGCCATTAAGGACATCAATCTGGATCGTTACAGGGTT
ATTGTCACAACTTACATCATTTATGGTCACACATTCCAGGGAAGGTACGC
ATCAGGTTTCCTATGGGACCAAACAATGGACAGGAGCGTTGAGTATAGAC
ATAGTATTCATAATGGCACACTTGTATGTGTAGCTTATCTCATTTATATG
GAGTGAATGAATAGACCCAGAGATCCCGTGGTAGAAGGGAACCCTTCTAG
GAAGATTTCTCTTTTTCAAGTTATTCCTCGAATGCTGCGATTACGAAAAG
TGAAAAGTGTGACTTTTTCGGTCGTTCACTATGACGAACCACGCGGTGAT
ACGCGACAATCAACTGACTCCTTTCTCTCCTCCATAACGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021590-exon-sc0000390-1575043694:109216..109521 | TCONS_00021590-exon-sc0000390-1575043694:109216..109521 | Clytia hemisphaerica | exon |
| TCONS_00021590-exon-sc0000390-1575043694:108012..108850 | TCONS_00021590-exon-sc0000390-1575043694:108012..108850 | Clytia hemisphaerica | exon |
| TCONS_00021590-exon-sc0000390-1510915933:109216..109521 | TCONS_00021590-exon-sc0000390-1510915933:109216..109521 | Clytia hemisphaerica | exon |
| TCONS_00021590-exon-sc0000390-1510915933:108012..108850 | TCONS_00021590-exon-sc0000390-1510915933:108012..108850 | Clytia hemisphaerica | exon |
| TCONS_00021590-exon-sc0000390-1491911889:109216..109521 | TCONS_00021590-exon-sc0000390-1491911889:109216..109521 | Clytia hemisphaerica | exon |
| TCONS_00021590-exon-sc0000390-1491911889:108012..108850 | TCONS_00021590-exon-sc0000390-1491911889:108012..108850 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000390 | supercontig | sc0000390:108012..109521 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005334 | Tctex |
Blast
The following BLAST results are available for this feature:
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