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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021585 ID=TCONS_00021585|Name=TCONS_00021585|organism=Clytia hemisphaerica|type=transcript|length=7075bpRun BLAST on NCBI protein sequence of TCONS_00021585-protein >TCONS_00021585-protein ID=TCONS_00021585-protein|Name=TCONS_00021585-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1832bp MVKCFYHIVFIIFVLSNGVFCQDNSVASALRRTPERPSIFENPEEVVFASRun BLAST on NCBI transcript from alignment at sc0000390:50835..68299- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021585 ID=TCONS_00021585|Name=TCONS_00021585|organism=Clytia hemisphaerica|type=transcript|length=17465bp|location=Sequence derived from alignment at sc0000390:50835..68299- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000390:50835..68299- >TCONS_00021585 ID=TCONS_00021585|Name=TCONS_00021585|organism=Clytia hemisphaerica|type=CDS|length=109980bp|location=Sequence derived from alignment at sc0000390:50835..68299- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00021585 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 257.299 bits (656), Expect = 3.800e-68 Identity = 171/517 (33.08%), Postives = 250/517 (48.36%), Query Frame = 1
Query: 901 GQYTPWSEWSECSLTCGEGTQWRYRTCTNPPPRNGGKDCIGDALEEQKCNLRDCDVNGKFGEWGEWNACSRKCDGGRQFRFRQCDSPPPSGNGKQCDADGEKSFDVQICNTYKCRVPKRIDSAIGTLYGQVNGLNLLDSGVMAKIHTSATGRVSLT-VNFTNVPQ----FTQGLSCLLTPIYLAVVN----GLEGLINSNGEFEHFSRMTFESGEVLQSSTSVITEADKAVLYLTINIQG---RLPFGNEMFMLDAFKESIVQSGYEQLLGVSMPTIIINKKPVRYSVEHVTKYNTREILVPPHRRFKVDMLQVA-----YDDIEEATNFE--ATVDSKN-SEECPKGFYRN--GIFCQDRDEC-MNSPCTQICTNTYGSYVCSCTSGYELSQDRHTCLDVNECVKGTHTCGAEEVCINNKGGFDCAVDDCEQGYRFDNITGRCSDEDECEAGSHDCNEDENCRNIVGSYVCELRPCQNGYQRNEQTQKCEDINECLHSPCPFDEVCQNRDGFFECM 2382
G ++PWS W CS TC G RYRTC NPPP NGG+ C G + Q+CN C V+G +G W W+ CS C GG + R R CD P P G+ C D + V CN C P A G++ G +N + + + A I S + TNVP+ + + +L PIY + G +N F+ +++ F +GE+LQ S L L I + G +L E+ + D + E +Q+G QL S I+ + Y+ H Y+ + +P F V+ L + Y+ IEE F+ A++ + S +CP GF + G FC D DEC +PC+ C N G+Y CSC G ++ D TC D++EC G HTC A + C N G + C V C G+R + C D +EC+ S C+ + C N +GS+ C C+ GYQ + +KC D+NEC + C D+ C+N G ++C+
Sbjct: 4758 GNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGD---TTQVTRCNVQAC--PGGPQRARGSVIGNINDVEFGIAFLNATITDSPNSDTRIIRAKITNVPRSLGSAMRKIVSILNPIYWTTAKEIGEAVNGFTLTNAVFKRETQVEFATGEILQMSHIARGLDSDGSLLLDIVVSGYVLQLQSPAEVTVKD-YTEDYIQTGPGQLYAYSTRLFTIDGISIPYTWNHTVFYDQAQGRMP----FLVETLHASSVESDYNQIEETLGFKIHASISKGDRSNQCPSGFTLDSVGPFCADEDECAAGNPCSHSCHNAMGTYYCSCPKGLTIAADGRTCQDIDECALGRHTCHAGQDCDNTIGSYRCVV-RCGSGFRRTSDGLSCQDINECQESS-PCH--QRCFNAIGSFHCG---CEPGYQL--KGRKCMDVNECRQNVCRPDQHCKNTRGGYKCI 5255 HSP 2 Score: 144.821 bits (364), Expect = 5.379e-34 Identity = 77/208 (37.02%), Postives = 113/208 (54.33%), Query Frame = 1
Query: 640 PSIFENPEEVVFASTGDSLILSCVAKGIPLPSITWT-----VPYDITPHKVLSNGSLHIQEVGFSHSGQFSCEAKNSVGSDIKFFDISVRIDGQYTPWSEWSECSLTCGEGTQWRYRTCTNPPPRNGGKDCIGDALEEQKCNLRDCDVNGKFGEWGEWNACSRKCDGGRQFRFRQCDSPPPSGNGKQCDADGEKSFDVQICNTYKCRV 1248
P I P E V + G +IL+C A G P P+ITW+ + +D + VLSN SL+I + + +F C A+N +GS + + V++ G ++ WS W CS+TCG+G Q R R C P P NGGK C G LE + C + C V+G + EW W C+R C G Q R R C++P G+ C+ + + ++ +CN C V
Sbjct: 4440 PIITLEPVETVI-NAGGKIILNCQATGEPQPTITWSRQGHSISWDDRVN-VLSNNSLYIADAQKEDTSEFECVARNLMGSVLVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGN---AVEIIMCNIRPCPV 4642 HSP 3 Score: 126.716 bits (317), Expect = 1.570e-28 Identity = 72/189 (38.10%), Postives = 103/189 (54.50%), Query Frame = 1
Query: 4648 CPEGWKLDPEGY-CIDVDECKEN-PCHQMCINTDGGYRCTCRIGYVLQLDNTTCLDIDECALSMRFEGGNLCPQEDMECLNTEGSFKCMMPCEKGFKRNIQGQCEDVNECVTGDHNCGEFLLCLNVEGGFRCQCPRGFRKSMPDRICIDVDECTEVGVRVCQQRCQNTMGAYKCSCNQGFYLAYDQVNC 5208
C G++ +G C D++EC+E+ PCHQ C N G + C C GY QL C+D++EC N+C + D C NT G +KC+ C G + G C D++EC G H C +C N G +RC CPRG+R R C+D++EC +V + C +C NT G++KC C G +L D +C
Sbjct: 5177 CGSGFRRTSDGLSCQDINECQESSPCHQRCFNAIGSFHCGCEPGY--QLKGRKCMDVNECR-------QNVC-RPDQHCKNTRGGYKCIDLCPNGMTKAENGTCIDIDECKDGTHQCRYNQICENTRGSYRCVCPRGYRSQGVGRPCMDINECEQVP-KPCAHQCSNTPGSFKCICPPGQHLLGDGKSC 5354 HSP 4 Score: 119.398 bits (298), Expect = 2.290e-26 Identity = 70/175 (40.00%), Postives = 95/175 (54.29%), Query Frame = 1
Query: 1870 ECPKGFYR--NGIFCQDRDECM-NSPCTQICTNTYGSYVCSCTSGYELSQDRHTCLDVNECVKGTHTCGAEEVCINNKGGFDCAVDDCEQGY-RFDNITGRCSDEDECEAGSHDCNEDENCRNIVGSYVCELRPCQNGYQRNEQTQKCEDINECLHSPCPFDEVCQNRDGFFECM 2382
C GF R +G+ CQD +EC +SPC Q C N GS+ C C GY+L + C+DVNEC + + C ++ C N +GG+ C +D C G + +N G C D DEC+ G+H C ++ C N GSY C C GY+ + C DINEC P P C N G F+C+
Sbjct: 5176 RCGSGFRRTSDGLSCQDINECQESSPCHQRCFNAIGSFHCGCEPGYQLKGRK--CMDVNECRQ--NVCRPDQHCKNTRGGYKC-IDLCPNGMTKAEN--GTCIDIDECKDGTHQCRYNQICENTRGSYRCV---CPRGYRSQGVGRPCMDINECEQVPKPCAHQCSNTPGSFKCI 5340 HSP 5 Score: 111.309 bits (277), Expect = 6.531e-24 Identity = 48/118 (40.68%), Postives = 68/118 (57.63%), Query Frame = 1
Query: 895 IDGQYTPWSEWSECSLTCGEGTQWRYRTCTNPPPRNGGKDCIGDALEEQKCNLRDCDVNGKFGEWGEWNACSRKCDGGRQFRFRQCDSPPPSGNGKQCDADGEKSFDVQICNTYKCRV 1248
I G++ W+ WS CS++CG G + R R C++P P+ GG+ C G ++ CN C +G + W W CSR C+GG+ R+R CD+PPPS G+ C G +Q CNT C V
Sbjct: 4699 IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRAC---GGPDSQIQRCNTDMCPV 4813 HSP 6 Score: 109.768 bits (273), Expect = 1.863e-23 Identity = 75/180 (41.67%), Postives = 97/180 (53.89%), Query Frame = 1
Query: 4639 SNICPEGWKLDPEG-YCIDVDECKE-NPCHQMCINTDGGYRCTCRIGYVLQLDNTTCLDIDECALSMRFEGGNLCPQEDMECLNTEGSFKCMMPCEKGFKRNIQG-QCEDVNECVTGDHNCGEFLLCLNVEGGFRCQCPRGFRKSMPDRICIDVDECTEVGVRVCQ--QRCQNTMGAYKC 5163
SN CP G+ LD G +C D DEC NPC C N G Y C+C G + D TC DIDECAL G + C +C NT GS++C++ C GF+R G C+D+NEC C + C N G F C C G++ + R C+DV+EC + VC+ Q C+NT G YKC
Sbjct: 5089 SNQCPSGFTLDSVGPFCADEDECAAGNPCSHSCHNAMGTYYCSCPKGLTIAADGRTCQDIDECAL-----GRHTC-HAGQDCDNTIGSYRCVVRCGSGFRRTSDGLSCQDINECQESSP-CHQ--RCFNAIGSFHCGCEPGYQ--LKGRKCMDVNECRQ---NVCRPDQHCKNTRGGYKC 5254 HSP 7 Score: 106.301 bits (264), Expect = 2.139e-22 Identity = 51/133 (38.35%), Postives = 72/133 (54.14%), Query Frame = 1
Query: 859 GSDIKFFDISVR---IDGQYTPWSEWSECSLTCGEGTQWRYRTCTNPPPRNGGKDCIGDALEEQKCNLRDCDVNGKFGEWGEWNACSRKCDGGRQFRFRQCDSPPPSGNGKQCDADGEKSFDVQ--ICNTYKC 1242
G+ ++ ++R + G ++ W W CS +CG+GTQ R R C NPPP GG C G + Q CN R+C ++GK+ W W+ACS C GG + R R C P P G++C+ DVQ CN+ C
Sbjct: 4627 GNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGS-----DVQSDFCNSDPC 4754 The following BLAST results are available for this feature:
BLAST of TCONS_00021585 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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