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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021578 ID=TCONS_00021578|Name=TCONS_00021578|organism=Clytia hemisphaerica|type=transcript|length=2534bpRun BLAST on NCBI transcript from alignment at sc0000390:278027..289212+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021578 ID=TCONS_00021578|Name=TCONS_00021578|organism=Clytia hemisphaerica|type=transcript|length=11186bp|location=Sequence derived from alignment at sc0000390:278027..289212+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00021578 vs. Swiss-Prot (Human)
Match: LOX5 (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2) HSP 1 Score: 245.743 bits (626), Expect = 1.069e-69 Identity = 187/683 (27.38%), Postives = 323/683 (47.29%), Query Frame = 1
Query: 136 YRIKVTTGKAKGSGTNATIKIKLIDHEGKHSEQHVLDKWLHNDFEYGRIDSYTILTDKDFGRVESIVLNRDDCGMNDSWFVEHVAVEHDTEADVHFPLSRWLPPYKAMQFNKFDSQLPQMVKKNSPELYKQ-REAELEQKKKEFAYQPIGDIKGMPRTV-----KTLPPEEAFSRDYFAEVGFTGLTGKISDSLKKMRYE-------DEFSSFNDIYKVYGGPLSPFRIPDGHAAWRTDEKFAQLRLTGPNCTVIRGVLKDGGLPENFAVDTSLLETHFLQGQTFEQAYKNDRLFYIDYKDLDGYIAK----ASKERMVAPIALFYARMDGILIPLAIQLFQIASKTNPVFYPPPIDEERVWLHAKFWFGVADSNFHEPVTHLMGTHLVAGDFVTCFHNTISPSHPVYKLMLPHFIFLLNINTDGMPVLTAENGAFNNILVFGLENCYDLMLKKYQSFSLKDQGWLENDIENRGV---KNLPNYHYYEDAKPMFEAIHNYIQQCIKTIYDEDKNVEEDFELQNFAQLLCNPKEGMKGVLGNG---QFTTMEDLTKTLSTLVFILTNVHAAANFNQYDEYAYPPNFPFRLKGSPPTNKDSISEEDLVKLFDVNITLDTMELGRTLSLQGSNK----IGNYETNYEFKPEILEHYLGFINALAKIQTDNDEKNLRRRNPYPWLSP 2103
Y + V TG +GT+ I + L+ G SE+H+LDK +NDFE G +DSY + D++ G ++ + + + +ND W+++++ ++ + FP RW+ + ++L + + + KQ R ELE ++K++ + G P ++ K LP + F D V F K ++L R+ ++F+ F I+ +S R+ + W+ D F L G N +IR + LPE V T ++E + + EQ + +F +D++ LDG A + + + API L Y + ++P+AIQL QI NP+F P D + WL AK W +D + H+ +THL+ THLV+ F + + HP++KL++ H F + INT L E G F+ G ++ + + + + E I+ RG+ +++P Y Y +D ++EAI + + + Y+ D+ VEED ELQ+F + GM+G +G + E L++ L+ ++F + HAA NF QYD ++ PN P ++ PPT K ++ E +V + LG +L + +G Y + + + E F L I + E+N +++ PY +LSP
Sbjct: 4 YTVTVATGSQWFAGTDDYIYLSLVGSAG-CSEKHLLDKPFYNDFERGAVDSYDVTVDEELGEIQLVRIEKRKYWLNDDWYLKYITLKTPHGDYIEFPCYRWITGDVEVVLRDGRAKL---ARDDQIHILKQHRRKELETRQKQYRWMEWN--PGFPLSIDAKCHKDLPRDIQF--DSEKGVDFVLNYSKAMENLFINRFMHMFQSSWNDFADFEKIFVKISNTISE-RVMNH---WQEDLMFGYQFLNGCNPVLIRRCTE---LPEKLPVTTEMVECSLERQLSLEQEVQQGNIFIVDFELLDGIDANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIPGDENPIFLPS--DAKYDWLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGGGGHVQMVQRAMKDLTYASLCFPEA-IKARGMESKEDIPYYFYRDDGLLVWEAIRTFTAEVVDIYYEGDQVVEEDPELQDFVNDVY--VYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMRAPPPTAKGVVTIEQIVDTLP-DRGRSCWHLGAVWALSQFQENELFLGMYPEEHFIEKPVKEAMARFRKNLEAIVSVIAERNKKKQLPYYYLSP 665 The following BLAST results are available for this feature:
BLAST of TCONS_00021578 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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