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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021577 ID=TCONS_00021577|Name=TCONS_00021577|organism=Clytia hemisphaerica|type=transcript|length=1512bp
CATTCCTTGAAATTTTGGATGATAATAAAATAACTTGTTTTCATAACATT
ACATTCTCAAACTTTATATTTATTAAATCCTGAGCAACATTAACAACACT
TTTAAAAAACAGAAAAGAGATGGCAGTGGCAGTGGCACTTGTTAGCCTGT
TAACAAGATTCCAAAATTGTACTGTCATACAAGATTCGGATAGATGTTCT
ATACCGTTTGGTTTTCACGTACCTTTTAAAGATGAGTTTACACCTGCTTG
TTTACATCACGATGCATGTTATGGATGTGGTGGTTCTTACGGTTGGACCC
AAACACAGTGTGATACTGCTTTCCGAAAACTCATGCATTCTTTTTGCATC
AAAGACCTAAAAGAATCGAGACGAGGGAGACGGAACAAacgtttcatatc
aaattttcttCGTCAATGGAAGAAGATGGTGGAGTTAAAGAAAAACATCT
TGGAAGGCTGGAGACGAGCCACTAATAAAATAACATCATCGGGCGAGATC
AAACGAGTGCAAAGAGCGCTTCGTGAAATGATGTCACTCATATCCAAATG
GTTTTTCGCTTCAAACCGTCTCGATGAATGTAAAAAATCGGCTgatattt
ttcacaaagttgtaGAGACATTTGGTGTATACAGTTTTCGCTACACCAAC
AAAACACACTGTGCAGAGAGGTGCGTTAAAAAACTCATCGAACNcccccc
cgtttattaaaatctcgaaagttttccaaccccctccccAGGTTATTTGG
AAGCTAAGAGTATATACTTTGGAACTTGCCCGTAATCGAAGAGTTGACCA
ACGTAGGAAAAATGCACCATCATCAGAATTCTCAGGGTGAAAATTTTCAG
ACgtctaaaaatcaaaagtgatgTTTATGAATATGTTGACAAAAAAACCA
AaggaatttttcttttataaactttgaaaattgttaTGTGACTTTTGTAA
AAAGATCCCTATTGAAGTAATCAAGCTGAGAAGCAAACTCATTCCTCTAT
TTAAAAGACTCCTTGTCTCAAGTGACCCTACATGAATATGTCAGTCAGGA
TATGATGCTAGATACAAGTGGAAATATGGGGAAATATATCAAAACACCAC
CAAATTATTGTCCTCATTGAAAAATTTCTCGCCGAGTGATCGAGACAGGG
GACTTTAAATGGGATTTTGAAATTCTGTTGTTTTCATCTAAAAATACACC
GGGATCTTTAAAACCATATTTATACCCAATATCTACAATTATTTTTCCCA
GGGGAAGAATGTAGAAGATTAAAAGgtattgttttcaaataagaatGAAT
TGATaagtttgcttactcatcaattttaactctcatgctttttcacattg
aatattttatcagcataatataacaataggaagacactgtcctaatatga
aatatgtgcctaatatgaaacgggagcactcatgtaaaaataaaaccttc
ttAAGGCGTAGTGTTTTGGCATAGcgtttggttttattttttaggcTGAT
TTCATGACCGNG Run BLAST on NCBI protein sequence of TCONS_00021577-protein >TCONS_00021577-protein ID=TCONS_00021577-protein|Name=TCONS_00021577-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
MAVAVALVSLLTRFQNCTVIQDSDRCSIPFGFHVPFKDEFTPACLHHDAC
YGCGGSYGWTQTQCDTAFRKLMHSFCIKDLKESRRGRRNKRFISNFLRQW
KKMVELKKNILEGWRRATNKITSSGEIKRVQRALREMMSLISKWFFASNR
LDECKKSADIFHKVVETFGVYSFRYTNKTHCAERCVKKLIEXPPVY Run BLAST on NCBI transcript from alignment at sc0000390:110035..113285+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021577 ID=TCONS_00021577|Name=TCONS_00021577|organism=Clytia hemisphaerica|type=transcript|length=3251bp|location=Sequence derived from alignment at sc0000390:110035..113285+ (Clytia hemisphaerica)
CATTCCTTGAAATTTTGGATGATAATAAAATAACTTGTTTTCATAACATT
ACATTCTCAAACTTTATATTTATTAAATCCTGAGCAACATTAACAACACT
TTTAAAAAACAGAAAAGAGATGGCAGTGGCAGTGGCACTTGTTAGCCTGT
TAACAAGATTCCAAAATTGTACTGTCATACAAGATTCGGATAGATGTTCT
ATACCGTTTGGTTTTCACGTACCTTTTAAAGATGAGTTTACACCTGCTTG
TTTACATCACGATGCATGTTATGGATGTGTGAGTAGAGTCTTCTTTTTGT
TACCTGATTGGggaaaaatgtttgtttgtttgcttgGTCTCCCATCATTT
GTTGATTTGAAATTTCGGTGGGaagaaagtgacgaattttccCCAGTTCT
AAGGACAACGGAACGACTGAAGCaacatggcccccggcgtgcgcatcgaa
ttgagggggccaaaaaataTGTCgtccaccatggttgggcgacgaaagaa
attttcgactttttgcccttatttcacccctctaaacggtatatataaga
tttttcaaagtaaaaaaaaaatactttgcaaaatattgggggggccatgg
cccccctggcccccccGGTGACGGGGGCCATGAGCAATTTTAGAGTAACG
CGCAGTTTTGATCTCAAAGGCGGGGCACTACCCTTGTCAACCGACAGGGA
TGTACCGCTGGAGTTCGAAAAATAGACCCTACGTCGGACtcgtttttttt
tggaaaaagtgaccctgaatgtgACTGAAATTccgatttcaaaacatttt
ctatattttttgcaaatttcccgaaaaaggtaccctacgagaggctaatt
tttttctatttttgtgttGTTGAGAAAAAAGGTACCCGACCAGCGGCACA
CCTCAGCACCCCTTTTTAACATCCCCCGGGTTTTGACGGTATTATGCTGA
TTCTGTTgtccttaagggctctgaccatagtgaatttttcataattgccc
tgtttaaaatgtgttttctgactgatgtaaccaacaaaactatagcatgt
tatacattttctattagacaaactattccgtaatctgaaaattcaaaaat
tgcattgaaaaagtttgatgaagaagaaaatgaagacttttgcgaggaag
agtatttcaactttgaagagcttagtttcggcNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNggcaattctttgttaaaagtgt
taaagaatctaaaacataacttttatgtttcagatactaaaatcaatttt
ctgactatggtcagagcccttaaatcaaGTTGTAAAAACTAACCGTCTAC
GTCGCCGGAAAAGCGCCATACATAATAAATTCGCCTTTATACCTCATTCG
AGCACAGATTAGTAAATAGAAAGTGTTAGTTTGCAGCACTTACTCCACTG
TACTCTTTGACTTTTAGGGTGGTTCTTACGGTTGGACCCAAACACAGTGT
GATACTGCTTTCCGAAAACTCATGCATTCTTTTTGCATCAAAGACCTAAA
AGAATCGAGACGAGGGAGACGGAACAAacgtttcatatcaaattttcttC
GTCAATGGAAGAAGATGGTGGAGTTAAAGAAAAACATCTTGGAAGGCTGG
AGACGAGCCACTAATAAAATAACATCATCGGGCGAGATCAAACGAGTGCA
AAGAGCGCTTCGTGAAATGATGTCACTCATATCCAAATGGTTTTTCGCTT
CAAACCGTCTCGATGAATGTAAAAAATCGGCTgatatttttcacaaagtt
gtaGAGACATTTGGTGTATACAGTTTTCGCTACACCAACAAAACACACTG
TGCAGAGAGGTGCGTTAAAAAACTCATCGAACNcccccccgtttattaaa
atctcgaaagttttccaaccccctccccAGGTTATTTGGAAGCTAAGAGT
ATATACTTTGGAACTTGCCCGTAATCGAAGAGTTGACCAACGTAGGAAAA
ATGCACCATCATCAGAATTCTCAGGGTGAAAATTTTCAGACgtctaaaaa
tcaaaagtgatgTTTATGAATATGTTGACAAAAAAACCAAaggaattttt
cttttataaactttgaaaattgttaTGTGACTTTTGTAAAAAGATCCCTA
TTGAAGTAATCAAGCTGAGAAGCAAACTCATTCCTCTATTTAAAAGACTC
CTTGTCTCAAGTGACCCTACATGAATATGTCAGTCAGGATATGATGCTAG
ATACAAGTGGAAATATGGGGAAATATATCAAAACACCACCAAATTATTGT
CCTCATTGAAAAATTTCTCGCCGAGTGATCGAGACAGGGGACTTTAAATG
GGATTTTGAAATTCTGTTGTTTTCATCTAAAAATACACCGGGATCTTTAA
AACCATATTTATACCCAATATCTACAATTATTTTTCCCAGGGGAAGAATG
TAGAAGATTAAAAGgtattgttttcaaataagaatGAATTGATaagtttg
cttactcatcaattttaactctcatgctttttcacattgaatattttatc
agcataatataacaataggaagacactgtcctaatatgaaatatgtgcct
aatatgaaacgggagcactcatgtaaaaataaaaccttcttAAGGCGTAG
TGTTTTGGCATAGcgtttggttttattttttaggcTGATTTCATGACCGN
G Coding sequence (CDS) from alignment at sc0000390:110035..113285+ >TCONS_00021577 ID=TCONS_00021577|Name=TCONS_00021577|organism=Clytia hemisphaerica|type=CDS|length=1182bp|location=Sequence derived from alignment at sc0000390:110035..113285+ (Clytia hemisphaerica)
ATGGCAGTGGCAGTGGCACTTGTTAGCCTGTTAACAAGATTCCAAAATTG
TACTGTCATACAAGATTCGGATAGATGTTCTATACCGTTTGGTTTTCACG
TACCTTTTAAAGATGAGTTTACACCTGCTTGTTTACATCACGATGCATGT
TATGGATGTGGTGGTTCTTACGGTTGGACCCAAACACAGTGTGATACTGC
TTTCCGAAAACTCATGCATTCTTTTTGCATCAAAGACCTAAAAGAATCGA
GACGAGGGAGACGGAACAAacgtttcatatcaaattttcttCGTCAATGG
AAGAAGATGGTGGAGTTAAAGAAAAACATCTTGGAAGGCTGGAGACGAGC
CACTAATAAAATAACATCATCGGGCGAGATCAAACGAGTGCAAAGAGCGC
TTCGTGAAATGATGTCACTCATATCCAAATGGTTTTTCGCTTCAAACCGT
CTCGATGAATGTAAAAAATCGGCTgatatttttcacaaagttgtaGAGAC
ATTTGGTGTATACAGTTTTCGCTACACCAACAAAACACACTGTGCAGAGA
GGTGCGTTAAAAAACTCATCGAACNcccccccgtttattaaATGGCAGTG
GCAGTGGCACTTGTTAGCCTGTTAACAAGATTCCAAAATTGTACTGTCAT
ACAAGATTCGGATAGATGTTCTATACCGTTTGGTTTTCACGTACCTTTTA
AAGATGAGTTTACACCTGCTTGTTTACATCACGATGCATGTTATGGATGT
GGTGGTTCTTACGGTTGGACCCAAACACAGTGTGATACTGCTTTCCGAAA
ACTCATGCATTCTTTTTGCATCAAAGACCTAAAAGAATCGAGACGAGGGA
GACGGAACAAacgtttcatatcaaattttcttCGTCAATGGAAGAAGATG
GTGGAGTTAAAGAAAAACATCTTGGAAGGCTGGAGACGAGCCACTAATAA
AATAACATCATCGGGCGAGATCAAACGAGTGCAAAGAGCGCTTCGTGAAA
TGATGTCACTCATATCCAAATGGTTTTTCGCTTCAAACCGTCTCGATGAA
TGTAAAAAATCGGCTgatatttttcacaaagttgtaGAGACATTTGGTGT
ATACAGTTTTCGCTACACCAACAAAACACACTGTGCAGAGAGGTGCGTTA
AAAAACTCATCGAACNcccccccgtttattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021577-exon-sc0000390-1491911889:110035..110312 | TCONS_00021577-exon-sc0000390-1491911889:110035..110312 | Clytia hemisphaerica | exon |
| TCONS_00021577-exon-sc0000390-1510915933:110035..110312 | TCONS_00021577-exon-sc0000390-1510915933:110035..110312 | Clytia hemisphaerica | exon |
| TCONS_00021577-exon-sc0000390-1575043694:110035..110312 | TCONS_00021577-exon-sc0000390-1575043694:110035..110312 | Clytia hemisphaerica | exon |
| TCONS_00021577-exon-sc0000390-1491911889:112052..113285 | TCONS_00021577-exon-sc0000390-1491911889:112052..113285 | Clytia hemisphaerica | exon |
| TCONS_00021577-exon-sc0000390-1510915933:112052..113285 | TCONS_00021577-exon-sc0000390-1510915933:112052..113285 | Clytia hemisphaerica | exon |
| TCONS_00021577-exon-sc0000390-1575043694:112052..113285 | TCONS_00021577-exon-sc0000390-1575043694:112052..113285 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000390 | supercontig | sc0000390:110035..113285 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR016090 | PLipase_A2_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004623 | phospholipase A2 activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0050482 | arachidonic acid secretion |
| GO:0006644 | phospholipid metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0050482 |
arachidonic acid secretion |
| biological_process |
GO:0006644 |
phospholipid metabolic process |
| molecular_function |
GO:0004623 |
phospholipase A2 activity |
Blast
The following BLAST results are available for this feature:
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