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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021573 ID=TCONS_00021573|Name=TCONS_00021573|organism=Clytia hemisphaerica|type=transcript|length=2026bp
GAAGGATAAGAGGGAGCAAGAACGGAAGGATACGAGGGAACGAGAACGGA
AGGATAAGAGGGAACGAGAACGGAAGGATAAGAAGGAACGAGAACGGAAG
GATAAGAGGGAGCAAGAACGGAAGGATACGAGGGAACGAGAACGGAAGGA
TACGAGGGAACGAGAACAGAAGGATAAGAGGAAAACGAGAACGGAAGGAT
GGGAGGGAATGATAGGAGGAAACGAGAGCGGAAGGATAAGAGGGAACGAG
AACGGAAGGATACGAGGGAACGAGAACGGAAGGATACGAGGGAACGAGAA
CGGAAGGATACAAGGGAACGAGAACGGAAGGATAAGAGGGAACGAGAACG
GAAGGATAAGAAGGAACGAGAACGGAAGGATAAGAGGGAGCAAGAACGGA
AGGATACGAGGGAACGAGAACGGAAGGATACGAGGGAACGAGAACAGAAG
GATAAGAGGAAAACGAGAACGGAAGGATGGGAAGGAATGATAGGAGGAAA
CGAGAACGGAAGGATAGGAGGGAGCAAGAACGGAAGGATACGAGGGAACG
AGAACGGAAGGATAAGAGGGAACGAGAACGGAAGGATACGAGGGAACGAG
AACGGAAGGATAAGAGGGAACGAGAACAGAAGGATAAGAGGAAAACGAGA
ACGGAAGGATGGGAGGGAATGATAGGAGGAAACGAGAACGGAAGGATAGA
AGGGAGCAAGAACGGAAGGATAAGAGGGAACGAGAACGGAAGGATGAGAG
GGAGCAATAACGGAAGGATACGAGGGAACGAGAACGGAAGGATAAGAGGG
AACGAGAACGGATGGATAAGAAGGAACGAGAACGAAGGATAAGAGGGAGC
AAGAACGGAAGGATACGAGGGAACGAGAACGGAAGGATAAGAGGGAACGA
GAACGGAAGGATAAGAAGGAACGAGAACGGAAGGATAAGAGGGAGCAAGA
ACGGAAGGATACGAGGGAACGAGAACGGAAGGATACGAGGGAACGAGAAC
AGAAGGATAAGAGGAAAACGAGAACGGAAGGATGGGAAGGAATGATAGGA
GGAAATGAGAACAGAAGGATAGGAGGGAGCAAGAACGGAAGGATAAGAGG
GAACGAGAACGGAAGGATACGAGGGAACGAGAACGGAAGGATAAGAGGGA
AGGAGAACGGAAGGATACGAGGGAACGAGAACGGAAGGATAAGAGGGAAC
GAGAACAGAAGGATAAGAGGAAAACGAGAACGGAAGGATGGGAGGGAATG
ATAGGAGGAAACGAGAACGGAAGGATAGGAGGGAGCAAGAACGGAAGGAT
AAGAGGGAACGAGAACAGAAGGATAAGAGGGAACGAGAACGGAAGGATAC
GAGGGAACGAGAACGGAAGGATAAGAGGGAGCGAGAACGGAAGGATAAGA
GGGAGCAAGAACGGAAGGATAAGAGAGAACGAGAACGGAATGATACAAGG
GAACGAGAACGGAAGGATAAGAGGGAACGAGAACGGAAGGAAAAGAGGGA
ACGAAAACGGAAGGATAAGAGGGAACAAGAACGGAAGGAGGGAACGAGAA
CGGAAGGATAAGAGGGAGCGAGAACGGAAGGATAAGAGGGAACGAGAACA
GAAGGATAAGAGGGAGAAAGAACGGAAGGATAAGAGGGAACGAGAACGGA
AGGATAGGGGAAATGAGAACGgaaggatgagaaggaacgagaACGGAAGG
ATAAGGGGGAAACGAGAACGGAATGATAAAGAGGGAGCAAGAACGGAAGG
ATAAGAGTTAACGAGAACGGAAGGATAGGGGAAACGAGAACAGAAGCATA
GGAGGGAACGAGAACGGATTGAGAGGGAAGAAAAGAATGCTTGCAAAAAG
GTCAGTGTCGGGTGAATAAGAAAAGTCTTTAAATCGACTGTTTCATACtt
aaaaccaacttttcaacgcgaccaaaaaataaataaaaaagaattaaaga
GTTTGTTTCTGAAAGATTTCCAAGCTTTTTCTActgaataaaaagttttg
atgCGTGGAAGGTGAACAAcacgaaa Run BLAST on NCBI protein sequence of TCONS_00021573-protein >TCONS_00021573-protein ID=TCONS_00021573-protein|Name=TCONS_00021573-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MIGGNENGRIGGSKNGRIRGNENRRIRGNENGRIRGNENGRIRGSENGRI
RGSKNGRIRENENGMIQGNENGRIRGNENGRKRGNENGRIRGNKNGRRER
ERKDKRERERKDKREREQKDKREKERKDKRERERKDRGNENGRMRRNENG
RIRGKRERNDKEGARTEG Run BLAST on NCBI transcript from alignment at sc0000389:268934..270959 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021573 ID=TCONS_00021573|Name=TCONS_00021573|organism=Clytia hemisphaerica|type=transcript|length=2026bp|location=Sequence derived from alignment at sc0000389:268934..270959 (Clytia hemisphaerica)
tttcgtgTTGTTCACCTTCCACGcatcaaaactttttattcagTAGAAAA
AGCTTGGAAATCTTTCAGAAACAAACtctttaattcttttttatttattt
tttggtcgcgttgaaaagttggttttaaGTATGAAACAGTCGATTTAAAG
ACTTTTCTTATTCACCCGACACTGACCTTTTTGCAAGCATTCTTTTCTTC
CCTCTCAATCCGTTCTCGTTCCCTCCTATGCTTCTGTTCTCGTTTCCCCT
ATCCTTCCGTTCTCGTTAACTCTTATCCTTCCGTTCTTGCTCCCTCTTTA
TCATTCCGTTCTCGTTTCCCCCTTATCCTTCCGTtctcgttccttctcat
ccttcCGTTCTCATTTCCCCTATCCTTCCGTTCTCGTTCCCTCTTATCCT
TCCGTTCTTTCTCCCTCTTATCCTTCTGTTCTCGTTCCCTCTTATCCTTC
CGTTCTCGCTCCCTCTTATCCTTCCGTTCTCGTTCCCTCCTTCCGTTCTT
GTTCCCTCTTATCCTTCCGTTTTCGTTCCCTCTTTTCCTTCCGTTCTCGT
TCCCTCTTATCCTTCCGTTCTCGTTCCCTTGTATCATTCCGTTCTCGTTC
TCTCTTATCCTTCCGTTCTTGCTCCCTCTTATCCTTCCGTTCTCGCTCCC
TCTTATCCTTCCGTTCTCGTTCCCTCGTATCCTTCCGTTCTCGTTCCCTC
TTATCCTTCTGTTCTCGTTCCCTCTTATCCTTCCGTTCTTGCTCCCTCCT
ATCCTTCCGTTCTCGTTTCCTCCTATCATTCCCTCCCATCCTTCCGTTCT
CGTTTTCCTCTTATCCTTCTGTTCTCGTTCCCTCTTATCCTTCCGTTCTC
GTTCCCTCGTATCCTTCCGTTCTCCTTCCCTCTTATCCTTCCGTTCTCGT
TCCCTCGTATCCTTCCGTTCTCGTTCCCTCTTATCCTTCCGTTCTTGCTC
CCTCCTATCCTTCTGTTCTCATTTCCTCCTATCATTCCTTCCCATCCTTC
CGTTCTCGTTTTCCTCTTATCCTTCTGTTCTCGTTCCCTCGTATCCTTCC
GTTCTCGTTCCCTCGTATCCTTCCGTTCTTGCTCCCTCTTATCCTTCCGT
TCTCGTTCCTTCTTATCCTTCCGTTCTCGTTCCCTCTTATCCTTCCGTTC
TCGTTCCCTCGTATCCTTCCGTTCTTGCTCCCTCTTATCCTTCGTTCTCG
TTCCTTCTTATCCATCCGTTCTCGTTCCCTCTTATCCTTCCGTTCTCGTT
CCCTCGTATCCTTCCGTTATTGCTCCCTCTCATCCTTCCGTTCTCGTTCC
CTCTTATCCTTCCGTTCTTGCTCCCTTCTATCCTTCCGTTCTCGTTTCCT
CCTATCATTCCCTCCCATCCTTCCGTTCTCGTTTTCCTCTTATCCTTCTG
TTCTCGTTCCCTCTTATCCTTCCGTTCTCGTTCCCTCGTATCCTTCCGTT
CTCGTTCCCTCTTATCCTTCCGTTCTCGTTCCCTCGTATCCTTCCGTTCT
TGCTCCCTCCTATCCTTCCGTTCTCGTTTCCTCCTATCATTCCTTCCCAT
CCTTCCGTTCTCGTTTTCCTCTTATCCTTCTGTTCTCGTTCCCTCGTATC
CTTCCGTTCTCGTTCCCTCGTATCCTTCCGTTCTTGCTCCCTCTTATCCT
TCCGTTCTCGTTCCTTCTTATCCTTCCGTTCTCGTTCCCTCTTATCCTTC
CGTTCTCGTTCCCTTGTATCCTTCCGTTCTCGTTCCCTCGTATCCTTCCG
TTCTCGTTCCCTCGTATCCTTCCGTTCTCGTTCCCTCTTATCCTTCCGCT
CTCGTTTCCTCCTATCATTCCCTCCCATCCTTCCGTTCTCGTTTTCCTCT
TATCCTTCTGTTCTCGTTCCCTCGTATCCTTCCGTTCTCGTTCCCTCGTA
TCCTTCCGTTCTTGCTCCCTCTTATCCTTCCGTTCTCGTTCCTTCTTATC
CTTCCGTTCTCGTTCCCTCTTATCCTTCCGTTCTCGTTCCCTCGTATCCT
TCCGTTCTTGCTCCCTCTTATCCTTC Coding sequence (CDS) from alignment at sc0000389:268934..270959 >TCONS_00021573 ID=TCONS_00021573|Name=TCONS_00021573|organism=Clytia hemisphaerica|type=CDS|length=507bp|location=Sequence derived from alignment at sc0000389:268934..270959 (Clytia hemisphaerica)
TTATCCTTCCGTTCTTGCTCCCTCTTTATCATTCCGTTCTCGTTTCCCCC
TTATCCTTCCGTtctcgttccttctcatccttcCGTTCTCATTTCCCCTA
TCCTTCCGTTCTCGTTCCCTCTTATCCTTCCGTTCTTTCTCCCTCTTATC
CTTCTGTTCTCGTTCCCTCTTATCCTTCCGTTCTCGCTCCCTCTTATCCT
TCCGTTCTCGTTCCCTCCTTCCGTTCTTGTTCCCTCTTATCCTTCCGTTT
TCGTTCCCTCTTTTCCTTCCGTTCTCGTTCCCTCTTATCCTTCCGTTCTC
GTTCCCTTGTATCATTCCGTTCTCGTTCTCTCTTATCCTTCCGTTCTTGC
TCCCTCTTATCCTTCCGTTCTCGCTCCCTCTTATCCTTCCGTTCTCGTTC
CCTCGTATCCTTCCGTTCTCGTTCCCTCTTATCCTTCTGTTCTCGTTCCC
TCTTATCCTTCCGTTCTTGCTCCCTCCTATCCTTCCGTTCTCGTTTCCTC
CTATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021573-exon-sc0000389-1491911889:268934..270959 | TCONS_00021573-exon-sc0000389-1491911889:268934..270959 | Clytia hemisphaerica | exon |
| TCONS_00021573-exon-sc0000389-1510915933:268934..270959 | TCONS_00021573-exon-sc0000389-1510915933:268934..270959 | Clytia hemisphaerica | exon |
| TCONS_00021573-exon-sc0000389-1575043694:268934..270959 | TCONS_00021573-exon-sc0000389-1575043694:268934..270959 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000389 | supercontig | sc0000389:268934..270959 . |
Blast
The following BLAST results are available for this feature:
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