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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021569 ID=TCONS_00021569|Name=TCONS_00021569|organism=Clytia hemisphaerica|type=transcript|length=1003bp
AGGCACCCTGATTGTCATTTTTGACAATAATTGGTTGCGTTTTCGATTGG
AGTAATTCGTTGATCAAACGATTGAGATAAATTGTCTCTTGACAAGTAAT
TGATATAGCCATGTACTCAGCTTCACACGTTGATAAAGCGACAGACGACT
GCTTCTTAGACTTTCAACTGACAGCAGGATCTTCTGGGTTGAGACTAATA
GAGTATTCGGTAACGCTTCGGCGGTCTTTCACAGATGTAGCCCAATCGGC
GTCGCTGAATGCATGAACACGAAGAGGGGTTGATGACTTTCGGAAGGTCA
ACTTGCGATCAACAGTCTTCTTGACGTACTGGAAGACATGTTTTATCATT
GCGCAATCTTCAGGATCAGGACAGGAAAGATGTTGAGATAGTTTGGTTAC
GACAAACGATAGATCAGGTCGGGTACAAGTCATCGCATATATCAGGCTTT
CAACCATTTGACGATATTGGTGGTTGTCGTATATTTGGTGTGTGGCTTCA
GCGTACGAATTGATGTTCTGCTCACACGGTGTCGTTCTTGGTCTACAGTC
ATTGAAACCAAAAGTTTTTAGAATGTTCTTCAAGTAGTGACTTTGTGACA
TGGTGATAGTTTCATCTCGGTGTTCAAATGTTATGCCGAGGAACGTGGAT
AATTGTTCAAGATCTTTCATCTCGAACTTAGTAGATAAGCTTTCTTTGAT
TGACTTCAGGAGTTGCATTGAATTTGCTGCTATAATAATATCATCGACTC
AAACTAGTAGAATGACTGTGTCTCTCTCGTTACGTTTTGAGAAGAGACAT
GGATCGGATGCAGACTGTTTGAAGTTAAGTTCATTGACAACATAGTCATG
TAAGAGTTTGTGCCAGTTGCGGCCGCTTTGCTTAAGGCCATATAACGATT
TCTGCAACTTCCAAACTTTATTTTCGATGGCATAACCGATTGGTTGAGAT
ACGTAGATGTCTTCATCGATAGGTGCGTGTAGAAAAGCTGTTTTGACATT
CAT Run BLAST on NCBI protein sequence of TCONS_00021569-protein >TCONS_00021569-protein ID=TCONS_00021569-protein|Name=TCONS_00021569-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MQLLKSIKESLSTKFEMKDLEQLSTFLGITFEHRDETITMSQSHYLKNIL
KTFGFNDCRPRTTPCEQNINSYAEATHQIYDNHQYRQMVESLIYAMTCTR
PDLSFVVTKLSQHLSCPDPEDCAMIKHVFQYVKKTVDRKLTFRKSSTPLR
VHAFSDADWATSVKDRRSVTEYSISLNPEDPAVS Run BLAST on NCBI transcript from alignment at sc0000389:193154..194156 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021569 ID=TCONS_00021569|Name=TCONS_00021569|organism=Clytia hemisphaerica|type=transcript|length=1003bp|location=Sequence derived from alignment at sc0000389:193154..194156 (Clytia hemisphaerica)
ATGAATGTCAAAACAGCTTTTCTACACGCACCTATCGATGAAGACATCTA
CGTATCTCAACCAATCGGTTATGCCATCGAAAATAAAGTTTGGAAGTTGC
AGAAATCGTTATATGGCCTTAAGCAAAGCGGCCGCAACTGGCACAAACTC
TTACATGACTATGTTGTCAATGAACTTAACTTCAAACAGTCTGCATCCGA
TCCATGTCTCTTCTCAAAACGTAACGAGAGAGACACAGTCATTCTACTAG
TTTGAGTCGATGATATTATTATAGCAGCAAATTCAATGCAACTCCTGAAG
TCAATCAAAGAAAGCTTATCTACTAAGTTCGAGATGAAAGATCTTGAACA
ATTATCCACGTTCCTCGGCATAACATTTGAACACCGAGATGAAACTATCA
CCATGTCACAAAGTCACTACTTGAAGAACATTCTAAAAACTTTTGGTTTC
AATGACTGTAGACCAAGAACGACACCGTGTGAGCAGAACATCAATTCGTA
CGCTGAAGCCACACACCAAATATACGACAACCACCAATATCGTCAAATGG
TTGAAAGCCTGATATATGCGATGACTTGTACCCGACCTGATCTATCGTTT
GTCGTAACCAAACTATCTCAACATCTTTCCTGTCCTGATCCTGAAGATTG
CGCAATGATAAAACATGTCTTCCAGTACGTCAAGAAGACTGTTGATCGCA
AGTTGACCTTCCGAAAGTCATCAACCCCTCTTCGTGTTCATGCATTCAGC
GACGCCGATTGGGCTACATCTGTGAAAGACCGCCGAAGCGTTACCGAATA
CTCTATTAGTCTCAACCCAGAAGATCCTGCTGTCAGTTGAAAGTCTAAGA
AGCAGTCGTCTGTCGCTTTATCAACGTGTGAAGCTGAGTACATGGCTATA
TCAATTACTTGTCAAGAGACAATTTATCTCAATCGTTTGATCAACGAATT
ACTCCAATCGAAAACGCAACCAATTATTGTCAAAAATGACAATCAGGGTG
CCT Coding sequence (CDS) from alignment at sc0000389:193154..194156 >TCONS_00021569 ID=TCONS_00021569|Name=TCONS_00021569|organism=Clytia hemisphaerica|type=CDS|length=555bp|location=Sequence derived from alignment at sc0000389:193154..194156 (Clytia hemisphaerica)
ATGCAACTCCTGAAGTCAATCAAAGAAAGCTTATCTACTAAGTTCGAGAT
GAAAGATCTTGAACAATTATCCACGTTCCTCGGCATAACATTTGAACACC
GAGATGAAACTATCACCATGTCACAAAGTCACTACTTGAAGAACATTCTA
AAAACTTTTGGTTTCAATGACTGTAGACCAAGAACGACACCGTGTGAGCA
GAACATCAATTCGTACGCTGAAGCCACACACCAAATATACGACAACCACC
AATATCGTCAAATGGTTGAAAGCCTGATATATGCGATGACTTGTACCCGA
CCTGATCTATCGTTTGTCGTAACCAAACTATCTCAACATCTTTCCTGTCC
TGATCCTGAAGATTGCGCAATGATAAAACATGTCTTCCAGTACGTCAAGA
AGACTGTTGATCGCAAGTTGACCTTCCGAAAGTCATCAACCCCTCTTCGT
GTTCATGCATTCAGCGACGCCGATTGGGCTACATCTGTGAAAGACCGCCG
AAGCGTTACCGAATACTCTATTAGTCTCAACCCAGAAGATCCTGCTGTCA
GTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021569-exon-sc0000389-1491911889:193154..194156 | TCONS_00021569-exon-sc0000389-1491911889:193154..194156 | Clytia hemisphaerica | exon |
| TCONS_00021569-exon-sc0000389-1510915933:193154..194156 | TCONS_00021569-exon-sc0000389-1510915933:193154..194156 | Clytia hemisphaerica | exon |
| TCONS_00021569-exon-sc0000389-1575043694:193154..194156 | TCONS_00021569-exon-sc0000389-1575043694:193154..194156 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000389 | supercontig | sc0000389:193154..194156 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013103 | RVT_2 |
Blast
The following BLAST results are available for this feature:
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