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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021568 ID=TCONS_00021568|Name=TCONS_00021568|organism=Clytia hemisphaerica|type=transcript|length=2422bp
attttgtccagtttttgtgCTTTTTGAAGCGGCCTGAGACCATCATATTT
Gtctgaaaatcacaccaaagtgtccaaaaaaaattggcgctcaagttatt
ttgattctcctaccccttagctttccaaaaatgtataacaagttctttga
ctaaaaaaattgagtgacctcaaaaaaacgaacaaatttccgaCTGCTAG
GAGGTCAGTATCACTTGAAAAAGTTGTTTTCCTCTCTGACCAATAAATAA
AGAAGTAAAGTTTCAATCAGTTATTCCAACCTTCCATATCCTATCATTCA
TGTTTCTAAACAGGTGTCGGAGAATTCGAAGAGAGATGTTCGTTTAGACC
AACTTAAGGTAGGGTGTGTCAGAATCTTAGggtccaaccccccccccaga
aatttgggggtacctaaaaaaagcattaaaaaagCCATGTAACTGgaagt
attcttaaatttaggattgtgtacctgatatgtttgtgggtacctgcatt
ttcattagtgggggcgggggctgttgtttttgtatgaagtaTTTCCTTGA
ATACAGTAgcccaattttccaattttgaattgaaCCTTTTCACTGCTAAG
ACTTTATAACTTTGTCTGTCTTTCCCATTTCACCCAGTATGCTTCTTGTA
CACTGTACTTTAAATCACATCACAGTGAAGGAAAACAAGCCAGTCTCGCA
AGGAGAAGAACATAATATTTTTTCGCTGACCAAATGGGTAACTCAAAGCT
GGGGGCTacttaagaattttaaaaatgttggtGGTACTTACCAAAGTGAT
TGGGGGTATAtacaggccatattttagaaaggcaaggcagcgtCTGTTAG
TGGCCAAAAAAGGCACCTTTTCCAGTggttttccactaaaaaggctgttt
ttaccaatattttggtaatttcagGTGGGGCAGTGTCCGATAACCGGACG
CTAAAAGGGCATAAAAAATAGCCTGATATACCTAATttttttgggggtac
ctaaaccctGGAGGACCCTAATAGAATACATTTCGCTAAATGCTCAGAGC
ACGACAACCTATATTATCCCTTACCTATCTTTCACTTTACCATGTTTCTT
TTGACTTTATACTTGGTTTGCTATATGTAACTGAGTTTTCTTACCTGTCA
ATTttatttgtccatcaatttcgaccaaccAAATtatcgcaccgagtggg
attcaaAGACCTTCGGATTTGGAATTTATATCCTTTATTGTGACTCTCAA
GTCCAACTCTGAACCTAACTAGTAATGGCCCAATACCCCCTGAATTACAG
ATTGACAAAGAGGAAAagttattgagaaaaaaatagcTCATCACAAGCGT
AAAGCCAAGTTTGtcagaattagatgagggatgttgacattagaccaact
taccgTAGCTTTGTCCTCTCTGTTAGTTAGACTTTTTATACTCTTGTGAG
AATATTTAAATACTATTAGGAATGTTACTGTCTTGAGTGATAGGAATTAA
GACTCCATCAGTTATTTGTACCAAGTTTTAACTTTTATCACCATTTTTAA
GGTATCATTGTACTAAAAGGCTCCACTATCTCTGTTTGTTAGATTCTACC
AAACGAACTCATGAATTTTTAAAGTAACTcctaaaaacaatgaaaaaaat
agtttgttttGGTGATTCTCTTACCGAGGGTTGGATCGATGCTGGAAGTG
CCTTTCACCCTTACACTGAAAAACTTCAAAGCTTGTTATCACAAAATTCT
AATGCTAACGTCATAAATGCTGGTATAAGTGGTGAAACTATTTGTGTTGA
TATGATGAAAAGGCTACCTGGTGTCTTGCATCAAGATGGTTCAGTTGATA
TACTGATCATACAAGGTGGTAcaaatgacattttgcaaaaGCCAGAACTT
GAACATTCAATTGACCTGTATGAAAAGTTCAAAGAGTTGATTTCAATCGC
TGTTGATAAAGGTGTGAGTAAAATCTTAGTCTTGACCACTATGGAGGGTT
TTTTTGTGGAATCAGATGAGGCTTCAATGAGTCAAGAAATTAGTGATAAG
TTAAGGAGAGACTTCAATACCAAAATGACCAACAATGTGACTTCATTATC
TACCAATACAACAGAGATTTGTTTATGTGATTTATCAAGCAAGCTTCCAA
TGTTTTCCTTGGATGAGAAAGATGTGAAATTGTATTGGGATGATTATCTA
CACCCTTCACCTCTTGGGTATGATAAAATGGGTGAAATTGTTTATGAAGA
GTTGAAATCTTTAAGTTGGATTTAAAACAATTGGATTGAGCTTGACTACT
GTTTATAAGATAGTCataaatagttttttcttaGAGTTTTGTATTTACAC
CATACATTTTTACAtacattttattcatttttatgtCCTGATTTTTAAGA
TAGTTTTACCACCCTTCTGAAT Run BLAST on NCBI protein sequence of TCONS_00021568-protein >TCONS_00021568-protein ID=TCONS_00021568-protein|Name=TCONS_00021568-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
MKKIVCFGDSLTEGWIDAGSAFHPYTEKLQSLLSQNSNANVINAGISGET
ICVDMMKRLPGVLHQDGSVDILIIQGGTNDILQKPELEHSIDLYEKFKEL
ISIAVDKGVSKILVLTTMEGFFVESDEASMSQEISDKLRRDFNTKMTNNV
TSLSTNTTEICLCDLSSKLPMFSLDEKDVKLYWDDYLHPSPLGYDKMGEI
VYEELKSLSWI Run BLAST on NCBI transcript from alignment at sc0000389:174321..176742 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021568 ID=TCONS_00021568|Name=TCONS_00021568|organism=Clytia hemisphaerica|type=transcript|length=2422bp|location=Sequence derived from alignment at sc0000389:174321..176742 (Clytia hemisphaerica)
ATTCAGAAGGGTGGTAAAACTATCTTAAAAATCAGGacataaaaatgaat
aaaatgtaTGTAAAAATGTATGGTGTAAATACAAAACTCtaagaaaaaac
tatttatGACTATCTTATAAACAGTAGTCAAGCTCAATCCAATTGTTTTA
AATCCAACTTAAAGATTTCAACTCTTCATAAACAATTTCACCCATTTTAT
CATACCCAAGAGGTGAAGGGTGTAGATAATCATCCCAATACAATTTCACA
TCTTTCTCATCCAAGGAAAACATTGGAAGCTTGCTTGATAAATCACATAA
ACAAATCTCTGTTGTATTGGTAGATAATGAAGTCACATTGTTGGTCATTT
TGGTATTGAAGTCTCTCCTTAACTTATCACTAATTTCTTGACTCATTGAA
GCCTCATCTGATTCCACAAAAAAACCCTCCATAGTGGTCAAGACTAAGAT
TTTACTCACACCTTTATCAACAGCGATTGAAATCAACTCTTTGAACTTTT
CATACAGGTCAATTGAATGTTCAAGTTCTGGCttttgcaaaatgtcattt
gTACCACCTTGTATGATCAGTATATCAACTGAACCATCTTGATGCAAGAC
ACCAGGTAGCCTTTTCATCATATCAACACAAATAGTTTCACCACTTATAC
CAGCATTTATGACGTTAGCATTAGAATTTTGTGATAACAAGCTTTGAAGT
TTTTCAGTGTAAGGGTGAAAGGCACTTCCAGCATCGATCCAACCCTCGGT
AAGAGAATCACCaaaacaaactatttttttcattgtttttaggAGTTACT
TTAAAAATTCATGAGTTCGTTTGGTAGAATCTAACAAACAGAGATAGTGG
AGCCTTTTAGTACAATGATACCTTAAAAATGGTGATAAAAGTTAAAACTT
GGTACAAATAACTGATGGAGTCTTAATTCCTATCACTCAAGACAGTAACA
TTCCTAATAGTATTTAAATATTCTCACAAGAGTATAAAAAGTCTAACTAA
CAGAGAGGACAAAGCTAcggtaagttggtctaatgtcaacatccctcatc
taattctgaCAAACTTGGCTTTACGCTTGTGATGAgctatttttttctca
ataactTTTCCTCTTTGTCAATCTGTAATTCAGGGGGTATTGGGCCATTA
CTAGTTAGGTTCAGAGTTGGACTTGAGAGTCACAATAAAGGATATAAATT
CCAAATCCGAAGGTCTttgaatcccactcggtgcgataATTTggttggtc
gaaattgatggacaaataaAATTGACAGGTAAGAAAACTCAGTTACATAT
AGCAAACCAAGTATAAAGTCAAAAGAAACATGGTAAAGTGAAAGATAGGT
AAGGGATAATATAGGTTGTCGTGCTCTGAGCATTTAGCGAAATGTATTCT
ATTAGGGTCCTCCagggtttaggtacccccaaaaaaATTAGGTATATCAG
GCTATTTTTTATGCCCTTTTAGCGTCCGGTTATCGGACACTGCCCCACct
gaaattaccaaaatattggtaaaaacagcctttttagtggaaaaccACTG
GAAAAGGTGCCTTTTTTGGCCACTAACAGacgctgccttgcctttctaaa
atatggcctgtaTATACCCCCAATCACTTTGGTAAGTACCaccaacattt
ttaaaattcttaagtAGCCCCCAGCTTTGAGTTACCCATTTGGTCAGCGA
AAAAATATTATGTTCTTCTCCTTGCGAGACTGGCTTGTTTTCCTTCACTG
TGATGTGATTTAAAGTACAGTGTACAAGAAGCATACTGGGTGAAATGGGA
AAGACAGACAAAGTTATAAAGTCTTAGCAGTGAAAAGGttcaattcaaaa
ttggaaaattgggcTACTGTATTCAAGGAAAtacttcatacaaaaacaac
agcccccgcccccactaatgaaaatgcaggtacccacaaacatatcaggt
acacaatcctaaatttaagaatacttcCAGTTACATGGcttttttaatgc
tttttttaggtacccccaaatttctggggggggggttggaccCTAAGATT
CTGACACACCCTACCTTAAGTTGGTCTAAACGAACATCTCTCTTCGAATT
CTCCGACACCTGTTTAGAAACATGAATGATAGGATATGGAAGGTTGGAAT
AACTGATTGAAACTTTACTTCTTTATTTATTGGTCAGAGAGGAAAACAAC
TTTTTCAAGTGATACTGACCTCCTAGCAGtcggaaatttgttcgtttttt
tgaggtcactcaatttttttagtcaaagaacttgttatacatttttggaa
agctaaggggtaggagaatcaaaataacttgagcgccaattttttttgga
cactttggtgtgattttcagaCAAATATGATGGTCTCAGGCCGCTTCAAA
AAGcacaaaaactggacaaaat Coding sequence (CDS) from alignment at sc0000389:174321..176742 >TCONS_00021568 ID=TCONS_00021568|Name=TCONS_00021568|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at sc0000389:174321..176742 (Clytia hemisphaerica)
TTAAATCCAACTTAAAGATTTCAACTCTTCATAAACAATTTCACCCATTT
TATCATACCCAAGAGGTGAAGGGTGTAGATAATCATCCCAATACAATTTC
ACATCTTTCTCATCCAAGGAAAACATTGGAAGCTTGCTTGATAAATCACA
TAAACAAATCTCTGTTGTATTGGTAGATAATGAAGTCACATTGTTGGTCA
TTTTGGTATTGAAGTCTCTCCTTAACTTATCACTAATTTCTTGACTCATT
GAAGCCTCATCTGATTCCACAAAAAAACCCTCCATAGTGGTCAAGACTAA
GATTTTACTCACACCTTTATCAACAGCGATTGAAATCAACTCTTTGAACT
TTTCATACAGGTCAATTGAATGTTCAAGTTCTGGCttttgcaaaatgtca
tttgTACCACCTTGTATGATCAGTATATCAACTGAACCATCTTGATGCAA
GACACCAGGTAGCCTTTTCATCATATCAACACAAATAGTTTCACCACTTA
TACCAGCATTTATGACGTTAGCATTAGAATTTTGTGATAACAAGCTTTGA
AGTTTTTCAGTGTAAGGGTGAAAGGCACTTCCAGCATCGATCCAACCCTC
GGTAAGAGAATCACCaaaacaaactatttttttcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021568-exon-sc0000389-1491911889:174321..176742 | TCONS_00021568-exon-sc0000389-1491911889:174321..176742 | Clytia hemisphaerica | exon |
| TCONS_00021568-exon-sc0000389-1510915933:174321..176742 | TCONS_00021568-exon-sc0000389-1510915933:174321..176742 | Clytia hemisphaerica | exon |
| TCONS_00021568-exon-sc0000389-1575043694:174321..176742 | TCONS_00021568-exon-sc0000389-1575043694:174321..176742 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000389 | supercontig | sc0000389:174321..176742 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR013830 | SGNH_hydro |
Blast
The following BLAST results are available for this feature:
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