TCONS_00021561 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00021561
Unique Name	TCONS_00021561
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1008

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000389:199539..202546-

transcript sequence

>TCONS_00021561 ID=TCONS_00021561|Name=TCONS_00021561|organism=Clytia hemisphaerica|type=transcript|length=1008bp
ATTCTCTCTTGCCAGTTTTAGATCCTTAAATTAATATGATCAAAAGACTT
CTATTCAGCAAAGCGACCTTAGGAATTTTATTATGTAGTTGTTTGTTACT
TGGCCTGGCATACTTCCAACCGGACGTCCGACATTCgatacaaaatttac
aaaagagATTATGGATGGGATCAACAGTCAAGACGAAGCTTCATTTGCGT
GACACCATTTTCAAGCATGCTGCCGTGGCAACTGACAACAAGAAATGCAG
TAAAATCGGAAGCCAGATACTTAAAGATGGTGGATCAGCTGTAGATAGTG
CGATTGCTTCAATGTTATGTTTAGGTGTGATGAACCCACACAGTACAGGG
ATCGGTGGTGGAGGTTTCATGCTTATTTAcatgaaagagaaaaaagaagc
ACGTGTTATTGACTTTCGTGAAAGTGCTCCTTCAAAAGCTCATGAAAATC
TGTTCAAAGGAAATCCAGAAAACGGCATTAGAGGTGGATTATCTGTGGGA
ATTCCCGGtgaattacgaggtatgcaatATGCCCATGAGTTGTATGGAAA
ACTACCATGGAAAAAGTTGTTTCAACCTGCCATCAAACTATGCAATGAAG
GATATAAGATCACTGAATCATTGGGAATTGCTCTGGATAAATGGAAAGAT
GATGTGATAAATGAGAGTTGTCTCAGaaacCAGTACATTCAAAAGGGTAA
AGCATTAAAAGCAGGAGACACAGTGTACAACAAAGCGCTTGGGAAAACAC
TATCCATCTTGGCTGAAGCAGGAAATGCAGATCCTTTTTATAACGGTGAA
TTGACCTCAACTATCGTGAAAGAGATCAAAGCTCAAGGTGGTATAATctc
aaagaaagatttgaaaaattatgaagcCATCTCAAGAGAACCTCTGGTTA
CTAAGCTAGGAGAAGATACGGTTGTGACGTCACCACCACCTGCTAGTGGA
CCCATTTTGGCATACATACTAAATATTCTGAAAGGATATAAAATGGACGA
AAGTGATA

Run BLAST on NCBI

transcript from alignment at sc0000389:199539..202546-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00021561 ID=TCONS_00021561|Name=TCONS_00021561|organism=Clytia hemisphaerica|type=transcript|length=3008bp|location=Sequence derived from alignment at sc0000389:199539..202546- (Clytia hemisphaerica)
ATTCTCTCTTGCCAGTTTTAGATCCTTAAATTAATATGATCAAAAGACTT
CTATTCAGCAAAGCGACCTTAGGAATTTTATTATGTAGTTGTTTGTTACT
TGGCCTGGCATACTTCCAACCGGACGTCCGACATTCGATACAAAATTTAC
AAAAGAGATTATGGATGGGATCGTAAGAATTTTTCTGATATTTTAAGTCA
TTTTCAGATTTTCTTTGGGTCGTGAAAAAGGTTTAAACTGAAAGTACATT
TTGAGACATGTTATTTCTAAAGTCAACTTTTTTTAAAAGAAATCTCCTTC
TTGTAGAGCTTACAACTAAGAAAGATTGAAATCAAGAATGGTCTAAAGCG
TAGAAAATAATTCTGCCCCATGGAAGGGTCATCCTTTTTATTATTTGATA
ACTAATCTTTGACCTACTAAATAATATTGTATTTGTGACCTTTCTAACAG
AACAGTCAAGACGAAGCTTCATTTGCGTGACACCATTTTCAAGCATGCTG
CCGTGGCAACTGACAACAAGAAATGCAGTAAAATCGGAAGCCAGATACTT
AAAGATGGTGGATCAGCTGTAGATAGTGCGATTGCTTCAATGTTATGTTT
AGGTATTGATATGGTTTTTTCTCCCACTACAACACCTGTCTCAGCCGCCT
TTACCTTTCGCTGGCTGTTGCCGTTCAGTTAGCTCTAGTTTAGACGGCTC
ACGTTTCGCCCTGCCTATTCTAATTGTAAGAGTAGGCACAATAAAGTGGA
CAGTTAACGTCTTTGCTAGAAAAGGGTTGAAAGAAGACATTGCATTGACG
TCAAAAGCCAACTTTCTGCCCACTTTAAATCACAATTTGAATAGGCAGGG
CGAAAAGTGGGCCGTCTAAACTTAGAGCTTACGCTCTAAAATGCCTTTTT
ACCGGTCTTCCATTAACATGTCGTAAATAAGAACTACAGTACCTCTTTTG
TAACGAAAATATCTGAAGTCTAAGAATAGTTGTCCACGAAGGCTAAGAGC
TCTCAAATGGTGCAAAAATTATTTCTTCAGTTTTTTAAATTGAACCCTAA
TAACAACCTCAAGTTATCTTTTTCCCATTGCAGGTGTGATGAACCCACAC
AGTACAGGGATCGGTGGTGGAGGTTTCATGCTTATTTACATGAAAGAGAA
AAAAGAAGCACGTGTTATTGACTTTCGTGAAAGTGCTCCTTCAAAAGCTC
ATGAAAATCTGTTCAAAGGAAATCCAGAAAACGGCATTAGAGGTGAGTCT
TATGTCTTATAAATCTTCATTTTAGAAAAGATCTCACTACCGATCGGGAA
CACAGTGTTACACTCTTTCTGCTTTATAAGTTTACAGGAAACATTTGGGC
TTGGACCCATTATGCTTTCCATTTTCAGCCTTTAATTATGCTTATTCATA
TGTTTAGAAAGTTTTTTCAAAACGTCGAAAATTTTAGCTAATTTTCATTT
TACCTTTACTTTTTACGATATAACAGATCATATTCTTACGTTTTATATCA
AAGAACATTGTTTAAACGTGTTGAAGTCAAAATATTCGTTGTCTACCTCC
CTGTCTCATTGATCCCAATGTCAAAAATTTGAATTATGAATTTTCCCAGC
CTCGAGGTCTTCTCAACCAGTAAAAAAGTATCAAATCAACAGCGTACATT
CAACATACATATTACATTTTGGAAAAATATTTTATGTGAACTGGATCAAA
AAAGATTGTGTTTTCGTTTTATACCAGGTGGATTATCTGTGGGAATTCCC
GGTGAATTACGAGGTATGCAATATGCCCATGAGTTGTATGGAAAACTACC
ATGGAAAAAGTTGTTTCAACCTGCCATCAAACTATGCAATGAAGGATATA
AGATCACTGAATCATTGGGAATTGCTCTGGATAAATGGAAAGATGATGTG
ATAAATGAGAGTTGTCTCAGGTAAGGTTTCCTCCATGGCGAAGTGACGTC
ACAATACAACATCTTTTAATATTTTCAGACAAATTGAGCCCCCACCAAAT
CGAAGTCGCTACACGCTTGCTAGGCCTGTAGATTCAGACTCGTTTTTTCT
TTTTCATTCTCTTCGAGTTAAGTTTATTGATTTCATTGGCGGTTAGATTA
TGTAATACAAAGTTGACTCGATGAACACCCACTTTAGCCCTTTCTTTGAA
TAAGATGGTCAGGGGCTTCCCTTATATACATGCTGCAATCCTCACTACAA
GAATATGATACTATGATCTTCAGCAACCCTTATTTCGGCTTCATCTAACG
TTACGTGGACGTTAGATGGACTATGAAACAGCATTGTTATAATTATCCGC
CGGATATATAAAGATCTTTGCTATCTGTTGCCTAAAGTCGAAGTACGCAA
TTTCCATTGCTATTTAATAATGGGAAATCTTTTTAATTTTCAGAAACCAG
TACATTCAAAAGGGTAAAGCATTAAAAGCAGGAGACACAGTGTACAACAA
AGCGCTTGGGAAAACACTATCCATCTTGGCTGAAGCAGGAAATGCAGATC
CTTTTTATAACGGTGAATTGACCTCAACTATCGTGAAAGAGATCAAAGCT
CAAGGTGGTATAATCTCAAAGAAAGATTTGAAAAATTATGAAGCCATCTC
AAGAGAACCTCTGGTTACTAAGCTAGGAGAAGATACGGTTGTGACGTCAC
CACCACCTGCTAGTGGACCCATTTTGGCATACATACTAAATATTCTGAAA
GGTATGCACTTCCTGTTGTTAGTGTGGAGATGAAAAGATATTCAAGAGTC
TCTTTTTTCAACAAGCACGAAACCGCTATCTTGTTCAAATTCTATCAAAA
GTTAGTCTCAGCTGCATATTATACTGTATTGAGACCGACTTCAGTTCGTC
TCTTTCACCCGCTCATTACTCGCTGTCATGTTTCGACGATCTTCTAACGT
TTTTCTTAAATCGGCACGATGTTAAATGGACGCAACAAAGCTGCCACCTC
GAATGCATAACCTATGGTACCTTTCTTCTTTCAGGATATAAAATGGACGA
AAGTGATA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_012088	XLOC_012088	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000389	supercontig	sc0000389:199539..202546 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.130141	0	0	1.36355	0.986224	5.29561	4.12282	0.722524	0.652009	5.57138	4.01238	4.27173	0	3.17611	8.12917	6.0631	6.34258	0	0	2.75403	3.12418	1.82349	0.114828	1.43545	0.417418	0.567902	0.126064	0	0

Blast

[Close]

BLAST of TCONS_00021561 vs. Swiss-Prot (Human)
Match: GGT1 (Glutathione hydrolase 1 proenzyme OS=Homo sapiens GN=GGT1 PE=1 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 2.958e-72
Identity = 124/280 (44.29%), Postives = 174/280 (62.14%), Query Frame = 3

Query:  159 LWMGSTVKTKLHLRDTIFKHAAVATDNKKCSKIGSQILKDGGSAVDSAIASMLCLGVMNPHSTGIGGGGFMLIYMKEKKEARVIDFRESAPSKAHENLFKGNPENGIRGGLSVGIPGELRGMQYAHELYGKLPWKKLFQPAIKLCNEGYKITESLGIALDKWKDDVINESCLRNQYIQKGKALKAGDTVYNKALGKTLSILAEAGNADPFYNGELTSTIVKEIKAQGGIISKKDLKNYEA-ISREPLVTKLGEDTVVTSPPPASGPILAYILNILKGYKM 995
            LW+ S  K      + ++  AAVA D K+CSKIG   L+DGGSAVD+AIA++LC+G+MN HS GIGGG F+ IY    ++A VI+ RE AP  A   +F  + E   +GGLSV +PGE+RG + AH+ +G+LPW +LFQP+I+L  +G+ + + L  AL+  +  +  +  L   + +  K L+ G+ +    L  T   LA  G A  FYNG LT+ IVK+I+A GGI++ +DL NY A +   PL   LG+  +     P SGP+LA ILNILKGY  
Sbjct:   24 LWLPSASKEP---DNHVYTRAAVAADAKQCSKIGRDALRDGGSAVDAAIAALLCVGLMNAHSMGIGGGLFLTIYNSTTRKAEVINAREVAPRLAFATMFNSS-EQSQKGGLSVAVPGEIRGYELAHQRHGRLPWARLFQPSIQLARQGFPVGKGLAAALENKRTVIEQQPVLCEVFCRDRKVLREGERLTLPQLADTYETLAIEG-AQAFYNGSLTAQIVKDIQAAGGIVTAEDLNNYRAELIEHPLNISLGDVVLYMPSAPLSGPVLALILNILKGYNF 298

The following BLAST results are available for this feature:

BLAST of TCONS_00021561 vs. Swiss-Prot (Human)

BLAST of TCONS_00021561 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GGT1	2.958e-72	44.29	Glutathione hydrolase 1 proenzyme OS=Homo sapiens ...	[more]

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TCONS_00021561 (transcript) - C. hemisphaerica