TCONS_00021555 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021555
Unique NameTCONS_00021555
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length308

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021555 ID=TCONS_00021555|Name=TCONS_00021555|organism=Clytia hemisphaerica|type=transcript|length=308bp
TAGCACCAAATGTTGGACATACTTACAATATTAACTACATCAACTACCAA
ACAATGATTTATGCAAGACAAGATCACCAACATCATACAACCATTAATCA
TCTCCATAATGATGCTGAAGTAGAATCAAAGACATTAAGCAAAGCAGACA
TCGAGAAGATTGAATCAGGCAACGTGACGCTTTTAGCAAACGACCCAAAA
TTATCAGAAAAAGTAAAGAGTTATTCTCTCTTCTATGCTAGAGACAAACT
TATCAAACCATATCGTCGACTAGATAATTGGATCAAAGAAGATCCTAAAT
GGCAGCCA
Run BLAST on NCBI

protein sequence of TCONS_00021555-protein

>TCONS_00021555-protein ID=TCONS_00021555-protein|Name=TCONS_00021555-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
APNVGHTYNINYINYQTMIYARQDHQHHTTINHLHNDAEVESKTLSKADI
EKIESGNVTLLANDPKLSEKVKSYSLFYARDKLIKPYRRLDNWIKEDPKW
QP
Run BLAST on NCBI

transcript from alignment at sc0000389:128859..132218-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021555 ID=TCONS_00021555|Name=TCONS_00021555|organism=Clytia hemisphaerica|type=transcript|length=3360bp|location=Sequence derived from alignment at sc0000389:128859..132218- (Clytia hemisphaerica)
TAGCACCAAATGTTGGACATACTTACAATATTAACTACATCAACTACCAA
ACAATGATTTATGCAAGACAAGATCACCAACATCATACAACCATTAATCA
TCTCCATAATGATGCTGAAGTAGAATCAAAGACATTAAGCAAAGCAGGTG
TGACTTTTACCTTGTCTAATAAAATCTTTTTATTGATCTGCCTGTTTATC
CTGAATTTTGATACCTTGGCAAAAATTAATGATATCAATGGATTTTAGAC
AATTAGGGCTAGTTTAGTTGACTGAAAAGTATCTTCTACTTAAATTAAGT
GTACACAGAAAAATTCGATATAACGTAGCTTTGTTCGCAATTCGACGACA
ACAACACTCTAGTATATCTTCATTTTATTAAAATTTCACATGTGATGTAA
ATCCACGATTTCATATGTGTAATTTTATTTTTTTGGACCTACCCCGGTGG
GGTAGAGGTCCTATAAATTAACCGATGTCCGTTCGTCTGTTCGTCCGTTC
GTCCGTCTGTTACCAGCTTTTCTCAGGATTGGCTCATTAGTTTTTTCTAA
TTTTTGGCACAATGATGCAAAATGGCAATGCCCAAAATGTGACGAAGCCC
GATTTTGGAAAAAAAAAAATTTTCCGGCCCAAAATGCCGGAAATATGCCG
GAAAAACTGGTTTTTTGGCATTTTCTCGAGATTTTATCATTAGTTTTTTC
TGATTTTTTGCTCAAAGATGCGTATTAACAATGCCCAAAACATGGCTGAG
TCCAATTTTCGAGAAAAATTTTTTTCCGGCTTAAAATGCCGGAAATATGC
CGGAAAACGCCGTTTTTCTGGATTTTCATTGGACTTTTTCCTTATAATTG
ATTGTTTTTTCACTCAAAAAGATTATTAATAGCAATGCCCACCATTAAGT
ATGTTTTAATTTTCAATAAAATTGATTTTTGAAGCCGGAACTATTTAAAA
ATCGCCGGAACAACCTAATTTCGCCGGAAAGACCGTATTTCTTGAATTTC
TCGAGCTGTACTTTATATTTTTTTATGAAATTTTGCACACTGATGCAAAA
TGACAATACCTAAAATGTGACGGAGCCCGATTTTCAAAAAACATTTTTCC
CGGCCGAAAATGCCGGAAATATGCCGGAAAAACCGTTTTTTTGGCATTTT
ATCGAGATTTCATCATTAGTTTTTTCTGATTTTTTGCACAAAGATGCGTA
CTAGCAATGCCCAAAACATGGCCGAGTTCGATTTTTGAGTAAAATTCTTT
TCTGGCCGAAAATGCCAGAAATATACCGAAAATCGCCGTTTTTGCAGATT
TTCATTGGACTTTTTCCTGATATTTCTTTGTTTTTTCACGCAAAATCATT
ATGGTATCAATGCCAACCATCAGGTATGGTTCAATTGTCAATAAAACTGA
TTTTTGATACCGGGACTTTCTAAAAATCGCCGGAACAGCCGAATATCGTC
GGAAAAACGGTTTTTCTTAAATTTCTCGAGCTGTACTTTATATTTTTTCA
TGAAATTTTGCACACTGATGCAAAATGGCAATACCTAAAATGTGACGGAG
CCTGATTTTTGAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTCGCTAACCGCTATATTTTCTTAATGATTGTTTTT
CTCCTTATTGCTATCTAAGTTTCATCATCAGGTAGGTCCATTCAGCATGT
TGCTTGTTTAACTTTCAGACATCGAGAAGATTGAATCAGGCAACGTGACG
CTTTTAGCAAACGACCCAAAATTATCAGAAAAAGTAAAGAGTAAGTATAG
ACTTTTTCTTCTTAATCTTTGAAGATTCAAAAAGTTTTCAGGTGTTTTGT
TTATCAATAACGGAAACTGAATTTTTCTTATCAAATTTTGAATATTTAGT
ACAATACCAATTAAATCACTTTTCCTTTCTTATCACCACGTATTAACAAT
GAAAATGAAATTTATGGGCGATCCAAAAAATATCTACAATCTGATTGGTT
AAAAAGAGCACAATATTACATATAAAAATATAAATTGACGAAAAGATTTT
GTTGCATTGTAGCGTCAGAAGCAATTTAACGGCACTTTGCTACAAAAGTG
CCCTGCATTTTTTAGGTCACCAATAACTATTACGTATCCATATTTAGAAT
TAATATTTATTTTATTTGTAGGTTATTCTCTCTTCTATGCTAGAGACAAA
CTTATCAAACCATATCGTCGACTAGATAATTGGATCAAAGAAGATCCTAA
ATGGCAGCCA

Coding sequence (CDS) from alignment at sc0000389:128859..132218-

>TCONS_00021555 ID=TCONS_00021555|Name=TCONS_00021555|organism=Clytia hemisphaerica|type=CDS|length=918bp|location=Sequence derived from alignment at sc0000389:128859..132218- (Clytia hemisphaerica)
GTTATTCTCTCTTCTATGCTAGAGACAAACTTATCAAACCATATCGTCGA
CTAGATAATTGGATCAAAGAAGATCCTAAATGGCAGCCAACATCGAGAAG
ATTGAATCAGGCAACGTGACGCTTTTAGCAAACGACCCAAAATTATCAGA
AAAAGTAAAGAGCACCAAATGTTGGACATACTTACAATATTAACTACATC
AACTACCAAACAATGATTTATGCAAGACAAGATCACCAACATCATACAAC
CATTAATCATCTCCATAATGATGCTGAAGTAGAATCAAAGACATTAAGCA
AAGCAGGTTATTCTCTCTTCTATGCTAGAGACAAACTTATCAAACCATAT
CGTCGACTAGATAATTGGATCAAAGAAGATCCTAAATGGCAGCCAACATC
GAGAAGATTGAATCAGGCAACGTGACGCTTTTAGCAAACGACCCAAAATT
ATCAGAAAAAGTAAAGAGCACCAAATGTTGGACATACTTACAATATTAAC
TACATCAACTACCAAACAATGATTTATGCAAGACAAGATCACCAACATCA
TACAACCATTAATCATCTCCATAATGATGCTGAAGTAGAATCAAAGACAT
TAAGCAAAGCAGGTTATTCTCTCTTCTATGCTAGAGACAAACTTATCAAA
CCATATCGTCGACTAGATAATTGGATCAAAGAAGATCCTAAATGGCAGCC
AACATCGAGAAGATTGAATCAGGCAACGTGACGCTTTTAGCAAACGACCC
AAAATTATCAGAAAAAGTAAAGAGCACCAAATGTTGGACATACTTACAAT
ATTAACTACATCAACTACCAAACAATGATTTATGCAAGACAAGATCACCA
ACATCATACAACCATTAATCATCTCCATAATGATGCTGAAGTAGAATCAA
AGACATTAAGCAAAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012085XLOC_012085Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021555-proteinTCONS_00021555-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021555-exon-sc0000389-1575043694:132072..132218TCONS_00021555-exon-sc0000389-1575043694:132072..132218Clytia hemisphaericaexon
TCONS_00021555-exon-sc0000389-1575043694:129329..129400TCONS_00021555-exon-sc0000389-1575043694:129329..129400Clytia hemisphaericaexon
TCONS_00021555-exon-sc0000389-1575043694:128859..128947TCONS_00021555-exon-sc0000389-1575043694:128859..128947Clytia hemisphaericaexon
TCONS_00021555-exon-sc0000389-1510915933:132072..132218TCONS_00021555-exon-sc0000389-1510915933:132072..132218Clytia hemisphaericaexon
TCONS_00021555-exon-sc0000389-1510915933:129329..129400TCONS_00021555-exon-sc0000389-1510915933:129329..129400Clytia hemisphaericaexon
TCONS_00021555-exon-sc0000389-1510915933:128859..128947TCONS_00021555-exon-sc0000389-1510915933:128859..128947Clytia hemisphaericaexon
TCONS_00021555-exon-sc0000389-1491911889:132072..132218TCONS_00021555-exon-sc0000389-1491911889:132072..132218Clytia hemisphaericaexon
TCONS_00021555-exon-sc0000389-1491911889:129329..129400TCONS_00021555-exon-sc0000389-1491911889:129329..129400Clytia hemisphaericaexon
TCONS_00021555-exon-sc0000389-1491911889:128859..128947TCONS_00021555-exon-sc0000389-1491911889:128859..128947Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000389supercontigsc0000389:128859..132218 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.29796	2.0956	3.24425	5.15774	27.5312	25.5723	13.8143	16.3815	9.65816	17.5709	12.3375	7.87165	12.1484	9.64768	10.9824	18.5517	12.0992	8.54314	7.61472	25.1	5.54069	5.06729	4.5173	8.21376	9.99815	12.0119	20.1356	18.3445	12.7211	14.1758
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021555 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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