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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021537 ID=TCONS_00021537|Name=TCONS_00021537|organism=Clytia hemisphaerica|type=transcript|length=2671bp
TGTCAACCTACAATATAGCTAAAGAAACATAAAAGGATGAATCGTTTTGC
GAAGCTAGCCCGTTTTTCGATGAAAAATTTACAGCATCGATGTTACGTCA
CATCTAATATACGAACAGTCGACTTACGCTCAGACACTTTGACGCGGCCG
AGCGCTGAGATGAGGCGTGCTATGTTTGCAGCAGAAGTCGGAGATGACGT
TTATAAAGAAGATGAAACTGTGAATGAGTTAGAGAGACTAGCTGCTCAGC
TATTTGGAATGGAAAAGGCTTTGTTTGTGCCGACTGGTACCATGGGCAAT
CTTTTATGTTTAATGTCTCATTGTTATGGGCGTGGCGAAGAGCTCATCAT
TGGATCGAACCAACACGTGTATTTGTATGAGCAAGGACATTTCATGCGAT
TGGCTGGAATCGGCGCACGTGTTCTATCGAACGAACCAGATGGGACGATC
AAACTAGAATCAATCAAACAAAACATAAGAGATGCATCCGATTTTCACCA
ATCAGAAACTAAGCTAATTTGTTTGGAGAACACTCACATGAATTGTGGTG
GGATCCCTCTTACCAATGACTATTTGAAACAAGTTGGCCAATTAGCACGT
GAAAATGGGTTGCAATTACATATTGATGGCGCTAGAGTGTTTAATGCAGC
TGTTGCAACTAACCAACCTTTATCTGATATTTTGGTAGAGGCTAACTCGG
TTTCTATGTGTTTATCAAAAGGACTTGGGTGCCCTATTGGCTCAGTAATA
GGTGGCAGTGAAGAGCTAGTGAATAAGGCTATTCGCATTCGAAAATCTTT
GGGCGGTGGAATCAGACAGGCGGGATTTTTGGCGGCGGCTGGTTTATACG
CCCTCGAACATGGTCACATATGGATACAACGGGACCATTCAAATGCGAGA
ATGTTAGCAGAAGGAATACAAGAGTTGAACTTTCATGATTTGATTAAAGT
TGATCTATCGAAAGTCAAAACGAATTTAGTTTTTACTGAAACGCCACCAG
GAAAATCATACGAAATTCAAGACCGTTTGATAGAGAAAGGAATACTTTCC
ATTGCATTTTCGGACACCAAGTTAAGGTTTGTTTTACACCATGATGTGGG
CGAAAGTGACGTTCATTATGCCCTTGATAAACTGAACGAAGTTTTACAAG
AAAtgtcttaaaaactttacagtATCATGTATATTAATATTTAGTATCAA
TTTTTTACTGAATTTTTAATTTATGATATCAATCATCGAAAGGTCTCATA
aaatctgtaaattttcaagatAAAGCCAATTGGTCTATTTGAGCCAACTC
GAATAAAAGACGTTCGATATACTTTGAATTTGTATTCTCTCGGTTCTCTA
ATAGAGTCTACTACTCTAATAGGGGTCTAGGATAAGCGGAAGGGAATTGT
TTGGAATAAGAATAtcttttataaattttctttctagGTTGACCCTATTT
TTGATGAAACTCTACTGGACTTTGTCCCGGGTAGAAAATTGTTAACAGAT
TTAGGCAAAATAAGAAGCCGGACGTTCATCAGAGACAAGAGAGTCTTGCT
GGGTCATTAAACAAATAACACGAATTTGAATTTTCCTAAATGGTAACAAA
GATAAAATTGTCTTTTCAGTGAAATACATAGATTTATTGACTATTTACAT
TTATAATAATAAAAGGTATAGATAGATTGTGCTTTACTTTTAATGATAAT
AAAAGATtagaatataaaatatacaTTTCGATAAGCACCACATTCAGAAA
GTTGACAAAcctcaaattcaaaattcaccAACATATGTCTCACTCTAGAA
TGGGCTCTTCTAGAGAATAAATACgttcatgggggtggaggatatattat
gtTTTTCATGaataaccccctggacacgggttatacccctggacaaacat
caaatcaactccgtggacacaaaaaattaccccttgacattggaatttac
cccctggacatagcaattttttggtatttttttcaatacccctggacaat
tcatcctccgacccccatgaacggattttttctggaagagcccaatcgtC
ATGTGACTTTGTTAGAAAAGACACTAAAAAGAGACTGTCTCCGATAGCTT
TTCAAAGGTGTATTGGATTTTATAAAAATCGCTGCTTACTTATTAGTTTC
ACACCTGTGTCTAAGACCAGAGACAAAACCCTATTGGAAAAATCGTCCTG
AGCAACAAACTTCTTACACGTGAACAACGTCGAATTTTCATGCATCGCTA
CTCGAAGCAATAAAATCATTGGGCGAATCTCCGACTAATAGGCTGTAACC
GATTTGATACAAAATGTGAAAGGTTTTTACCTCCTTTTTTCCCCCAAGAA
GACATTGGCTAAAAATTCTCACCGGGTCATTCAAGGACATTATCCGATAC
AGAGTGTATTCCACGATTcttcaaagttaaaaaaaaatcgcTCTTAAAAT
GGTGTTCTAGCCTGTTCTAGCAACTATGCGAAATAAATACAGTGTCTGTG
CGCATGTCTAAAAACTTCATTCCAAACCAAAGAAAAGGTCTTTAAAAGGA
CCTTCGCAAACATTAAAATACTTTCGGACAGAACCCTCCACACTCAACAT
CACATCATTCTTACCAACTATCTTTTCATCATACTGCAGGCGAGGATACG
AAAATTTGCGGAGAACTTTCC Run BLAST on NCBI transcript from alignment at sc0000389:167156..170491+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021537 ID=TCONS_00021537|Name=TCONS_00021537|organism=Clytia hemisphaerica|type=transcript|length=3336bp|location=Sequence derived from alignment at sc0000389:167156..170491+ (Clytia hemisphaerica)
TGTCAACCTACAATATAGCTAAAGGTATGCCTGTTCTTTTTGTAATTACT
TAAGCACTTAAGCCACTCTATAGTAAGGGAGCCccccttttgaaaaaata
ttcaaatgcaTTCTCCGAGAATTTGCCAAAATATTCCACTCATAAAATTG
ACGTGGGACGAGAAATATTGAGCTTGATCTCTTTAGTATCGCATTTTTGG
TTTCAATTATAGATGGTGTTTTCTTATTCCCGCACCCTCTCTTTCAAGCA
AATATCTTAGTGCAAGGTCCTTACGTTCGTTTTCGTTCGTTCTTGCTAAG
TAGCGGCACTATTAGTTGAAATTCTAGGGTTCGATTTGATAGAACTGTCA
TATTGGATGAGAACCTGAAATTATTTAATGTAACATAATTTTACATATCA
ACCATTTTTCGTTATTTTAGAAACATAAAAGGATGAATCGTTTTGCGAAG
CTAGCCCGTTTTTCGATGAAAAATTTACAGCATCGATGTTACGTCACATC
TAATATACGAACAGTCGACTTACGCTCAGACACTTTGACGCGGCCGAGCG
CTGAGATGAGGCGTGCTATGTTTGCAGCAGAAGTCGGAGATGACGTTTAT
AAAGAAGATGAAACTGTGAATGAGTTAGAGAGACTAGCTGCTCAGCTATT
TGGAATGGAAAAGGCTTTGTTTGTGCCGACTGGTAaggattgaaaatgaa
atagaattttatcaaaaatcattaaaattgaaGCTTATTCAGTTATTTTA
AAGtatctttatttttcctttttcacttAGATTTTTTGACATGGTCACTT
acctaaattttttgaaattgttctaTAGTATAACATATTTTCTATCTGGT
TGATTAAGACGTGGAAGTGTTGGGCTGCCATCTTTCTTGTTTTAGTGGCA
TGGAATGTATAGCAATAACTTTGAGtcagaaaataaatttatttccaTTA
GGTACCATGGGCAATCTTTTATGTTTAATGTCTCATTGTTATGGGCGTGG
CGAAGAGCTCATCATTGGATCGAACCAACACGTGTATTTGTATGAGCAAG
GACATTTCATGCGATTGGCTGGAATCGGCGCACGTGTTCTATCGAACGAA
CCAGATGGGACGATCAAACTAGAATCAATCAAACAAAACATAAGAGATGC
ATCCGATTTTCACCAATCAGAAACTAAGCTAATTTGTTTGGAGAACACTC
ACATGAATTGTGGTGGGATCCCTCTTACCAATGACTATTTGAAACAAGTT
GGCCAATTAGCACGTGAAAATGGGTTGCAATTACATATTGATGGCGCTAG
AGTGTTTAATGCAGCTGTTGCAACTAACCAACCTTTATCTGATATTTTGG
TAGAGGCTAACTCGGTTTCTATGTGTTTATCAAAAGGACTTGGGTGCCCT
ATTGGCTCAGTAATAGGTGGCAGTGAAGAGCTAGTGAATAAGGCTATTCG
CATTCGAAAATCTTTGGGCGGTGGAATCAGACAGGCGGGATTTTTGGCGG
CGGCTGGTTTATACGCCCTCGAACATGGTCACATATGGATACAACGGGAC
CATTCAAATGCGAGAATGTTAGCAGAAGGAATACAAGAGTTGAACTTTCA
TGATTTGATTAAAGTTGATCTATCGAAAGTCAAAACGAATTTAGTTTTTA
CTGAAACGCCACCAGGAAAATCATACGAAATTCAAGACCGTTTGATAGAG
AAAGGAATACTTTCCATTGCATTTTCGGACACCAAGTTAAGGTTTGTTTT
ACACCATGATGTGGGCGAAAGTGACGTTCATTATGCCCTTGATAAACTGA
ACGAAGTTTTACAAGAAAtgtcttaaaaactttacagtATCATGTATATT
AATATTTAGTATCAATTTTTTACTGAATTTTTAATTTATGATATCAATCA
TCGAAAGGTCTCATAaaatctgtaaattttcaagatAAAGCCAATTGGTC
TATTTGAGCCAACTCGAATAAAAGACGTTCGATATACTTTGAATTTGTAT
TCTCTCGGTTCTCTAATAGAGTCTACTACTCTAATAGGGGTCTAGGATAA
GCGGAAGGGAATTGTTTGGAATAAGAATAtcttttataaattttctttct
agGTTGACCCTATTTTTGATGAAACTCTACTGGACTTTGTCCCGGGTAGA
AAATTGTTAACAGATTTAGGCAAAATAAGAAGCCGGACGTTCATCAGAGA
CAAGAGAGTCTTGCTGGGTCATTAAACAAATAACACGAATTTGAATTTTC
CTAAATGGTAACAAAGATAAAATTGTCTTTTCAGTGAAATACATAGATTT
ATTGACTATTTACATTTATAATAATAAAAGGTATAGATAGATTGTGCTTT
ACTTTTAATGATAATAAAAGATtagaatataaaatatacaTTTCGATAAG
CACCACATTCAGAAAGTTGACAAAcctcaaattcaaaattcaccAACATA
TGTCTCACTCTAGAATGGGCTCTTCTAGAGAATAAATACgttcatggggg
tggaggatatattatgtTTTTCATGaataaccccctggacacgggttata
cccctggacaaacatcaaatcaactccgtggacacaaaaaattacccctt
gacattggaatttaccccctggacatagcaattttttggtatttttttca
atacccctggacaattcatcctccgacccccatgaacggattttttctgg
aagagcccaatcgtCATGTGACTTTGTTAGAAAAGACACTAAAAAGAGAC
TGTCTCCGATAGCTTTTCAAAGGTGTATTGGATTTTATAAAAATCGCTGC
TTACTTATTAGTTTCACACCTGTGTCTAAGACCAGAGACAAAACCCTATT
GGAAAAATCGTCCTGAGCAACAAACTTCTTACACGTGAACAACGTCGAAT
TTTCATGCATCGCTACTCGAAGCAATAAAATCATTGGGCGAATCTCCGAC
TAATAGGCTGTAACCGATTTGATACAAAATGTGAAAGGTTTTTACCTCCT
TTTTTCCCCCAAGAAGACATTGGCTAAAAATTCTCACCGGGTCATTCAAG
GACATTATCCGATACAGAGTGTATTCCACGATTcttcaaagttaaaaaaa
aatcgcTCTTAAAATGGTGTTCTAGCCTGTTCTAGCAACTATGCGAAATA
AATACAGTGTCTGTGCGCATGTCTAAAAACTTCATTCCAAACCAAAGAAA
AGGTCTTTAAAAGGACCTTCGCAAACATTAAAATACTTTCGGACAGAACC
CTCCACACTCAACATCACATCATTCTTACCAACTATCTTTTCATCATACT
GCAGGCGAGGATACGAAAATTTGCGGAGAACTTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021537-exon-sc0000389-1491911889:167156..167179 | TCONS_00021537-exon-sc0000389-1491911889:167156..167179 | Clytia hemisphaerica | exon |
| TCONS_00021537-exon-sc0000389-1510915933:167156..167179 | TCONS_00021537-exon-sc0000389-1510915933:167156..167179 | Clytia hemisphaerica | exon |
| TCONS_00021537-exon-sc0000389-1575043694:167156..167179 | TCONS_00021537-exon-sc0000389-1575043694:167156..167179 | Clytia hemisphaerica | exon |
| TCONS_00021537-exon-sc0000389-1491911889:167576..167837 | TCONS_00021537-exon-sc0000389-1491911889:167576..167837 | Clytia hemisphaerica | exon |
| TCONS_00021537-exon-sc0000389-1510915933:167576..167837 | TCONS_00021537-exon-sc0000389-1510915933:167576..167837 | Clytia hemisphaerica | exon |
| TCONS_00021537-exon-sc0000389-1575043694:167576..167837 | TCONS_00021537-exon-sc0000389-1575043694:167576..167837 | Clytia hemisphaerica | exon |
| TCONS_00021537-exon-sc0000389-1491911889:168107..170491 | TCONS_00021537-exon-sc0000389-1491911889:168107..170491 | Clytia hemisphaerica | exon |
| TCONS_00021537-exon-sc0000389-1510915933:168107..170491 | TCONS_00021537-exon-sc0000389-1510915933:168107..170491 | Clytia hemisphaerica | exon |
| TCONS_00021537-exon-sc0000389-1575043694:168107..170491 | TCONS_00021537-exon-sc0000389-1575043694:168107..170491 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000389 | supercontig | sc0000389:167156..170491 + |
Blast
The following BLAST results are available for this feature:
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