TCONS_00021530 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00021530
Unique Name	TCONS_00021530
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1088

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000389:154785..159009+

transcript sequence

>TCONS_00021530 ID=TCONS_00021530|Name=TCONS_00021530|organism=Clytia hemisphaerica|type=transcript|length=1088bp
GAATACAGTTCCCTGTTCCCTGTAATTTCTATCTGGAAATAATATattga
aagtgattttttcatttatgaaCAAATAGTATTCTCTTTAAATATGCATG
AAAAGAAAAGAGTTGGAATAGTTGGTTACGGCCATATAgGTCAATACATT
TTTGACGAAGTTCAAAAAAGTGAAGACTTGTGTGTTGACTTTGTGTGGAA
TAGATCCTTTGACAAAATCAAACATCTTCCAAAAGAAGCTCAACTTGAAA
ATCTTGATGAATTTAGAACGAGAAAGGTTGACATCATCTTAGAAGTTGCA
CATATCACAACAACTCAAAAATATGGAGAACAATTTTTAGAACATGCAAA
TTTTATGATAGGATCTCCTACTGCTTTGGCTGATGAGGATCTTGAAACCA
GACTGAGAAAGAAATCCATAGAAACTGGTTATGGATTGTTTGTTCCTGCT
GGTGCATTTTGGGGTGGTGAAGATGTACAAAAGATGGCTGATCAAGGGTC
ATTGAAGGGTTTGAGAGTGACAATGAAAAAACATCCATCTTGTTTCAAAG
TCCTTGGCAAAGTAGCTGAAAGGAATGAAAAGGTTGGAGATGAACCTGTT
GTATTATACGAAGGTCCAGTTCGAAAGCTTTGTCCGTTGGCACCTGCTAA
TGTAAACACGATGGCCTGTGCTGCACTAGCGGCACATAATCTAGGTTTTG
ATAAAGTTCAAGGATGTCTTGTAGCTGATCGAAGtttgaaaTGCCACATA
GTAGAGATAGAAGTGACAGGACCTCCTTTAGGTGATGATGGTGAAGAATT
CACAGTCAAAACAGTTCGAACGAATCCAAGCAAAACTGGAGTTGTTACTG
GTAACGCAACGTATGCATCCTTCTTCCAAAGTCTAAGGCGTGCATATGGA
AAAGGTGGTGGTATCCATttatgctgattcagcaaaaacGAAATTCTAGA
GTATTTTTATAGCTTTATTGTAGTTAGGTAGCATAGATTTATTATCAAGT
TATTATTAATTATCATTTATTTTTGTATACCAATTAATAGGAgattagtt
tttttataaaaatcatctATCACAAATTAAAGAGTAAT

Run BLAST on NCBI

transcript from alignment at sc0000389:154785..159009+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00021530 ID=TCONS_00021530|Name=TCONS_00021530|organism=Clytia hemisphaerica|type=transcript|length=4225bp|location=Sequence derived from alignment at sc0000389:154785..159009+ (Clytia hemisphaerica)
GAATACAGTTCCCTGTTCCCTGTAATTTCTATCTGGAAATAATATattga
aagtgattttttcatttatgaaCAAATAGTATTCTCTTTAAATATGCATG
AAAAGAAAAGAGTTGGAATAGTTGGTTACGGCCATATAggtgagtttttt
caaaatgtttttccagaaataaaatttttgctcttttttttccttaaaat
gtaaTCTTTATATTCTCCTCCTTAGTTGAACAACCTTCATCCGTAGCCTT
TGACCTTTCACGTGCCCGCTCATCACCTATGTATATCGGTCTCTCCTGTA
GCCTTTAattgatatataaaaatgattaattctaaataaattttatagGT
TTTACTTTTAAAAGGCTTCTATAATTTTTCATTAAGGTCAATACATTTTT
GACGAAGTTCAAAAAAGTGAAGACTTGTGTGTTGACTTTGTGTGGAATAG
ATCCTTTGACAAAATCAAACATCTTCCAAAAGAAGCTCAACTTGAAAATC
TTGATGAATTTAGAACGAGGTGAAAATACTTTTCTTTCTGATCTATCTAT
GATTTTTCGGAAGGACTAAATGAATCTTTCTAATCCTTTAAACCCAGAGG
AAACGAAATATGCTGTCAAAACCACTTAAAAATTGGCTAAACTTTTTGAT
GGAAAACACTTTGAAactattgaaaaatatattttagaaACCTTCTCATT
CTTGTTTCATATTCTAATGTTTCTTCACTAGAAAGGTTGACATCATCTTA
GAAGTTGCACATATCACAACAACTCAAAAATATGGAGAACAATTTTTAGA
ACATGCAAATTTTATGGTAAAGTCTTCATTATTGTGAGCTTTTTNTTTTT
CATTAAGGTCAATACATTTTTGACGAAGTTCAAAAAAGTGAAGACTTGTG
TGTTGACTTTGTGTGGAATAGATCCTTTGACAAAATCAAACATCTTCCAA
AAGAAGCTCAACTTGAAAATCTTGATGAATTTAGAACGAGGTGAAAATAC
TTTTCTTTCTGATCTATCTATGATTTTTCGGAAGGACTAAATGAATCTTT
CTAATCCTTTAAACCCAGAGGAAACGAAATATGCTGTCAAAACCACTTAA
AAATTGGCTAAACTTTTTGATGGAAAACACTTTGAAactattgaaaaata
tattttagaaACCTTCTCATTCTTGTTTCATATTCTAATGTTTCTTCACT
AGAAAGGTTGACATCATCTTAGAAGTTGCACATATCACAACAACTCAAAA
ATATGGAGAACAATTTTTAGAACATGCAAATTTTATGGTAAAGTCTTCAT
TCTTGTGAGCTTTTTATGAGATGTCTTCTGTCTTTAAGATGTGGAAGATC
TTGAGCAATGTTTTAGTTTCAAAAACTCAAATCTTATATTTATAATGTCT
GTTTGGTTTCTTCTGGCAGTGAATGAAGTTCAATGCAATtgattgtgaaa
aaaaaatgtcaacaaaaaaaaacctttcattcacaaatttgacaaattcg
CTTTCAACATGTCGAAAGATAAATTGACTCTCAGTATCTCTCTTTCATCA
GATAGGATCTCCTACTGCTTTGGCTGATGAGGATCTTGAAACCAGACTGA
GAAAGAAATCCATAGAAACTGGTTATGGATTGTTTGTTCCTGCTGGTGCA
TTTTGGGGTGGTGAAGATGTACAAAAGATGGCTGATCAAGGGTCATTGAA
GGTGATCTTAGACAAAATTAAGTCTCTAAAAAGACGAGACAATATTTATT
TCTATGAGGATGGATGAGCTTTTATAAAGAGtaaaaaataagtatttttG
ATACACCTATCAACCCAGTCCGCTTTTTAGGGGACTTGTAATAAATTTAC
GAGGAGGATTTGAGGTGAACGCCATTTTTTAGGCCATATCTAAATCAAAC
CAACAAACTCCTGCCAAAACTCAGTGATATTTTACCAAGTCTCTGTGGTG
GGGTGCAAactatttttagcatttgaaTTGCTTAACTATATTGATGTTAC
TTTATTGCTTCAATGCAAGGGTATCTTTCAATCTTATATGTTTGACAATT
GAACTCCTACACTTATATTTTCAATACTGTTGTTTAGAAGAAGTCtcctt
gttttttttgtcaccAGGTTCCTCAAAAGCTGACCACGCCGCTAAGGGTT
GATAGATGGTGTATAGCGTTTAAAAAAAGGGTTGATATAATTTAGAATCT
GCGGTAGATGTTGAAGGGTTAATAAATTGATGCGCCTTTTAGAGTTGAGG
TAAATCTTAACATAATATGTTTTCATTTCCAGGGTTTGAGAGTGACAATG
AAAAAACATCCATCTTGTTTCAAAGTCCTTGGCAAAGTAGCTGAAAGGAA
TGAAAAGGTTGGAGATGAACCTGTTGTATTATACGAAGGTTAGAtaggtc
tttctttggtttaTCTATACTACTTATATGACTTGCTCAAAATCCTCAAC
GTATTAATTCTAGAGTAAAATTAACCAAATTTTGTACAATCTTTTGCTTA
CATTTAGGTCCAGTTCGAAAGCTTTGTCCGTTGGCACCTGCTAATGTAAA
CACGATGGCCTGTGCTGCACTAGCGGCACATAATCTAGGTTTTGATAAAG
TTCAAGGATGTCTTGTAGCTGATCGAAGGTATACAGATCTTGAACGTGGA
TATCcaagctgcaaattattttcttattttgaagaTTCTGCTATTTACAG
CTTGGTCTACCTAGATGCTCTTAAACCCCTTCTGATATATTGGAATGTAA
ATTGCTTTAGAAGGACCTTAAGGTAGAGCAGAAACATCATAAATTTAAAC
aaagtttacagcctggatatcaaGGCTAAACAGATCATGAACGTGGTTCG
AATAAATATAATTGAATTGAGGTTTTTTTATCATTACCTTTGttatgaaa
atgaagaataagACTAAgatttatttttggaaattaaacACAATCATCAG
CCAAATAAAATTATTGATCATAAATTTAGTGATAATTGTtccagtgtttt
ttttttcagtttgaaaTGCCACATAGTAGAGATAGAAGTGACAGGACCTC
CTTTAGGTGATGATGGTGAAGAATTCACAGTCAAAACAGTTCGAACGAAT
CCAAGCAAAACTGGAGTTGTTACTGGTAACGCAACGTATGCATCCTTCTT
CCAAAGTCTAAGGCGTaagtctttttttccaaaactaTTTCTGTTCAATA
CAAAATCAGTACAGGTTATCTTGCCAATTCGAACTCAAATGGGAACttta
atttgttcgagttaaagagagattcgaattatagaaagtatttttacgAG
AACTGATAATTAGTTCGAATTGAGAACgattcaaataatagaagttcaaa
tttgggaaatcctttttttttttttttttgggtgtgttttttttttgggg
ggggggcttttgTATCCAAGTTTAGGTATTATCAcattttttttgggttt
ttttttttttttggggggggggcttttgTATCCAAGTTTAGGTATTATCA
cattttttttgggtttttttttttttttggggggggggcttttgTATCCA
AGTTTAGGTATTATCAcattttttttgggtttttttttttttttgggggg
ggggcttttgTATCCAAGTTTAGGTATTATCAcattttttttgggttttt
ttttttttttggggggggggcttttgTATCCAAGTTTAGGTATTATCAca
ttttttttgggtttttttttttttttggggggggggcttttgTATCCAAG
TTTAGGTATTATCAcattttttttgggtttttttttttttttgggggggg
ggcttttgTATCCAAGTTTAGGTATTATCAcattttttttgggttttttt
ttttttttgggggggggggcttttgtATCCAAGTTTAGGTATTATCACat
tattttcgtgtttttttaaGTCTGGTGGTTTAACAAAATCTTCcagggaa
aatttttattgaaaattttaacaaaatctttcaggggaaattgtttttga
aagttaCTTTATCACTTTCTTTTTAGGTGCATATGGAAAAGGTGGTGGTA
TCCATttatgctgattcagcaaaaacGAAATTCTAGAGTATTTTTATAGC
TTTATTGTAGTTAGGTAGCATAGATTTATTATCAAGTTATTATTAATTAT
CATTTATTTTTGTATACCAATTAATAGGAgattagtttttttataaaaat
catctATCACAAATTAAAGAGTAAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_012074	XLOC_012074	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000389	supercontig	sc0000389:154785..159009 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.4258	4.61414	9.45725e-05	8.12824e-05	0.00124331	5.39792	2.61626	5.1383	7.31543	0.000755352	4.29826	0.000223923	3.8958	1.83084e-05	7.66142e-05	8.84574e-05	0.000406153	0.000209559	0.000326983	9.34514e-05	0.000154545	3.73732	1.57179	0.000223165	5.41968	6.65912	2.68897	16.7021	1.02223	0.00223786

Blast

[Close]

BLAST of TCONS_00021530 vs. Swiss-Prot (Human)
Match: ASPD (Putative L-aspartate dehydrogenase OS=Homo sapiens GN=ASPDH PE=1 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 1.315e-66
Identity = 126/279 (45.16%), Postives = 169/279 (60.57%), Query Frame = 1

Query:  109 RVGIVGYGHIGQYIFDEV--QKSE-DLCVDFVWNRSFDKIK-HLPKEAQLENLDEFRTRKVDIILEVAHITTTQKYGEQFLEHANFMIGSPTALADEDLETRLRKKSIETGYGLFVPAGAFWGGEDVQKMADQGSLKGLRVTMKKHPSCFKVLGKVAERNEKVGDEPVVLYEGPVRKLCPLAPANVNTMACAALAAHNLGFDKVQGCLVADRSLK-CHIVEIEVTGPPLGDDGEEFTVKTVRTNPSKTGVVTGNATYASFFQSLRRA--YGKGGGIHLC 924
            RVG+VGYG +GQ +   +  Q  E  L + FVWNR   ++   +P   QL+NL     R+ D+++EVAH     + G Q L HAN ++GSP+AL+D+  E +L + S    + +FV  GA WG ED++++   G L+ LRVTM  HP  F++ G +A  +        VLYEGPVR LCP AP N NTMA AALAA +LGFD V G LVAD SL   H+V++E++G P G  G  F V T R NP++ G VTG+AT  +F+QSL          GIHLC
Sbjct:    8 RVGVVGYGRLGQSLVSRLLAQGPELGLELVFVWNRDPGRMAGSVPPSLQLQNLAALGERRPDLVVEVAHPKIIHESGAQILRHANLLVGSPSALSDQTTERQLLEASQHWDHAVFVARGALWGAEDIRRLDAAGGLRSLRVTMATHPDGFRLEGPLAAAHSP--GPCTVLYEGPVRGLCPFAPRNSNTMAAAALAAPSLGFDGVIGVLVADTSLTDMHVVDVELSG-PRGPTGRSFAVHTRRENPAEPGAVTGSATVTAFWQSLLACCQLPSRPGIHLC 283

The following BLAST results are available for this feature:

BLAST of TCONS_00021530 vs. Swiss-Prot (Human)

BLAST of TCONS_00021530 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ASPD	1.315e-66	45.16	Putative L-aspartate dehydrogenase OS=Homo sapiens...	[more]

You are here

TCONS_00021530 (transcript) - C. hemisphaerica