|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021526 ID=TCONS_00021526|Name=TCONS_00021526|organism=Clytia hemisphaerica|type=transcript|length=1679bp
TTATATTTTGtattcaaaagaattttgttaAAGATctctatttacaaaaa
aaagtcTCTTATCAGATACATTATTCcgacaataaaaaataaataaaaaa
ttattccgTTTATTCAAAAACCATTTTAGGGATAATTACCCTAAAGATAA
ATTCTCCTTTTAGctattcaatattcaaaagtTGTAATTCCCGTAAGAGT
CACAATAATAATTAACTTGTCTAGTAGAGCGGCCATTGGTTACTGAAtta
tcaaagttttcaaaaatccaaGCGATTTTAAAAGGGAAATGAATTAAAGA
TAATATTTAGTGAAGTGACTCTAGCCCTTGGATGAAATACCTAACCAGGC
TATGAAATACCCTTATATTGTAAGCAAATGACGACCCATTACAAATTTTC
TCAGTTTGTGACAGGAAGGCGATACTATAAGGcggcagaaataaaaagct
tgaaaggatactaaaatttcaaatctttatAAACTCAACTTATCACTTTC
GATAAAACGTTTTTCCCCCAGTAGAGACCCTCGCTTATTTGATCTTCTAT
TATTCGTCGCCGTTAAGGAAAGACCTctgaaaatactttctataattcga
atctctctttaattcgatcaaATAAGGTTTTTCTGTTCaagctcgaatta
gagagagagtaaACTAGCTGGGAAAACAGAGGGCTAAAAATAATGattgt
tataaaaaattaacgTTTAAAACACgcttctatctatctatatgtatttt
ctttcaaatttcattACTCCGTCTTCGATATAGTCAGGGTTACCgtactt
ataaaaaacgttttagCTTTAACTCAAAAAAATCCATTCACTGTACACGT
ATAACAACAAATAATAACAGCTAGCCTCTGGACATTTCAACGATGTGAAC
TAGACCCACCTCCATATCTCGAGGTTCCAATATTATAGACTGAGAGTAGG
TTCGCGCTACTCGACGGTAGAGGCGCTTGCCCAAAAGGAGCAGGATGACC
AGTGTAAGGTTTTCTATCTAGTTCATGATGACGTGGCAAAATGCGGCTTG
ATTTTTCCATATCCATAAAGCTCTTTGTATAAGGACCACCCGGATGATCT
ATTGTCCGTAGTAAAGAAGGATGGCCGGAACTTCCAGAGTCCATGCGAGG
TGCGGGTGAAATACGTGGAGCGCGCGGCGACTTCGGTGCGCGACTCATGT
CCGGGTACATAGCACGAGAGCTACGATCCAAGTCTAAAAATAATGGTCTG
TTGTATGAAGCCCTGTCAAGGTCCATATGTGAAGGATATCGCATTCTCTC
TTTgtccattaaaaagtcttgcgTTTTCATATCCCCAAACATACGCGATG
GTTTGCTGTCGCGCGACGGCTTTTGATCGTGATGCGATTGTAAAataaga
gatttattttcaggTAATTTGACGTGTTTCGTGGATAATCTTTCACGATG
TGTTTGAGACATATCCATCAAAGATGATGGATCTAAACCACCATAATGAT
GTGATGGCGGTTTTGGGAGAAACGGATTACGTTCCGATTCCATGTTCCGT
GGCGGGAAACGGgaatctttttctttgtttcggTATGCAGTTGACATATG
GGATTGTAATGAGTGTTGTGAGTGTTGTGAGTGTTGTGGATGAGGGTTGA
TTCGCGATGGGTAATTCGTAGAGGTACCT Run BLAST on NCBI transcript from alignment at sc0000389:30789..32524+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021526 ID=TCONS_00021526|Name=TCONS_00021526|organism=Clytia hemisphaerica|type=transcript|length=1736bp|location=Sequence derived from alignment at sc0000389:30789..32524+ (Clytia hemisphaerica)
TTATATTTTGtattcaaaagaattttgttaAAGATctctatttacaaaaa
aaagtcTCTTATCAGATACATTATTCcgacaataaaaaataaataaaaaa
ttattccgTTTATTCAAAAACCATTTTAGGGATAATTACCCTAAAGATAA
ATTCTCCTTTTAGctattcaatattcaaaagtTGTAATTCCCGTAAGAGT
CACAATAATAATTAACTTGTCTAGTAGAGCGGCCATTGGTTACTGAAtta
tcaaagttttcaaaaatccaaGCGATTTTAAAAGGGAAATGAATTAAAGA
TAATATTTAGTGAAGTGACTCTAGCCCTTGGATGAAATACCTAACCAGGC
TATGAAATACCCTTATATTGTAAGCAAATGACGACCCATTACAAATTTTC
TCAGTTTGTGACAGGAAGGCGATACTATAAGGcggcagaaataaaaagct
tgaaaggatactaaaatttcaaatctttatAAACTCAACTTATCACTTTC
GATAAAACGTTTTTCCCCCAGTAGAGACCCTCGCTTATTTGATCTTCTAT
TATTCGTCGCCGTTAAGGAAAGACCTctgaaaatactttctataattcga
atctctctttaattcgatcaaATAAGGTTTTTCTGTTCaagctcgaatta
gagagagagtaaACTAGCTGGGAAAACAGAGGGCTAAAAATAATGattgt
tataaaaaattaacgTTTAAAACACgcttctatctatctatatgtatttt
ctttcaaatttcattACTCCGTCTTCGATATAGTCAGGGTTACCgtactt
ataaaaaacgttttagCTTTAACTCAAAAAAATCCATTCACTGTACACGT
ATAACAACAAATAATAACATCTAGCANAACTCAAAAAAATCCATTCACTG
TACACGTATAACAACAAATAATAACAGCTAGCCTCTGGACATTTCAACGA
TGTGAACTAGACCCACCTCCATATCTCGAGGTTCCAATATTATAGACTGA
GAGTAGGTTCGCGCTACTCGACGGTAGAGGCGCTTGCCCAAAAGGAGCAG
GATGACCAGTGTAAGGTTTTCTATCTAGTTCATGATGACGTGGCAAAATG
CGGCTTGATTTTTCCATATCCATAAAGCTCTTTGTATAAGGACCACCCGG
ATGATCTATTGTCCGTAGTAAAGAAGGATGGCCGGAACTTCCAGAGTCCA
TGCGAGGTGCGGGTGAAATACGTGGAGCGCGCGGCGACTTCGGTGCGCGA
CTCATGTCCGGGTACATAGCACGAGAGCTACGATCCAAGTCTAAAAATAA
TGGTCTGTTGTATGAAGCCCTGTCAAGGTCCATATGTGAAGGATATCGCA
TTCTCTCTTTgtccattaaaaagtcttgcgTTTTCATATCCCCAAACATA
CGCGATGGTTTGCTGTCGCGCGACGGCTTTTGATCGTGATGCGATTGTAA
AataagagatttattttcaggTAATTTGACGTGTTTCGTGGATAATCTTT
CACGATGTGTTTGAGACATATCCATCAAAGATGATGGATCTAAACCACCA
TAATGATGTGATGGCGGTTTTGGGAGAAACGGATTACGTTCCGATTCCAT
GTTCCGTGGCGGGAAACGGgaatctttttctttgtttcggTATGCAGTTG
ACATATGGGATTGTAATGAGTGTTGTGAGTGTTGTGAGTGTTGTGGATGA
GGGTTGATTCGCGATGGGTAATTCGTAGAGGTACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021526-exon-sc0000389-1491911889:30789..31656 | TCONS_00021526-exon-sc0000389-1491911889:30789..31656 | Clytia hemisphaerica | exon |
| TCONS_00021526-exon-sc0000389-1510915933:30789..31656 | TCONS_00021526-exon-sc0000389-1510915933:30789..31656 | Clytia hemisphaerica | exon |
| TCONS_00021526-exon-sc0000389-1575043694:30789..31656 | TCONS_00021526-exon-sc0000389-1575043694:30789..31656 | Clytia hemisphaerica | exon |
| TCONS_00021526-exon-sc0000389-1491911889:31714..32524 | TCONS_00021526-exon-sc0000389-1491911889:31714..32524 | Clytia hemisphaerica | exon |
| TCONS_00021526-exon-sc0000389-1510915933:31714..32524 | TCONS_00021526-exon-sc0000389-1510915933:31714..32524 | Clytia hemisphaerica | exon |
| TCONS_00021526-exon-sc0000389-1575043694:31714..32524 | TCONS_00021526-exon-sc0000389-1575043694:31714..32524 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000389 | supercontig | sc0000389:30789..32524 + |
Blast
The following BLAST results are available for this feature:
|
