TCONS_00021525 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021525
Unique NameTCONS_00021525
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length457

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021525 ID=TCONS_00021525|Name=TCONS_00021525|organism=Clytia hemisphaerica|type=transcript|length=457bp
CTTCTTGAGCACTAAAGTCTCTTTCACCGACAGATTTGATAAtcagtttt
cgaaaaatattaccAGAAGTCTCCTTTCCTGAAAGATTACCAATGACAGA
TGTAAACGCTTCTTTAACAACATCAGATATANGCACTAAAGTCTCTTTCA
CCGACAGATTTGATAAtcagttttcgaaaaatattaccAGAAGTCTCCTT
TCCTGAAAGATTACCAATGACAGATGTAAACGCTTCTTTTGCAACATCAG
ATATCTTTTCTGCTTTTGATGCATACTTAGCAATATAATTCAAGCAAGCA
TTGTGATCAAGGATAATTTGTATATCACAGTTAGCTCTCCATGATTGTAA
TTGAAGCTGTTGATGCCTATTCATTCTAGGATCGTTTCTTTTCAGAACAA
TGTTTGGAACATACTTCTCACCacctcctttcaattttactttttcaaag
tttaaat
Run BLAST on NCBI

protein sequence of TCONS_00021525-protein

>TCONS_00021525-protein ID=TCONS_00021525-protein|Name=TCONS_00021525-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
LNFEKVKLKGGGEKYVPNIVLKRNDPRMNRHQQLQLQSWRANCDIQIILD
HNACLNYIAKYASKAEKISDVAKEAFTSVIGNLSGKETSGNIFRKLIIKS
VGERDFSXYI
Run BLAST on NCBI

transcript from alignment at sc0000388:281355..281811

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021525 ID=TCONS_00021525|Name=TCONS_00021525|organism=Clytia hemisphaerica|type=transcript|length=457bp|location=Sequence derived from alignment at sc0000388:281355..281811 (Clytia hemisphaerica)
atttaaactttgaaaaagtaaaattgaaaggaggtGGTGAGAAGTATGTT
CCAAACATTGTTCTGAAAAGAAACGATCCTAGAATGAATAGGCATCAACA
GCTTCAATTACAATCATGGAGAGCTAACTGTGATATACAAATTATCCTTG
ATCACAATGCTTGCTTGAATTATATTGCTAAGTATGCATCAAAAGCAGAA
AAGATATCTGATGTTGCAAAAGAAGCGTTTACATCTGTCATTGGTAATCT
TTCAGGAAAGGAGACTTCTggtaatatttttcgaaaactgaTTATCAAAT
CTGTCGGTGAAAGAGACTTTAGTGCNTATATCTGATGTTGTTAAAGAAGC
GTTTACATCTGTCATTGGTAATCTTTCAGGAAAGGAGACTTCTggtaata
tttttcgaaaactgaTTATCAAATCTGTCGGTGAAAGAGACTTTAGTGCT
CAAGAAG

Coding sequence (CDS) from alignment at sc0000388:281355..281811

>TCONS_00021525 ID=TCONS_00021525|Name=TCONS_00021525|organism=Clytia hemisphaerica|type=CDS|length=333bp|location=Sequence derived from alignment at sc0000388:281355..281811 (Clytia hemisphaerica)
ttaaactttgaaaaagtaaaattgaaaggaggtGGTGAGAAGTATGTTCC
AAACATTGTTCTGAAAAGAAACGATCCTAGAATGAATAGGCATCAACAGC
TTCAATTACAATCATGGAGAGCTAACTGTGATATACAAATTATCCTTGAT
CACAATGCTTGCTTGAATTATATTGCTAAGTATGCATCAAAAGCAGAAAA
GATATCTGATGTTGCAAAAGAAGCGTTTACATCTGTCATTGGTAATCTTT
CAGGAAAGGAGACTTCTggtaatatttttcgaaaactgaTTATCAAATCT
GTCGGTGAAAGAGACTTTAGTGCNTATATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012071XLOC_012071Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021525-proteinTCONS_00021525-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021525-exon-sc0000388-1491911889:281355..281811TCONS_00021525-exon-sc0000388-1491911889:281355..281811Clytia hemisphaericaexon
TCONS_00021525-exon-sc0000388-1510915933:281355..281811TCONS_00021525-exon-sc0000388-1510915933:281355..281811Clytia hemisphaericaexon
TCONS_00021525-exon-sc0000388-1575043694:281355..281811TCONS_00021525-exon-sc0000388-1575043694:281355..281811Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000388supercontigsc0000388:281355..281811 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.63675	2.57075	1.45777	0.633868	1.35043	0.914679	0.18392	0	0.12055	1.27072	0.869606	2.26111	0.190283	1.58089	0.406158	0.348696	0	0.110072	0	0.954789	0.829885	3.53989	0.492074	0.673424	0.614369	0.54831	1.76542	0.837378	1.13345	1.45595
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021525 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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