TCONS_00021523 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021523
Unique NameTCONS_00021523
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length231

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021523 ID=TCONS_00021523|Name=TCONS_00021523|organism=Clytia hemisphaerica|type=transcript|length=231bp
AGCTATTTAGAATTAAAGTGTGTCTGTCAGTGTGTGGGTGTACGTGGGTG
CATGTGCAGATGTCGGTCGTCACCTGGATGCATGCTCAGGACCTGGGGGT
CGgctgattttgctaaaatttgtaATTTAAGCTCCTTGGGTGAGTCCTTG
GGGCATTCTTCATTCTTCTTGGGAGTTGGCTGATTTTGCTAAAGTCTTGT
ACATGTAGTTCCTTGAGTGAGTCCTTGGGNN
Run BLAST on NCBI

transcript from alignment at sc0000388:252568..252798

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021523 ID=TCONS_00021523|Name=TCONS_00021523|organism=Clytia hemisphaerica|type=transcript|length=231bp|location=Sequence derived from alignment at sc0000388:252568..252798 (Clytia hemisphaerica)
NNCCCAAGGACTCACTCAAGGAACTACATGTACAAGACTTTAGCAAAATC
AGCCAACTCCCAAGAAGAATGAAGAATGCCCCAAGGACTCACCCAAGGAG
CTTAAATtacaaattttagcaaaatcagcCGACCCCCAGGTCCTGAGCAT
GCATCCAGGTGACGACCGACATCTGCACATGCACCCACGTACACCCACAC
ACTGACAGACACACTTTAATTCTAAATAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012069XLOC_012069Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021523-exon-sc0000388-1491911889:252568..252798TCONS_00021523-exon-sc0000388-1491911889:252568..252798Clytia hemisphaericaexon
TCONS_00021523-exon-sc0000388-1510915933:252568..252798TCONS_00021523-exon-sc0000388-1510915933:252568..252798Clytia hemisphaericaexon
TCONS_00021523-exon-sc0000388-1575043694:252568..252798TCONS_00021523-exon-sc0000388-1575043694:252568..252798Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000388supercontigsc0000388:252568..252798 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
25.0348	26.2819	10.3233	12.8333	86.9671	73.2723	60.5709	93.9003	13.4643	62.5575	43.8375	11.7323	25.7072	22.4696	30.544	67.207	63.6871	40.8068	26.6574	21.8106	25.3537	27.4141	26.3009	50.5568	14.4048	41.9698	37.7222	58.6387	79.9564	66.3775
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021523 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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