TCONS_00021511 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00021511
Unique Name	TCONS_00021511
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1067

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000388:213494..219402-

transcript sequence

>TCONS_00021511 ID=TCONS_00021511|Name=TCONS_00021511|organism=Clytia hemisphaerica|type=transcript|length=1067bp
GTTTTGAATTGTGACATGACAACGCATTTCATTAATATTGATTAATCAAC
ATTTGTATAATTGAATCTAAACCTAAAGATATTCATGAATAACCATTGCA
tcagttttatttttgtttaaaaagaggCTTAAGAATTGATACAATAAGAA
ATTCTAGTTCCTTCAGAtaggaaaaaaatttgaaatgagaTTGCATGTGA
AGGAATTATGTTTCCTTCTAATTTTGGCAATTCCTAGCTTTGAAGCTGCC
AATAAATGTCAGAAAAGACAGCCGGAGAATTTCCATGGTATGAAACCAAT
TATTTACATCAAGGaAAAGAAAGCATTTTCTGGTGGACTTATCAAATACA
TTCCTGTCCAGTCTCCAGAATGGGAACTAACGCTGAGCATCAAATTCAAT
AGTTTCATAACAAACCTATGGAAAGGTATTCTCCGCTTTACTGACGGAAG
TGCACACTTAAATCATGGAAACCGAGTCCCGCTCTTGGTCATGAAAGGTA
GTATGCTTCAGATTTCAAGCTCAGTCAACAATAATTGGGACCATTATTAC
TTGAAATACAACCTTGTCCTAAATACTGTTTATAACATCAAAGTTGCTCA
ATATTATATCTCCAATGGTCGTTACAGATATTTTATAGAGATTGATGGAA
TAGAAGTTAAATCTACTGTCAACACAAACCCAATGCAATTTTACAATGTT
GCAGTTTATATATTGCAAAGTTCAGGGGCAGATTGCGACGTCACCAATTT
AAAATTCgtcaattttttgtaaattttcttattCAAATCTAACAGCCTGT
AGGTGTAAAGAAAACAGGGGATGtatgttacacgtttttttataagaaca
ctttataaaaatgtttatgatgaaaatggccaaaaaattaagaattttgc
catcgtgaaaattttcaattttgtttaagAATATATTTCTGCTTTTATAA
TTTTCTGTTCTTTACTTTGTACTTTACAATTACATAGCTGTTTAAtacat
tacatgttttttttataagcatataaaaatccgaaaacaggctcagaaaT
GCTTAGGTTGAAAGTTT

Run BLAST on NCBI

transcript from alignment at sc0000388:213494..219402-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00021511 ID=TCONS_00021511|Name=TCONS_00021511|organism=Clytia hemisphaerica|type=transcript|length=5909bp|location=Sequence derived from alignment at sc0000388:213494..219402- (Clytia hemisphaerica)
GTTTTGAATTGTGACATGACAACGCATTTCATTAATATTGATTAATCAAC
ATTTGTATAATTGAATCTAAACCTAAAGATATTCATGAATAACCATTGCA
TCAGTTTTATTTTTGTTTAAAAAGAGGCTTAAGAATTGATACAATAAGAA
ATTCTAGTTCCTTCAGATAGGAAAAAAATTTGAAATGAGATTGCATGTGA
AGGAATTATGTTTCCTTCTAATTTTGGCAATTCCTAGCTTTGAAGCTGCC
AATAAATGTCAGGTAAGTTGAACGAACCCCTCTCTCAGTGATTCGGCCGC
TTGAAATTCTTTCATGTCCCTTATAGCCAACTGAGAGTTCATAATAAAAC
AAAATTTCAAAATTTACTGATAACGGAGCTGTTTTTTTAATTAGGACTCG
AAAATATTTGTTTTCATAATCATTTAATAATCTAGTGAAAGAAATACCTA
GAATCTAGCANACTCGAAAATATTTATTTTTATAATACCTAGAATCACAA
AGTGTACAAGAAAATTCGAAAAGAATTGAGCGAAATATTGAAAAATAAAC
TACAGTACCAGGCAATTCAAGTGTATTGTAGATTTTATTTCAATCAATTT
TTTTGTTAATCTCATAACAGATCATACAGCATATACCACGCTCTGCACTT
AAAGGACATTGCGCATGTGACGATCTGACCTATTTTGTTCAGACAAAGCA
ATCAACACCGCGTTATTGTTGTTTTTTTGCTTTAAAACGAAGGCGAAAGC
TATTCTGTCTATTGTTTCTATTCCATTGAAGTAATATTACCATAATTGAT
AGTTAAGTAATTACTGTCAGGCTCGTAGGAATCATTTTCATTTTGAGGGG
GCAAAGTGAGAAATATAAACCGAGGGCCAGCCATCCATGGTTTGGCCAGA
GGGAGAAAATTCCGCAATTTAAGGTGTCTATATTGCTGAAAAACGCATCT
TATTAAAGGATTATGTTCAAAATGAAGCCATTAATACAAGATTTTTCAAA
GCTACCAACTTTTTTTTTTTCGAAATGCCCCTGTGCCCCCCTCCCGGTTG
CTATGGACCTGCTGCTATACATTTAGGAATCATGTAAACGATTTCTTTTG
AAAGAAGCTCATTTCAATTACACCTGAAGCTTCTGGGGAATTCGATAGTA
AACATCAATGAATACAGTCTGCTAGACATTAATACGGTTAATATTTGCTC
TTCATCTTTGATTCTTTCTACAGTGATTAAATTGATACATGCGTGATAAA
ATTTCTACACATATGATCGTCAGATGTTATTATTTTCTTTGAAAACTTTT
TCGACTTTAAAGTAAATACGTCCCATGCGCAGAGAATCAGAATTTGCTTG
GATATTATATTTTTTAGTACTCTAAATTATGATTACGATTATGATTATTA
TTTATCTATTTTAGAAAAGACAGCCGGAGAATTTCCATGGTATGAAACCA
ATTATTTACATCAAGGGTAAGTAAATAAAACCTCTACAAAAGCGTGGGTA
GTATTTTGAGTCACGGAACACGAATAATCCGTTTGTGTGTGCCAGCATTA
TAAGTTTCCCAATGTGCTCTTTTAGGTGTAAAGTCTTTTAAAATTCTCAA
AAGAAAAATTTGCAAATGTTTAGACTCGCGAAAATTTCTTTAAAATCAAA
TATATGAAAATGCATGCATATTCTTAACTATCATTTCTTTCTTTAATCAT
GCTTGAGGCTTTCGCTTGAATTATCCAGATCTACAATAACCAATGACTTG
GAATTTTTACCAGTAGTAGAAGATGCTATGGAAACATTATCTACTAGATT
TTAGTTCAGCCACCTATAAGGTTGGTATTTTATGGGCCAAAATTACCCAG
AAAGATAAGAGTGCGAACAAAATTGGTTAAGTGGTTATTNNNNNNNNNNN
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NNNNNNNNNNNNNNNNAACAAAAGTAACGGCTATCAGTAACATTTCTTTC
CAAATTCAACAACTTATTTGATCGTTCTTCTGCGGTGGCACTTTAATGAA
AATTATGGCTAGTTTGGTATTTAATAGACCATCCAAAATTTTCTCTTGGA
ACTCAGGTTTTAGAAGTCCTTCCTTTCGCCTTGGAATTTCCACAACTGAA
AGCTATTGACTCTGAGATAGGAGTTAGTGCACAAAATTCTTGCACTGTTC
ATATTTTACAGACCATGTACGTATCTTACACAGTATAGTGAACTATAAGT
TCGAAATACTATTTATGTAGCCCCAAAACGACCAAATATGTTACTCTTTA
TAGGTGCAAATTAAACAGGGGGGTTCGAATAAACAGGAGGGTTGGAAAGA
TTTTTTTCAAATTAAATAAACGGGGGGCCTAATTACCGGGGGGCTGGGAA
ATAGACCTTCAAAAACCCTAAAAAAGGTCAATATGGACTAAATGACCAAA
ACGACCAAATACGTTACTCTTTATAGGTGCCAATTAAACAGGGGGGTTCG
AATAAACAGGAGGGTTGGTAAGATTTTTTTCAAATCAAATAAACGGGGGG
CCTAATTACCGGGGGGGGCTAGGAAATAGACCTTCAAAAACCCTAAAAAA
GGGTCAATAGGGACTAAATTTAGGCTTTTTATAGTGTAAAACAAGGAACT
TTCCTTTTGGTAGCTGGGAATTTTTTCAAAAATTAATAAACGAGGGGGTC
CTAATAAGGTCCAGGGGGTTGGAAAAAAAATCGAGAAATAAACAAGCGGG
GGGCCGACTTTTCTAACCGATTCAAATCAGCCTTATCATGCAAATCTTTT
CTCATTTTTTCAAAAGTTCATGTCGTAATATTTGCCATTTTTTTCGACTT
CATGAAAGTTTATTCTTAATAACAAAATATTTTCATTTTGATTTTTTTTA
TCATAGAAAAGAAAGCATTTTCTGGTGGACTTATCAAATACATTCCTGTC
CAGTCTCCAGAATGGGAACTAACGCTGAGCATCAAATTCAATAGTTTCAT
AACAAACCTATGGAAAGGTATTCTCCGCTTTACTGACGGAAGTGCACACT
TAAATCATGGAAACCGAGTCCCGCTCTTGGTCATGAAAGGTAGTATGCTT
CAGATTTCAAGCTCAGTCAACAATAATTGGGACCATTATTACTTGAAATA
CAACCTTGTCCTAAATACTGTTTATAACATCAAAGTTGCTCAATATTATA
TCTCCAATGGTCGTTACAGATATTTTATAGAGATTGATGGAATAGAAGTT
AAATCTACTGTCAACACAAACCCAATGCAATTTTACAATGTTGCAGTTTA
TATATTGCAAAGTTCAGGGGCAGATTGCGACGTCACCAATTTAAAATTCG
TCAATTTTTTGTAAATTTTCTTATTCAAATCTAACAGCCTGTAGGTGTAA
AGAAAACAGGGGATGTATGTTACACGTTTTTTTATAAGAACACTTTATAA
AAATGTTTATGATGAAAATGGCCAAAAAATTAAGAATTTTGCCATCGTGA
AAATTTTCAATTTTGTTTAAGAATATATTTCTGCTTTTATAATTTTCTGT
TCTTTACTTTGTACTTTACAATTACATAGCTGTTTAATACATTACATGTT
TTTTTTATAAGCATATAAAAATCCGAAAACAGGCTCAGAAATGCTTAGGT
TGAAAGTTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_012061	XLOC_012061	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00021511-exon-sc0000388-1575043694:219141..219402	TCONS_00021511-exon-sc0000388-1575043694:219141..219402	Clytia hemisphaerica	exon
TCONS_00021511-exon-sc0000388-1575043694:217937..217988	TCONS_00021511-exon-sc0000388-1575043694:217937..217988	Clytia hemisphaerica	exon
TCONS_00021511-exon-sc0000388-1575043694:213494..214246	TCONS_00021511-exon-sc0000388-1575043694:213494..214246	Clytia hemisphaerica	exon
TCONS_00021511-exon-sc0000388-1510915933:219141..219402	TCONS_00021511-exon-sc0000388-1510915933:219141..219402	Clytia hemisphaerica	exon
TCONS_00021511-exon-sc0000388-1510915933:217937..217988	TCONS_00021511-exon-sc0000388-1510915933:217937..217988	Clytia hemisphaerica	exon
TCONS_00021511-exon-sc0000388-1510915933:213494..214246	TCONS_00021511-exon-sc0000388-1510915933:213494..214246	Clytia hemisphaerica	exon
TCONS_00021511-exon-sc0000388-1491911889:219141..219402	TCONS_00021511-exon-sc0000388-1491911889:219141..219402	Clytia hemisphaerica	exon
TCONS_00021511-exon-sc0000388-1491911889:217937..217988	TCONS_00021511-exon-sc0000388-1491911889:217937..217988	Clytia hemisphaerica	exon
TCONS_00021511-exon-sc0000388-1491911889:213494..214246	TCONS_00021511-exon-sc0000388-1491911889:213494..214246	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000388	supercontig	sc0000388:213494..219402 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.382092	0.362899	0.374543	0.398624	0	0.0766871	0.0722856	0	0.0349574	0.0431603	0	0.0275384	3.03766	3.20892	2.17949	1.652	0.264642	0.435183	7.16458	4.94871	1.23943	0.695598	0.503701	1.18628	0.44395	1.12691	0.568463	0.468548	0.0458946	0.0467593

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00021511 vs. Swiss-Prot (Human)

BLAST of TCONS_00021511 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00021511 (transcript) - C. hemisphaerica