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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021505 ID=TCONS_00021505|Name=TCONS_00021505|organism=Clytia hemisphaerica|type=transcript|length=1679bpRun BLAST on NCBI protein sequence of TCONS_00021505-protein >TCONS_00021505-protein ID=TCONS_00021505-protein|Name=TCONS_00021505-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp PDENIIYNPETLMRQILHVCHYIPDTWKGKAHTLHVREEFSRLFQYKFVYRun BLAST on NCBI transcript from alignment at sc0000388:83757..103542- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021505 ID=TCONS_00021505|Name=TCONS_00021505|organism=Clytia hemisphaerica|type=transcript|length=19786bp|location=Sequence derived from alignment at sc0000388:83757..103542- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000388:83757..103542- >TCONS_00021505 ID=TCONS_00021505|Name=TCONS_00021505|organism=Clytia hemisphaerica|type=CDS|length=9390bp|location=Sequence derived from alignment at sc0000388:83757..103542- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00021505 vs. Swiss-Prot (Human)
Match: ATG9A (Autophagy-related protein 9A OS=Homo sapiens GN=ATG9A PE=1 SV=3) HSP 1 Score: 156.377 bits (394), Expect = 3.717e-40 Identity = 88/188 (46.81%), Postives = 121/188 (64.36%), Query Frame = 3
Query: 3 PDENIIYNPETLMRQILHVCHYIPDTWKGKAHTLHVREEFSRLFQYKFVYXXXXXXXXXXXXXXXXXXIRHKSQQIIDFYRNFTVEVTGVGDVCSFAQMDVRKHGHKMWMSGHXXXXXXXXXXXXXXVFEDLEKQQAEHGKTELSLIHFKYKNPTWEPTNSGKQYIESVREHALQESMTASMHHSHFL 566
PD+++++ PE L+R IL HY+PD W+G AH R+EF++LFQYK V++LEELLSP++TP +L F +R ++ +IIDF+RNFTVEV GVGD CSFAQMDVR+HGH W+S + E QQAE GKTELSL+HF NP W+P ++ ++E ++ AS+ L
Sbjct: 426 PDQHMVFCPEQLLRVILAHIHYMPDHWQGNAHRSQTRDEFAQLFQYKAVFILEELLSPIVTPLILIFCLRPRALEIIDFFRNFTVEVVGVGDTCSFAQMDVRQHGHPQWLSAGQT--------------EASVYQQAEDGKTELSLMHFAITNPGWQPPRESTAFLGFLKEQVQRDGAAASLAQGGLL 599 The following BLAST results are available for this feature:
BLAST of TCONS_00021505 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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