TCONS_00021504 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021504
Unique NameTCONS_00021504
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length968

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021504 ID=TCONS_00021504|Name=TCONS_00021504|organism=Clytia hemisphaerica|type=transcript|length=968bp
CATTTCACTGCTTTCTCTACCATGTTTAATTCGGAGAATTTTTAAAAGGC
CTAAGAGCGAAGTTTGTATTTTTGCCTTGAGGTTCTAACGAGTTCTTGAT
AAAGCTTGAGAGCTAAGTTGCTATTACGTAAAGAATGGCGCATGCGCTGT
AATAAAAATTACCTCCGTTACTACCTAATCCCGTGTGCATAAAGTCTAAC
GTGAGCTTGTCATTTACACTGGACTGATTCGGACAAAGAGTAGCTGAACT
TTACCAAAAGCCAAGAGAGTCAATATGTATCCAGTCACTAGAATTGCAGC
TCCAGCTCTCAGAAATGCTactCGAGCACTTGTCCGAACCCAACCAATCG
TAAGATCAACAGTTCTTCCTACTACATCGGCCATAGTCCCATCCTCTGGA
TTACATACATCAACAGCCAACCGTGATATCGAGCAAGCTGCTAAATTCAT
CGGTGCTGGAGCTGCCACAGTAGGATGTGCCGgaTCCGGAGCTGGTATCG
GAACAGTTTTCGGTAGCTTGATCATCGGTTATGCTCGTAATCCATCATTG
AAACCACAACTTTTCTCATATGCCATCTTGGGATTTGCTTTGTCAGAAGC
CATGGGACTTTTCTCCCTTATGATGTCTTTCTTGATCCTCTTCGGCTTGT
AGATATTTAGCAATGTAAACTTTTAttaacaattttttaattttagtaat
tATGTTTCGATGGAACGGCTCAGGGTTTAATACCAAAGGAACTGGTTGTT
CAGGATAAAGATCTTGTTAAAATGTAGAAtgttttttgtgactttttaaa
tttcaaaatattttaatagaATCCATGTGATTCGACTCggaaaaaatttg
tttcatcttctttttataGAAAACCTGTTTTGTGGTGATTGGATTTATGT
TACCGTTTAGTTTCGAAATATTCTTGAATAGCGCTCCGCATCTCACacgt
cataattatttcaactag
Run BLAST on NCBI

transcript from alignment at sc0000388:55649..71988-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021504 ID=TCONS_00021504|Name=TCONS_00021504|organism=Clytia hemisphaerica|type=transcript|length=16340bp|location=Sequence derived from alignment at sc0000388:55649..71988- (Clytia hemisphaerica)
CATTTCACTGCTTTCTCTACCATGTTTAATTCGGAGAATTTTTAAAAGGC
CTAAGAGCGAAGTTTGTATTTTTGCCTTGAGGTTCTAACGAGTTCTTGAT
AAAGCTTGAGAGCTAAGTTGCTATTACGTAAAGAATGGCGCATGCGCTGT
AATAAAAATTACCTCCGTTACTACCTAATCCCGTGTGCATAAAGTCTAAC
GTGAGCTTGTCATTTACACTGGACTGATTCGGACAAAGAGTAGCTGAACT
TTACCAAAAGCCAAGAGAGTCAATATGTATCCAGTCACTAGAATTGCAGC
TCCAGCTCTCAGAAATGCTGTAAGTTATGTTTTTTTATAATTCACGTTGG
ATTTTTTTCACATAAGCTGTGTTTACAGATGTAAAAAATGTTGATTTGAG
CAGCTGAGTGTCAACAGGTCAAGTTTGTGTAAAACCAAGCTACTAAGCCT
ACGGTTATCTTTTTAGAATCCCCAACAAAATATTGGTCTGTATATAAGCT
TTGCATCAAGTAAGGGTGAAACATTAGCCAGGTTATGTCAATCGAAAATT
GTTTGATAACCGAACTGATAAACTAGCTGTATTGTATAAGGGTTGTGAAG
CGATCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTG
ACACTGAAGTGTTCCTATGCACCAATACACAAAAAGTCCATTGATTTAGT
CCCCTCCCCATCTCATTCATCAGCTTGATGAGCTCACATGCCATACTCCA
TGTGCTTTTTCCTGGTCTGTCGTCCTCCAAAACATTTCACTGCTTTCTCT
ACCATGTTTAATTCGGAGAATTTTTAAAAGGCCTAAGAGCGAAGTTTGTA
TTTTTGCCTTGAGGTTCTAACGAGTTCTTGATAAAGCNAAAACAAAAATG
TACAAAGATGGCTTGTTGGTTCTTCGGCAGTTTTGATTTATTTCTTGACA
AATTCGACAAATTTGATTACCTCCTTACTTCTTTATCATAGAACATCCAC
TTGGTTTTGCAAGGTAAGTTTCGTTCACTAAAACTAAAAGAGCACTTCTC
CATCCCGCCCGCGCGACTTGCAAAAACCTCTCATTGATTGACCTTATTTG
ATATGATACTTGATACTTGCTGTTAAAAGTCAAGGGACGATGAAGATCCT
TTCCGTCAGCACCGTTCAAACTATTATTTTTTCCATTAAACAGCAAAATA
AACATTAAAAACTGAAGAACCACTGCTTAGATTGCTTAGATGCGTGCCGC
CCGCGCGGCAATTTGATCAACTTCAGAATCTAAGTCCAGACGGTGTCAAT
CAAACAACTTCAAACGGAAATCGTAATATTCGATTGTGTTCGATTGCGTT
CAAGTAACGTTCGATTGGTAGTCAACCTATGTTTAATCGGTTCGATTGAT
TGTAAATTACCTTCGATTGATCTTCGATTATGATTATTTTCGATAAGTTT
GATTACGATTAAATTAAATTTGATCACTCCTTTAAAGCTCTTTTTAGCGT
GGACGGCCAAGTCGTAAGTAACCGTACTAGAATGAATAAAATAGAATACA
ATTGAATCAATCGAACGCAATCGAACATAATCGAATACAATCGAACGTAA
TCGAAGCAATCGAACGGCAAATTCTGAGTAATATTCGATTGCGATTCGAT
TGCGTTCGACAAGCGAATCGCAATTATTCGATTGTGTTCGATTGCGTTCA
ATTGATTCGGCGTTCGATTCATTCGATTGACACTGTCTGGCTAAGTCCGT
GTTTCGGCTTCCGGTAATTTTGTTGCTGTTCACTACTGCTAGGGTGCACC
ATTTTAAAACGGCATTTTTCGCAGTCCCATCCTAGCTACCAAACCGAGAA
AGTTTTCGTGGCTTCAAGCCAAACCATTCAAGGTCATTTTAAAGATGCAA
TTTATATAGCAAATTTTATAGCAAATTTTCGCTTGGGATAGAAGTTTAAA
GGTACGTGCACAATATAGCAAAACTGCTTCGCTCATAAATTCGCTTCGCN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACCTAAAAACAAGCTT
AGGTCGGCAAAATTTTGCCGGCCTTCGGCCGGATTTGGACGGCACTTACG
TGCCGACTTACTTTTACTTGAATTTCGAGGGCTGCAATTATTTTGATGCT
CTCCACCGTTTGGGCTCTGGAGGTTGTAAACAAACCTGTTTTGCCTGCGT
TTCCTTAGGAAAAGTTTTTTTGCTCTTTTTTAGTTATGTTGAACAAAATC
CCCTCCAATTTCAGTATGTTCAAGGCGGTCATCGAAATATTGTTCTTTTC
GCGTCACCTGCTATCATCATGTTTTCCGCTGATTCTCTGATGCGGAGATG
TGGAAAAAAATCCGGGGAAAGCAATTTGTTCTTTTAATAGCTTTTTTCTC
ACTTTCTCTGACGGCCATCAAAAAATTGATTTGCTCGCCTCACCACCCGC
CCCTGAATTACTGGCGTGATTAAAAAAACCAGGAATTTTTTCGACCGCCC
GTCCACCCGCATGCATTTTTAACACCCGTTGCAACGCGAACAGAGCATTT
TTTCGATTACCGTCCAATCTATTCATGATATTGTACCACCCTGAAAATCT
TTTGCCAAAAGAACATCGCTATCAACAGTTAGAAGCTGAAAACCCTAACC
CCAGACGGTGTCAATTGAACGAATCGAACATTGAATCAATTGAACGCAAT
CGAACACAATCGAATAACTTTCAGATAAAAAATATATTGACAATGAATGG
GTAAGCTTTCTAGAAATCAAAACACAAATAGCATAACTTTCGCTAAAAAA
AAGCAAACTAAAGATTTTCTNTTTTTACGGGTCGGTGCCCTTACAAACTT
CACTTTATATAAATATATAAATATATTCTATTTCTAGCCTATTATTTACA
ATTCGATATGATACAAAAGTTGTTTAAATAACTAAGCTTGTCATTTGTCT
TCGTGTTATAGTCGTGGGGACGGAAGTATATTCAGTCTAGGTGACATAAG
GTCTACCTAAATGACCCACGAAGGAGTGCTAGTTGACCACTTCCTTAACA
CTGAGGAGGGGTGTGCCCGGGCCGAACAGATCTTAGTTCGACCGCATATA
CTCCTCGTCTTTCATCTCGTCTCAAGTCGTGCGCATGAATGTCGACCAAA
GTCGACATCCCCACTCCATTGCCCTGATAACCATCAGTTCCCTGTACTTT
TTGGCGATGCCAAGCCGTTTGAATAAGTCGTCGTTCTTGGCGCACCAGAC
TCCACGTATAGAGATAATCAAGGCAGCATGCTTGATATCTTCCCGACCAG
TAAGATTGCGGACATAGTCATTGATAGGCTCAGAGTTGTAAATTTGAGCT
TTGTGGTCCCAGTTGCCATTCAAGGTGATCGTATTACCATGTATTCGCAT
CCTGCCGGTGACGATGGAAACGTCTATTATAGTAGCGGAGTCCGGTGACA
CAACAATCAGATCAGGTTTATGAAGTTGTTGATTGTTTATACGGATGTGG
TGCTCGTATAAGACTCGAAGATTGGCGGCCTCGAGGACAAGGTTGAACAA
GATGGGGGAGAGGGGATCTCCCTGCTTGACGCCCCGTAGGAGACGGATTC
GGTCAAGTTTCACTGGCCCGCATGAGATGTTCGTTGTGGCGCCAGTATAT
GTGTTGATGATGTAGTCGATCATCTGTTCTTCTACCTTGTGCCGCCGAAG
TGCTCTGGTCAGACTATGATGAGATACCGAGTCGAATGCTTTACTCAGAT
CTATCCCGACAATGGATAAGGTAGAACAACTCTTCCTGGCTTTCTGAGTC
AAGGATAACAGTGTTTTGAGCAATACCATCCATGGGAAGGAAAGCCTTCT
GTCTGGGATTGAGATGAAGCGCCTGAGTTAGACATTTAGCGAGGATACAA
TGGAGAAATCTCGCAATGACGATACTAATCGTAATCGGTCTCCAGTTGGA
AGCGTCATCGAGTCCGTCCGGCTTTTTGGGAATCAGAGTAGTTCTATTCT
TCTTCCACTGAACGGGTTGAGTTCCCGTGATGAGACAGTAGTTGAATATC
ATGCAGATCGAGCTCAGATTGGCAGCTTTTAGGTCTTTAGGTCTTTGACT
TTGAAGAAGTCAGGGCCTGCGGCTTTGTTGGGCATGTTTTTCAACTCTCG
TTTGATCTCCTCAATGGTGATTGGGAGAAAAGTCGGATTGCACGGATGAG
GGGCTTCTCGATATTCGTGATTATCAGCAGGGCTCTCAGATTCGTAGATC
CTCTGATACGTGTTACGAACACTTTCCGCAGTAAGAAAGGTATCAGTTTC
TTCGCAGGTGTCATTCAAGATGTTCGTAGTGAGTTGCTTTCTACTACGTT
TGAACATTTCTTGAAAACGGATGTAGCGCTTGAGACGTATACGTCGTCTA
TATGGCCTCCTATCCGGGGCAGGATTAACAGGTGGTCTCCTGCGTCGAGG
GGCTTGTCTCGTAAAGTGTTCGTTGATGTATCTCTCGAGTTCGGGCGTAA
CATCGGCTCCGTGGTCAATAAAGCGGGTTAATATCTGGCTCAGTTCGATA
TCATCCTCTGCAATCTCTCTGATCTGTCGGAAGAATGGGTCTCGACTATC
TGGAGGTGTATCAGCGAACCCTGATCTTCGTCGTCACTGCCACTGGCGAC
GGGATTATCGTCCCTCTCACGGACGATGATGTCATTTAGGATGTTTCGAT
ACTTGGCCGATTTCCGCTGACCCTTGATGGATTCTAGGGACTGTGGGAAC
TTACCGATGAGATACTGGTTAATAAAGCGAGTTTCAGGTGGTGCGGTCGC
TACGGAGACAGCTAAAAGCCTTAGTTCCTCATCGGACCATTGGGCCTTGA
CGCGTTGAACGTCTTGTGCCGCCTCATGTTGGATAGGGTGAGCGTGGCGC
ATATGCTGACCCAGACCTTGTCTGGTTCTGAACGACCTGTCGCAGAGCGT
ACAAGCGAACTCGTGAACAACAACCTGAGCGTAAGAGAGTCATAGTTACT
CCCGCCGTTTACCCGCGCTTGGATGAATTTCTTCGCTTTGACATCTTCTC
TGGGCAAATGACATTGAAACTAGTTTCTTTCAAGCTGTTGACTCTTTAGA
TTTATTGAGGAGAAATGGTGTCACACTCAATCCTGAAAAAGTCCAATTCG
CCCAAGATTGTGTCACGTTTGCTGGCTTTGAAATAACTCTGGACAACGTC
AAACCGTGTAGAAGATTCTTCGAAGCAATTGAGGACTTCCCGACCCCTCG
CAACATCCACGATATCCGATCATGGTTTGGCTTGATCAATCAAGTGTCTT
TTGCCTTCCCATCCGCTGAAATACTCCAACCATTCAGACACCTCCTTCGT
CGAAACACACCTTTCATATGGAACAAGCAATTGGACGAGACGTTCCAACT
ATCCAAACAGCTCATCGTCAACCACATTGCAGAGGGTATCACCATTTTTG
ACAAGGACAAGCCAACATGTTTAGCTACTGATTGGTCGAAGAAAGGCGTC
GGCTACTGGCTCCTGCAGAAGCAATGCCAATGTGAAGGCTCAAAAAACCT
GGTTGCTGTCATGATGGATGGAAGATCACACTGACTGGCAGTAGATTCAC
AAACTAATCTGAATCCAATTACTACCCCATAGTCGGCGAAGCATTAGCGG
TTGCTGATGCACTGGAAAAGACAAGATATTTCACCCTTGGCTGCTCAAAT
CTGATTGTGAACACCGACCATAAACCCCTTCTCAATATCTTCAGCGACAG
ATCTCTGAATGACATCCCAAACACTCATCTGAGGGACCGCAAAGAAAAGA
CCCTTCCATTCAAATTCACTATCACTCACATCCCTGGCCTGAGCTGAAGA
ACAACATCCCAAACGCATTCTCCAGATACCCAGTTGGTGAAGCACCTAAA
GACACTGGGGATGACGATTTTGACAAAATCTTGTCCATTGGATCTGCCTT
TCAAGCAATTACATGGGACATGGTGAAGGTTGCTACACAAAGCAGTGTAT
CCATGATGTATCTCATCAAAGCACTGGAAGATGGATTCCCAAACAAGAAA
GAGGACCTTCAACCAGACATCCAACAATACCATCAATACAGAAGTGATCT
CCGTTACGTTGATGTTGTCGTGTTATACAACCACAGGATTATCATCCCAC
CGTCACTTAGGGCCCAGACCCTGGATTCCCTTCATGCAGCCCACCAAAGC
ACTGGCATGATGCTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CGTGGGAAAAGGTTTTATTTCATTTACATTAAGTTTTAAAATTTTTTCTC
TCTCTTAAAATCTTTAAAAATTACTGATAAGCAATAGACTATATTGGCTT
AACGTGAAAACTCAAATTTGACCCCCGAGAATTACCCGCAATGCTTTGCG
CAGAAAAAAGTTCACAATGAAACTTTTCTGCACAAAGCATTGTGGGCAAT
TCTCCTTGCCTTAACCGCTTTACTTGCAAACTGTTTCAGAGATTTGTTTT
ACTTTTAAAAATTAAGTTTTAAAGGAAAAGCTCAGTTTTAAAGGAAAATC
TCAGTTTTATTGGAAAACCAAACTGAAATAAGTATATCACTCAAATCTTT
CAACCAGCTTGCCGTTAAAATGTCTTAAGACGTCCAAACAGAATCTGACA
GAATATACATAATTTTGACCAAACATATCCTACTAGTGTCCTATTTCAAA
ATACCCATCTGCCCAAGGGTAAATACTTCCTTTTTGTACACAGGCTCCTC
CTGACTTCAATGGTATCTTGTCTTTCGTCTGTATTCTCTATTACTATTGC
TGACATTTTTTCCTATTTTCCCATACACAATCTTTAGACAGGTCCATTCA
GCCTCTAGCTTGTCTTTCGTGGTCTTTAACCAAAACGCTAGTTTTCTTAT
CTTTTCTATCCGAAGTACTTAATTGTTTTAGCTTTTAAGTTATTAAAGAA
AATTCATGAACAAGCAGCTCCTAATAATTTTTTCCTGTGCACATTGCTCT
AAACTTTTAATGTAACGTAACAAATTTTACACCATTTTGTTGCCTGAGAA
GTTATCATCAAAATGGTATTAAATTGTTGCGATAAAATTTGGTCAAGCTT
CTGGAAAAGCCCCCCCCCCCAAGATGCTTCCCCTAGTAAAAGAATAGGAA
GATGCTCTGAGGGTTTAGGTATTTGACAACAGTAAACAAAACTCAATGAG
TGTGTTTTGCATATATAACATTTGAGAAAAGTTGTTAAGAATAAAGAACT
TTATGACCTGACCATTTCTTTATTTTTAGACTCGAGCACTTGTCCGAACC
CAACCAATCGTAAGATCAACAGTTCTTCCTACTACATCGGTATGAAACTT
TATCTTTTTTGGTTGACTATTTTCTTTATTTTAAAAATTTTTGATTTTAT
TTTAATTTAGCATCTACCATGGGAAGATTTAAACTGGTGTCAAAAATTCT
AAAGCCCAATGCCATTATTGCAACAAATTTTATGATCTTTTACAAATTTC
ATTCAAATAAAGCCTCAACAATAAAAAAGTGAAAATACGAAGTATTGAAT
ACAAAACCGCTAAAACGTTTTCATAGTGGGCACCCTCCCCCTTGCCCACT
TGAAAAAGGAGCGGTTTGAGAATTTTACTGGATTTAAAAGCAGTTGGGCT
TGTGAAAATTTCAAATAAAAGGTGTGGCTTGGACCAAAGGGGAGTTAATT
TTTTAATGGGGGCTTGGAAGATTTGTCAATTTGGAAAGAGTGTTTTCCAT
TAATTTTAAATTTCTCAACAATTACTATACTTCCATTCGTTTGAATGAAG
CAAAAACTCTTGTTTCTACAACTCTTGATGGAGTAAGTTGATTTTTCAAC
CTTTGCAAGACAGCTGCTTTTGTTTTTCCACCGGTTATTTCACAAAAGGT
TGAAAAAAGAGGTGAGTTGAACTTAAAGCTGGGAAAAAGAAGAGGGTTGA
ATGAAAAGATGGGGGTCGAGGAATTTTCATTTTTAAGAGGGGGTCGAGCT
TTAAAGAGTGGGTGTCACCACTATGGTTTTAAACCGAATATGGTCGTAAT
AACATCAAGGAAGTAAATTTGTTTTATTTTTTTAACGGCGCTATTAGAAG
TGTGTGTTTTTAGGTTAATTAAAGAAAGATAGTGAAACATTTATGAGACT
TCATTTCTCTTTCAGGCCATAGTCCCATCCTCTGGATTACANAAGTGTGT
GTTTTTAGGTTAATTAAAGAAAGATAGTGAAACATTAAGTATTCATTTTT
CTTTCAGGCAATTGTTCCATCCTCTGGATTACATACATCAACAGCCAACC
GTGATATCGAGCAAGCTGCTAAATTCATCGGTGCTGGAGCTGCCACAGTA
GGATGTGCCGGTAAGCATACAATGACATTGGTTTGTTATATCATATCTTT
CTAAAAGAGGATATCTTAAAGAGACTAAACTCAATTTGAAATTAAGAAAT
GTCATTTTGAAATAGAAGATGTATCCAATCGCTGGTTTATAATAGCCTGA
AGAATGAAATAGGCATACTCTTAAATACTTTCTGTAATTCGGGTCTTCCT
GTAGTTCGAATATTTTACGCTGAGCTGGAATTAGCGAGAGTCAATTGTAC
ATAAACCAGCGAATCAAGCCTTTTCTTGATATTCATGATGTAATCTTTGC
GCCGAAACAATAGATAAAGCGTAACAACTTTTCTGCCATTATTCTTGATA
TGGGTAAGTCAAGATGACGTCATATTTTTTAACGGAAGCACCCAAAAAAG
CCGGTTTTTGACCTCTGTGTTTCTATTTTTAGTAACAGAGAGGTCAAATC
CCGGCTTTTTTAGGGTGTTTCCGCTAGAAAAATGACTTACGCATATCAAG
AATTGGTGGCAAAATTTATGTATTGAAACCGGGTGCTTACGAAAATAACT
TAAAACGTATAATAATAGAATCAAATATCTTTTGGAAATCTATTGTAGAT
AATTAAAGAATTTCAATGAAACAGTTCTTTTTGGACCTACCTCCGGGTGC
CCCGGTGGAGGTTCTATAAATTAACCCATGTCCGTTCGTCTGTTCGTTCG
TTCGTTCGTCCGTCTGTTACCAGCTTTTCTCAGGATTGGCTCATTAGTTT
TTTCTGATTTTTTGCACAATGATGCAAAATGGCAATGCCCANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTT
TTTTGGACTTTGTGCAAAATCCTGTCATTACTTTTTTCTGATTTTTTGTA
CAAAGATGGAGGGCAAGATTCTCTAAAGAATGGCTGAAGTGGGTTTTTCC
CGGAAAATTCTTATTCGCCTTAAAAAACGGATATTTGTATTTTGGGGGAA
ATTCCCTTTAACCAAATAAGAAAATATAGCTTTTAACAATGTTGACTTCT
TATTTTTTTCTGATTTTTTGCACAATGATGCAGAAGGGCAATGCCTAAAA
TGTGTCGGAGCCCGATTTTCGAAAAAAAATATATTTGGGCAAATTTGGGC
CAAAAACTGCCTAAAAATAGGGTTTTTTGGACTTTGTGCAAAATCCTGTC
ATTTTTTTTTCTGATTTTTTGTGCAAAGATGGGGGGCAAGATTCTCTGAA
GAATGGCTGAAGTGGTTTTTCCCGGAAAATTCTTTTTCGCCTTAAAAAAC
GGATTTTCGTATTTTGGGGAAATTCCCTTTAACCAAATAAGAAAATATAG
CTTTTCTCAAAGTTGACTCATTATTTTTTTCTGATTTTTTTCACAATGAT
GCAAAATGGCAATGCCTGAAATGTGACGGAGCCAGATTTTCGAAAAAAAA
TATATTTGGGCAAATTTGGGCCAAAAACTGCCTAAAATAGGGTTTTTTGA
GCCTGAATGGTTTAAGTGATTTTTTTTATTTGGGGAAATTCCTTTTTACC
ANTCGAAAAAAAATATATTTGGGCAAATTTGGGCCAAAAACTCCCTAAAA
ATAGGGTTTTTTGGACTTTGTGCAAAATCCTGTCATTACTTTTTTCTGAT
TATTCAACACACAAGCTTTATTTTTCCATTCTGAATTTTTGCACAATTAT
TGTCACTTTTTTCTTATTTTCATCTGATGTTAATCATTAGGTAGGTCCAT
TCAGCATGTTGCTTGTTTTGTTTTGGAGTATTTGGATTTCTGTATTAATC
TTTTCTTATTTTTTTCTGGTGGTCCTTGCTTGGAAAACATTTTGTAACGC
AAATGTTTTGCCACCAATAATGGCGTCCAAGTGTTTTGATTCGGAGTGTC
AATCAAGGAAAAGATTACATCAGGAATATCAAGAATTCAATCTTGTTTGT
CTCATTAATTCTTTCCTATGAGTAAGATTTAGTGTAGAAGTTCGGTCTTG
GGATTTTTGCTGAATTATGTATTCAGTTTACTGTTTACCTAACCCTGTTT
ACCTAAGGCTTGCATTTTCTCGTTTCTTCTTTTAGGATCTNTACGTATTC
AGTTTACTGTTTACCTAACCCTGTTTACCTAAGGCTTGCATTTTCTTCTT
TTAGGATCCGGAGCTGGTATCGGAACAGTTTTCGGTAGCTTGATCATCGG
TTATGCTCGTAATCCATCATTGAAACCACAACTTTTCTCATATGCCATCT
TGGGATTTGCTTTGTCAGAAGCCATGGGACTTTTCTCCCTTATGATGTCT
TTCTTGATCCTCTTCGGCTTGTAGATATTTAGCAATGTAAACTTTTATTA
ACAATTTTTTAATTTTAGTAATTATGTTTCGATGGAACGGCTCAGGGTTT
AATACCAAAGGAACTGGTTGTTCAGGATAAAGATCTTGTTAAAATGTAGA
ATGTTTTTTGTGACTTTTTAAATTTCAAAATATTTTAATAGAATCCATGT
GATTCGACTCGGAAAAAATTTGTTTCATCTTCTTTTTATAGAAAACCTGT
TTTGTGGTGATTGGATTTATGTTACCGTTTAGTTTCGAAATATTCTTGAA
TAGCGCTCCGCATCTCACACGTCATAATTATTTCAACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012058XLOC_012058Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021504-exon-sc0000388-1575043694:71670..71988TCONS_00021504-exon-sc0000388-1575043694:71670..71988Clytia hemisphaericaexon
TCONS_00021504-exon-sc0000388-1575043694:59450..59509TCONS_00021504-exon-sc0000388-1575043694:59450..59509Clytia hemisphaericaexon
TCONS_00021504-exon-sc0000388-1575043694:58599..58623TCONS_00021504-exon-sc0000388-1575043694:58599..58623Clytia hemisphaericaexon
TCONS_00021504-exon-sc0000388-1575043694:58429..58506TCONS_00021504-exon-sc0000388-1575043694:58429..58506Clytia hemisphaericaexon
TCONS_00021504-exon-sc0000388-1575043694:55649..56134TCONS_00021504-exon-sc0000388-1575043694:55649..56134Clytia hemisphaericaexon
TCONS_00021504-exon-sc0000388-1510915933:71670..71988TCONS_00021504-exon-sc0000388-1510915933:71670..71988Clytia hemisphaericaexon
TCONS_00021504-exon-sc0000388-1510915933:59450..59509TCONS_00021504-exon-sc0000388-1510915933:59450..59509Clytia hemisphaericaexon
TCONS_00021504-exon-sc0000388-1510915933:58599..58623TCONS_00021504-exon-sc0000388-1510915933:58599..58623Clytia hemisphaericaexon
TCONS_00021504-exon-sc0000388-1510915933:58429..58506TCONS_00021504-exon-sc0000388-1510915933:58429..58506Clytia hemisphaericaexon
TCONS_00021504-exon-sc0000388-1510915933:55649..56134TCONS_00021504-exon-sc0000388-1510915933:55649..56134Clytia hemisphaericaexon
TCONS_00021504-exon-sc0000388-1491911889:71670..71988TCONS_00021504-exon-sc0000388-1491911889:71670..71988Clytia hemisphaericaexon
TCONS_00021504-exon-sc0000388-1491911889:59450..59509TCONS_00021504-exon-sc0000388-1491911889:59450..59509Clytia hemisphaericaexon
TCONS_00021504-exon-sc0000388-1491911889:58599..58623TCONS_00021504-exon-sc0000388-1491911889:58599..58623Clytia hemisphaericaexon
TCONS_00021504-exon-sc0000388-1491911889:58429..58506TCONS_00021504-exon-sc0000388-1491911889:58429..58506Clytia hemisphaericaexon
TCONS_00021504-exon-sc0000388-1491911889:55649..56134TCONS_00021504-exon-sc0000388-1491911889:55649..56134Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000388supercontigsc0000388:55649..71988 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
138.142	141.778	141.036	316.42	257.306	194.024	207.695	224.688	79.4556	73.2917	93.1685	137.111	69.1693	83.2003	171.19	138.196	304.527	224.989	95.8244	69.3627	193.043	167.572	180.5	156.61	126.687	157.339	288.198	239.945	122.562	115.023
Blast
[Close]
BLAST of TCONS_00021504 vs. Swiss-Prot (Human)
Match: AT5G2 (ATP synthase F(0) complex subunit C2, mitochondrial OS=Homo sapiens GN=ATP5G2 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 4.289e-32
Identity = 63/78 (80.77%), Postives = 66/78 (84.62%), Query Frame = 2 
Query:  368 PTTSAIVPSSGLHTSTANRDIEQAAKFIGAGAATVGCAGSGAGIGTVFGSLIIGYARNPSLKPQLFSYAILGFALSEA 601
            P TS +V S    TS  +RDI+ AAKFIGAGAATVG AGSGAGIGTVFGSLIIGYARNPSLK QLFSYAILGFALSEA
Sbjct:   49 PLTS-LVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 125
The following BLAST results are available for this feature:
BLAST of TCONS_00021504 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AT5G24.289e-3280.77ATP synthase F(0) complex subunit C2, mitochondria... [more]
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