TCONS_00021503 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021503
Unique NameTCONS_00021503
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length609

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021503 ID=TCONS_00021503|Name=TCONS_00021503|organism=Clytia hemisphaerica|type=transcript|length=609bp
AAAATTACCTCCGTTACTACCTAATCCCGTGTGCATAAAGTCTAACGTGA
GCTTGTCATTTACACTGGACTGATTCGGACAAAGAGTAGCTGAACTTTAC
CAAAAGCCAAGAGAGTCAATATGTATCCAGTCACTAGAATTGCAGCTCCA
GCTCTCAGAAATGCTactCGAGCACTTGTCCGAACCCAACCAATCGTAAG
ATCAACAGTTCTTCCTACTACATCGGCCATAGTCCCATCCTCTGGATTAC
ATACATCAACAGCCAACCGTGATATCGAGCAAGCTGCTAAATTCATCGGT
GCTGGAGCTGCCACAGTAGGATGTGCCGgaTCCGGAGCTGGTATCGGAAC
AGTTTTCGGTAGCTTGATCATCGGTTATGCTCGTAATCCATCATTGAAAC
CACAACTTTTCTCATATGCCATCTTGGGATTTGCTTTGTCAGAAGCCATG
GGACTTTTCTCCCTTATGATGTCTTTCTTGATCCTCTTCGGCTTGTAGAT
ATTTAGCAATAAAACCTGTTTTGTGGTGATTGGATTTATGTTACCGTTTA
GTTTCGAAATATTCTTGAATAGCGCTCCGCATCTCACacgtcataattat
ttcaactag
Run BLAST on NCBI

protein sequence of TCONS_00021503-protein

>TCONS_00021503-protein ID=TCONS_00021503-protein|Name=TCONS_00021503-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MYPVTRIAAPALRNATRALVRTQPIVRSTVLPTTSAIVPSSGLHTSTANR
DIEQAAKFIGAGAATVGCAGSGAGIGTVFGSLIIGYARNPSLKPQLFSYA
ILGFALSEAMGLFSLMMSFLILFGL
Run BLAST on NCBI

transcript from alignment at sc0000388:55649..71834-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021503 ID=TCONS_00021503|Name=TCONS_00021503|organism=Clytia hemisphaerica|type=transcript|length=16186bp|location=Sequence derived from alignment at sc0000388:55649..71834- (Clytia hemisphaerica)
AAAATTACCTCCGTTACTACCTAATCCCGTGTGCATAAAGTCTAACGTGA
GCTTGTCATTTACACTGGACTGATTCGGACAAAGAGTAGCTGAACTTTAC
CAAAAGCCAAGAGAGTCAATATGTATCCAGTCACTAGAATTGCAGCTCCA
GCTCTCAGAAATGCTGTAAGTTATGTTTTTTTATAATTCACGTTGGATTT
TTTTCACATAAGCTGTGTTTACAGATGTAAAAAATGTTGATTTGAGCAGC
TGAGTGTCAACAGGTCAAGTTTGTGTAAAACCAAGCTACTAAGCCTACGG
TTATCTTTTTAGAATCCCCAACAAAATATTGGTCTGTATATAAGCTTTGC
ATCAAGTAAGGGTGAAACATTAGCCAGGTTATGTCAATCGAAAATTGTTT
GATAACCGAACTGATAAACTAGCTGTATTGTATAAGGGTTGTGAAGCGAT
CCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTGACAC
TGAAGTGTTCCTATGCACCAATACACAAAAAGTCCATTGATTTAGTCCCC
TCCCCATCTCATTCATCAGCTTGATGAGCTCACATGCCATACTCCATGTG
CTTTTTCCTGGTCTGTCGTCCTCCAAAACATTTCACTGCTTTCTCTACCA
TGTTTAATTCGGAGAATTTTTAAAAGGCCTAAGAGCGAAGTTTGTATTTT
TGCCTTGAGGTTCTAACGAGTTCTTGATAAAGCNAAAACAAAAATGTACA
AAGATGGCTTGTTGGTTCTTCGGCAGTTTTGATTTATTTCTTGACAAATT
CGACAAATTTGATTACCTCCTTACTTCTTTATCATAGAACATCCACTTGG
TTTTGCAAGGTAAGTTTCGTTCACTAAAACTAAAAGAGCACTTCTCCATC
CCGCCCGCGCGACTTGCAAAAACCTCTCATTGATTGACCTTATTTGATAT
GATACTTGATACTTGCTGTTAAAAGTCAAGGGACGATGAAGATCCTTTCC
GTCAGCACCGTTCAAACTATTATTTTTTCCATTAAACAGCAAAATAAACA
TTAAAAACTGAAGAACCACTGCTTAGATTGCTTAGATGCGTGCCGCCCGC
GCGGCAATTTGATCAACTTCAGAATCTAAGTCCAGACGGTGTCAATCAAA
CAACTTCAAACGGAAATCGTAATATTCGATTGTGTTCGATTGCGTTCAAG
TAACGTTCGATTGGTAGTCAACCTATGTTTAATCGGTTCGATTGATTGTA
AATTACCTTCGATTGATCTTCGATTATGATTATTTTCGATAAGTTTGATT
ACGATTAAATTAAATTTGATCACTCCTTTAAAGCTCTTTTTAGCGTGGAC
GGCCAAGTCGTAAGTAACCGTACTAGAATGAATAAAATAGAATACAATTG
AATCAATCGAACGCAATCGAACATAATCGAATACAATCGAACGTAATCGA
AGCAATCGAACGGCAAATTCTGAGTAATATTCGATTGCGATTCGATTGCG
TTCGACAAGCGAATCGCAATTATTCGATTGTGTTCGATTGCGTTCAATTG
ATTCGGCGTTCGATTCATTCGATTGACACTGTCTGGCTAAGTCCGTGTTT
CGGCTTCCGGTAATTTTGTTGCTGTTCACTACTGCTAGGGTGCACCATTT
TAAAACGGCATTTTTCGCAGTCCCATCCTAGCTACCAAACCGAGAAAGTT
TTCGTGGCTTCAAGCCAAACCATTCAAGGTCATTTTAAAGATGCAATTTA
TATAGCAAATTTTATAGCAAATTTTCGCTTGGGATAGAAGTTTAAAGGTA
CGTGCACAATATAGCAAAACTGCTTCGCTCATAAATTCGCTTCGCNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACCTAAAAACAAGCTTAGGT
CGGCAAAATTTTGCCGGCCTTCGGCCGGATTTGGACGGCACTTACGTGCC
GACTTACTTTTACTTGAATTTCGAGGGCTGCAATTATTTTGATGCTCTCC
ACCGTTTGGGCTCTGGAGGTTGTAAACAAACCTGTTTTGCCTGCGTTTCC
TTAGGAAAAGTTTTTTTGCTCTTTTTTAGTTATGTTGAACAAAATCCCCT
CCAATTTCAGTATGTTCAAGGCGGTCATCGAAATATTGTTCTTTTCGCGT
CACCTGCTATCATCATGTTTTCCGCTGATTCTCTGATGCGGAGATGTGGA
AAAAAATCCGGGGAAAGCAATTTGTTCTTTTAATAGCTTTTTTCTCACTT
TCTCTGACGGCCATCAAAAAATTGATTTGCTCGCCTCACCACCCGCCCCT
GAATTACTGGCGTGATTAAAAAAACCAGGAATTTTTTCGACCGCCCGTCC
ACCCGCATGCATTTTTAACACCCGTTGCAACGCGAACAGAGCATTTTTTC
GATTACCGTCCAATCTATTCATGATATTGTACCACCCTGAAAATCTTTTG
CCAAAAGAACATCGCTATCAACAGTTAGAAGCTGAAAACCCTAACCCCAG
ACGGTGTCAATTGAACGAATCGAACATTGAATCAATTGAACGCAATCGAA
CACAATCGAATAACTTTCAGATAAAAAATATATTGACAATGAATGGGTAA
GCTTTCTAGAAATCAAAACACAAATAGCATAACTTTCGCTAAAAAAAAGC
AAACTAAAGATTTTCTNTTTTTACGGGTCGGTGCCCTTACAAACTTCACT
TTATATAAATATATAAATATATTCTATTTCTAGCCTATTATTTACAATTC
GATATGATACAAAAGTTGTTTAAATAACTAAGCTTGTCATTTGTCTTCGT
GTTATAGTCGTGGGGACGGAAGTATATTCAGTCTAGGTGACATAAGGTCT
ACCTAAATGACCCACGAAGGAGTGCTAGTTGACCACTTCCTTAACACTGA
GGAGGGGTGTGCCCGGGCCGAACAGATCTTAGTTCGACCGCATATACTCC
TCGTCTTTCATCTCGTCTCAAGTCGTGCGCATGAATGTCGACCAAAGTCG
ACATCCCCACTCCATTGCCCTGATAACCATCAGTTCCCTGTACTTTTTGG
CGATGCCAAGCCGTTTGAATAAGTCGTCGTTCTTGGCGCACCAGACTCCA
CGTATAGAGATAATCAAGGCAGCATGCTTGATATCTTCCCGACCAGTAAG
ATTGCGGACATAGTCATTGATAGGCTCAGAGTTGTAAATTTGAGCTTTGT
GGTCCCAGTTGCCATTCAAGGTGATCGTATTACCATGTATTCGCATCCTG
CCGGTGACGATGGAAACGTCTATTATAGTAGCGGAGTCCGGTGACACAAC
AATCAGATCAGGTTTATGAAGTTGTTGATTGTTTATACGGATGTGGTGCT
CGTATAAGACTCGAAGATTGGCGGCCTCGAGGACAAGGTTGAACAAGATG
GGGGAGAGGGGATCTCCCTGCTTGACGCCCCGTAGGAGACGGATTCGGTC
AAGTTTCACTGGCCCGCATGAGATGTTCGTTGTGGCGCCAGTATATGTGT
TGATGATGTAGTCGATCATCTGTTCTTCTACCTTGTGCCGCCGAAGTGCT
CTGGTCAGACTATGATGAGATACCGAGTCGAATGCTTTACTCAGATCTAT
CCCGACAATGGATAAGGTAGAACAACTCTTCCTGGCTTTCTGAGTCAAGG
ATAACAGTGTTTTGAGCAATACCATCCATGGGAAGGAAAGCCTTCTGTCT
GGGATTGAGATGAAGCGCCTGAGTTAGACATTTAGCGAGGATACAATGGA
GAAATCTCGCAATGACGATACTAATCGTAATCGGTCTCCAGTTGGAAGCG
TCATCGAGTCCGTCCGGCTTTTTGGGAATCAGAGTAGTTCTATTCTTCTT
CCACTGAACGGGTTGAGTTCCCGTGATGAGACAGTAGTTGAATATCATGC
AGATCGAGCTCAGATTGGCAGCTTTTAGGTCTTTAGGTCTTTGACTTTGA
AGAAGTCAGGGCCTGCGGCTTTGTTGGGCATGTTTTTCAACTCTCGTTTG
ATCTCCTCAATGGTGATTGGGAGAAAAGTCGGATTGCACGGATGAGGGGC
TTCTCGATATTCGTGATTATCAGCAGGGCTCTCAGATTCGTAGATCCTCT
GATACGTGTTACGAACACTTTCCGCAGTAAGAAAGGTATCAGTTTCTTCG
CAGGTGTCATTCAAGATGTTCGTAGTGAGTTGCTTTCTACTACGTTTGAA
CATTTCTTGAAAACGGATGTAGCGCTTGAGACGTATACGTCGTCTATATG
GCCTCCTATCCGGGGCAGGATTAACAGGTGGTCTCCTGCGTCGAGGGGCT
TGTCTCGTAAAGTGTTCGTTGATGTATCTCTCGAGTTCGGGCGTAACATC
GGCTCCGTGGTCAATAAAGCGGGTTAATATCTGGCTCAGTTCGATATCAT
CCTCTGCAATCTCTCTGATCTGTCGGAAGAATGGGTCTCGACTATCTGGA
GGTGTATCAGCGAACCCTGATCTTCGTCGTCACTGCCACTGGCGACGGGA
TTATCGTCCCTCTCACGGACGATGATGTCATTTAGGATGTTTCGATACTT
GGCCGATTTCCGCTGACCCTTGATGGATTCTAGGGACTGTGGGAACTTAC
CGATGAGATACTGGTTAATAAAGCGAGTTTCAGGTGGTGCGGTCGCTACG
GAGACAGCTAAAAGCCTTAGTTCCTCATCGGACCATTGGGCCTTGACGCG
TTGAACGTCTTGTGCCGCCTCATGTTGGATAGGGTGAGCGTGGCGCATAT
GCTGACCCAGACCTTGTCTGGTTCTGAACGACCTGTCGCAGAGCGTACAA
GCGAACTCGTGAACAACAACCTGAGCGTAAGAGAGTCATAGTTACTCCCG
CCGTTTACCCGCGCTTGGATGAATTTCTTCGCTTTGACATCTTCTCTGGG
CAAATGACATTGAAACTAGTTTCTTTCAAGCTGTTGACTCTTTAGATTTA
TTGAGGAGAAATGGTGTCACACTCAATCCTGAAAAAGTCCAATTCGCCCA
AGATTGTGTCACGTTTGCTGGCTTTGAAATAACTCTGGACAACGTCAAAC
CGTGTAGAAGATTCTTCGAAGCAATTGAGGACTTCCCGACCCCTCGCAAC
ATCCACGATATCCGATCATGGTTTGGCTTGATCAATCAAGTGTCTTTTGC
CTTCCCATCCGCTGAAATACTCCAACCATTCAGACACCTCCTTCGTCGAA
ACACACCTTTCATATGGAACAAGCAATTGGACGAGACGTTCCAACTATCC
AAACAGCTCATCGTCAACCACATTGCAGAGGGTATCACCATTTTTGACAA
GGACAAGCCAACATGTTTAGCTACTGATTGGTCGAAGAAAGGCGTCGGCT
ACTGGCTCCTGCAGAAGCAATGCCAATGTGAAGGCTCAAAAAACCTGGTT
GCTGTCATGATGGATGGAAGATCACACTGACTGGCAGTAGATTCACAAAC
TAATCTGAATCCAATTACTACCCCATAGTCGGCGAAGCATTAGCGGTTGC
TGATGCACTGGAAAAGACAAGATATTTCACCCTTGGCTGCTCAAATCTGA
TTGTGAACACCGACCATAAACCCCTTCTCAATATCTTCAGCGACAGATCT
CTGAATGACATCCCAAACACTCATCTGAGGGACCGCAAAGAAAAGACCCT
TCCATTCAAATTCACTATCACTCACATCCCTGGCCTGAGCTGAAGAACAA
CATCCCAAACGCATTCTCCAGATACCCAGTTGGTGAAGCACCTAAAGACA
CTGGGGATGACGATTTTGACAAAATCTTGTCCATTGGATCTGCCTTTCAA
GCAATTACATGGGACATGGTGAAGGTTGCTACACAAAGCAGTGTATCCAT
GATGTATCTCATCAAAGCACTGGAAGATGGATTCCCAAACAAGAAAGAGG
ACCTTCAACCAGACATCCAACAATACCATCAATACAGAAGTGATCTCCGT
TACGTTGATGTTGTCGTGTTATACAACCACAGGATTATCATCCCACCGTC
ACTTAGGGCCCAGACCCTGGATTCCCTTCATGCAGCCCACCAAAGCACTG
GCATGATGCTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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GGAAAAGGTTTTATTTCATTTACATTAAGTTTTAAAATTTTTTCTCTCTC
TTAAAATCTTTAAAAATTACTGATAAGCAATAGACTATATTGGCTTAACG
TGAAAACTCAAATTTGACCCCCGAGAATTACCCGCAATGCTTTGCGCAGA
AAAAAGTTCACAATGAAACTTTTCTGCACAAAGCATTGTGGGCAATTCTC
CTTGCCTTAACCGCTTTACTTGCAAACTGTTTCAGAGATTTGTTTTACTT
TTAAAAATTAAGTTTTAAAGGAAAAGCTCAGTTTTAAAGGAAAATCTCAG
TTTTATTGGAAAACCAAACTGAAATAAGTATATCACTCAAATCTTTCAAC
CAGCTTGCCGTTAAAATGTCTTAAGACGTCCAAACAGAATCTGACAGAAT
ATACATAATTTTGACCAAACATATCCTACTAGTGTCCTATTTCAAAATAC
CCATCTGCCCAAGGGTAAATACTTCCTTTTTGTACACAGGCTCCTCCTGA
CTTCAATGGTATCTTGTCTTTCGTCTGTATTCTCTATTACTATTGCTGAC
ATTTTTTCCTATTTTCCCATACACAATCTTTAGACAGGTCCATTCAGCCT
CTAGCTTGTCTTTCGTGGTCTTTAACCAAAACGCTAGTTTTCTTATCTTT
TCTATCCGAAGTACTTAATTGTTTTAGCTTTTAAGTTATTAAAGAAAATT
CATGAACAAGCAGCTCCTAATAATTTTTTCCTGTGCACATTGCTCTAAAC
TTTTAATGTAACGTAACAAATTTTACACCATTTTGTTGCCTGAGAAGTTA
TCATCAAAATGGTATTAAATTGTTGCGATAAAATTTGGTCAAGCTTCTGG
AAAAGCCCCCCCCCCCAAGATGCTTCCCCTAGTAAAAGAATAGGAAGATG
CTCTGAGGGTTTAGGTATTTGACAACAGTAAACAAAACTCAATGAGTGTG
TTTTGCATATATAACATTTGAGAAAAGTTGTTAAGAATAAAGAACTTTAT
GACCTGACCATTTCTTTATTTTTAGACTCGAGCACTTGTCCGAACCCAAC
CAATCGTAAGATCAACAGTTCTTCCTACTACATCGGTATGAAACTTTATC
TTTTTTGGTTGACTATTTTCTTTATTTTAAAAATTTTTGATTTTATTTTA
ATTTAGCATCTACCATGGGAAGATTTAAACTGGTGTCAAAAATTCTAAAG
CCCAATGCCATTATTGCAACAAATTTTATGATCTTTTACAAATTTCATTC
AAATAAAGCCTCAACAATAAAAAAGTGAAAATACGAAGTATTGAATACAA
AACCGCTAAAACGTTTTCATAGTGGGCACCCTCCCCCTTGCCCACTTGAA
AAAGGAGCGGTTTGAGAATTTTACTGGATTTAAAAGCAGTTGGGCTTGTG
AAAATTTCAAATAAAAGGTGTGGCTTGGACCAAAGGGGAGTTAATTTTTT
AATGGGGGCTTGGAAGATTTGTCAATTTGGAAAGAGTGTTTTCCATTAAT
TTTAAATTTCTCAACAATTACTATACTTCCATTCGTTTGAATGAAGCAAA
AACTCTTGTTTCTACAACTCTTGATGGAGTAAGTTGATTTTTCAACCTTT
GCAAGACAGCTGCTTTTGTTTTTCCACCGGTTATTTCACAAAAGGTTGAA
AAAAGAGGTGAGTTGAACTTAAAGCTGGGAAAAAGAAGAGGGTTGAATGA
AAAGATGGGGGTCGAGGAATTTTCATTTTTAAGAGGGGGTCGAGCTTTAA
AGAGTGGGTGTCACCACTATGGTTTTAAACCGAATATGGTCGTAATAACA
TCAAGGAAGTAAATTTGTTTTATTTTTTTAACGGCGCTATTAGAAGTGTG
TGTTTTTAGGTTAATTAAAGAAAGATAGTGAAACATTTATGAGACTTCAT
TTCTCTTTCAGGCCATAGTCCCATCCTCTGGATTACANAAGTGTGTGTTT
TTAGGTTAATTAAAGAAAGATAGTGAAACATTAAGTATTCATTTTTCTTT
CAGGCAATTGTTCCATCCTCTGGATTACATACATCAACAGCCAACCGTGA
TATCGAGCAAGCTGCTAAATTCATCGGTGCTGGAGCTGCCACAGTAGGAT
GTGCCGGTAAGCATACAATGACATTGGTTTGTTATATCATATCTTTCTAA
AAGAGGATATCTTAAAGAGACTAAACTCAATTTGAAATTAAGAAATGTCA
TTTTGAAATAGAAGATGTATCCAATCGCTGGTTTATAATAGCCTGAAGAA
TGAAATAGGCATACTCTTAAATACTTTCTGTAATTCGGGTCTTCCTGTAG
TTCGAATATTTTACGCTGAGCTGGAATTAGCGAGAGTCAATTGTACATAA
ACCAGCGAATCAAGCCTTTTCTTGATATTCATGATGTAATCTTTGCGCCG
AAACAATAGATAAAGCGTAACAACTTTTCTGCCATTATTCTTGATATGGG
TAAGTCAAGATGACGTCATATTTTTTAACGGAAGCACCCAAAAAAGCCGG
TTTTTGACCTCTGTGTTTCTATTTTTAGTAACAGAGAGGTCAAATCCCGG
CTTTTTTAGGGTGTTTCCGCTAGAAAAATGACTTACGCATATCAAGAATT
GGTGGCAAAATTTATGTATTGAAACCGGGTGCTTACGAAAATAACTTAAA
ACGTATAATAATAGAATCAAATATCTTTTGGAAATCTATTGTAGATAATT
AAAGAATTTCAATGAAACAGTTCTTTTTGGACCTACCTCCGGGTGCCCCG
GTGGAGGTTCTATAAATTAACCCATGTCCGTTCGTCTGTTCGTTCGTTCG
TTCGTCCGTCTGTTACCAGCTTTTCTCAGGATTGGCTCATTAGTTTTTTC
TGATTTTTTGCACAATGATGCAAAATGGCAATGCCCANNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTTTTT
GGACTTTGTGCAAAATCCTGTCATTACTTTTTTCTGATTTTTTGTACAAA
GATGGAGGGCAAGATTCTCTAAAGAATGGCTGAAGTGGGTTTTTCCCGGA
AAATTCTTATTCGCCTTAAAAAACGGATATTTGTATTTTGGGGGAAATTC
CCTTTAACCAAATAAGAAAATATAGCTTTTAACAATGTTGACTTCTTATT
TTTTTCTGATTTTTTGCACAATGATGCAGAAGGGCAATGCCTAAAATGTG
TCGGAGCCCGATTTTCGAAAAAAAATATATTTGGGCAAATTTGGGCCAAA
AACTGCCTAAAAATAGGGTTTTTTGGACTTTGTGCAAAATCCTGTCATTT
TTTTTTCTGATTTTTTGTGCAAAGATGGGGGGCAAGATTCTCTGAAGAAT
GGCTGAAGTGGTTTTTCCCGGAAAATTCTTTTTCGCCTTAAAAAACGGAT
TTTCGTATTTTGGGGAAATTCCCTTTAACCAAATAAGAAAATATAGCTTT
TCTCAAAGTTGACTCATTATTTTTTTCTGATTTTTTTCACAATGATGCAA
AATGGCAATGCCTGAAATGTGACGGAGCCAGATTTTCGAAAAAAAATATA
TTTGGGCAAATTTGGGCCAAAAACTGCCTAAAATAGGGTTTTTTGAGCCT
GAATGGTTTAAGTGATTTTTTTTATTTGGGGAAATTCCTTTTTACCANTC
GAAAAAAAATATATTTGGGCAAATTTGGGCCAAAAACTCCCTAAAAATAG
GGTTTTTTGGACTTTGTGCAAAATCCTGTCATTACTTTTTTCTGATTATT
CAACACACAAGCTTTATTTTTCCATTCTGAATTTTTGCACAATTATTGTC
ACTTTTTTCTTATTTTCATCTGATGTTAATCATTAGGTAGGTCCATTCAG
CATGTTGCTTGTTTTGTTTTGGAGTATTTGGATTTCTGTATTAATCTTTT
CTTATTTTTTTCTGGTGGTCCTTGCTTGGAAAACATTTTGTAACGCAAAT
GTTTTGCCACCAATAATGGCGTCCAAGTGTTTTGATTCGGAGTGTCAATC
AAGGAAAAGATTACATCAGGAATATCAAGAATTCAATCTTGTTTGTCTCA
TTAATTCTTTCCTATGAGTAAGATTTAGTGTAGAAGTTCGGTCTTGGGAT
TTTTGCTGAATTATGTATTCAGTTTACTGTTTACCTAACCCTGTTTACCT
AAGGCTTGCATTTTCTCGTTTCTTCTTTTAGGATCTNTACGTATTCAGTT
TACTGTTTACCTAACCCTGTTTACCTAAGGCTTGCATTTTCTTCTTTTAG
GATCCGGAGCTGGTATCGGAACAGTTTTCGGTAGCTTGATCATCGGTTAT
GCTCGTAATCCATCATTGAAACCACAACTTTTCTCATATGCCATCTTGGG
ATTTGCTTTGTCAGAAGCCATGGGACTTTTCTCCCTTATGATGTCTTTCT
TGATCCTCTTCGGCTTGTAGATATTTAGCAATGTAAACTTTTATTAACAA
TTTTTTAATTTTAGTAATTATGTTTCGATGGAACGGCTCAGGGTTTAATA
CCAAAGGAACTGGTTGTTCAGGATAAAGATCTTGTTAAAATGTAGAATGT
TTTTTGTGACTTTTTAAATTTCAAAATATTTTAATAGAATCCATGTGATT
CGACTCGGAAAAAATTTGTTTCATCTTCTTTTTATAGAAAACCTGTTTTG
TGGTGATTGGATTTATGTTACCGTTTAGTTTCGAAATATTCTTGAATAGC
GCTCCGCATCTCACACGTCATAATTATTTCAACTAG

Coding sequence (CDS) from alignment at sc0000388:55649..71834-

>TCONS_00021503 ID=TCONS_00021503|Name=TCONS_00021503|organism=Clytia hemisphaerica|type=CDS|length=1890bp|location=Sequence derived from alignment at sc0000388:55649..71834- (Clytia hemisphaerica)
GATCCGGAGCTGGTATCGGAACAGTTTTCGGTAGCTTGATCATCGGTTAT
GCTCGTAATCCATCATTGAAACCACAACTTTTCTCATATGCCATCTTGGG
ATTTGCTTTGTCAGAAGCCATGGGACTTTTCTCCCTTATGATGTCTTTCT
TGATCCTCTTCGGCTTGTAGATACATCAACAGCCAACCGTGATATCGAGC
AAGCTGCTAAATTCATCGGTGCTGGAGCTGCCACAGTAGGATGTGCCGGC
CATAGTCCCATCCTCTGGATTACACTCGAGCACTTGTCCGAACCCAACCA
ATCGTAAGATCAACAGTTCTTCCTACTACATCGATGTATCCAGTCACTAG
AATTGCAGCTCCAGCTCTCAGAAATGCTGATCCGGAGCTGGTATCGGAAC
AGTTTTCGGTAGCTTGATCATCGGTTATGCTCGTAATCCATCATTGAAAC
CACAACTTTTCTCATATGCCATCTTGGGATTTGCTTTGTCAGAAGCCATG
GGACTTTTCTCCCTTATGATGTCTTTCTTGATCCTCTTCGGCTTGTAGAT
ACATCAACAGCCAACCGTGATATCGAGCAAGCTGCTAAATTCATCGGTGC
TGGAGCTGCCACAGTAGGATGTGCCGGCCATAGTCCCATCCTCTGGATTA
CACTCGAGCACTTGTCCGAACCCAACCAATCGTAAGATCAACAGTTCTTC
CTACTACATCGATGTATCCAGTCACTAGAATTGCAGCTCCAGCTCTCAGA
AATGCTGATCCGGAGCTGGTATCGGAACAGTTTTCGGTAGCTTGATCATC
GGTTATGCTCGTAATCCATCATTGAAACCACAACTTTTCTCATATGCCAT
CTTGGGATTTGCTTTGTCAGAAGCCATGGGACTTTTCTCCCTTATGATGT
CTTTCTTGATCCTCTTCGGCTTGTAGATACATCAACAGCCAACCGTGATA
TCGAGCAAGCTGCTAAATTCATCGGTGCTGGAGCTGCCACAGTAGGATGT
GCCGGCCATAGTCCCATCCTCTGGATTACACTCGAGCACTTGTCCGAACC
CAACCAATCGTAAGATCAACAGTTCTTCCTACTACATCGATGTATCCAGT
CACTAGAATTGCAGCTCCAGCTCTCAGAAATGCTGATCCGGAGCTGGTAT
CGGAACAGTTTTCGGTAGCTTGATCATCGGTTATGCTCGTAATCCATCAT
TGAAACCACAACTTTTCTCATATGCCATCTTGGGATTTGCTTTGTCAGAA
GCCATGGGACTTTTCTCCCTTATGATGTCTTTCTTGATCCTCTTCGGCTT
GTAGATACATCAACAGCCAACCGTGATATCGAGCAAGCTGCTAAATTCAT
CGGTGCTGGAGCTGCCACAGTAGGATGTGCCGGCCATAGTCCCATCCTCT
GGATTACACTCGAGCACTTGTCCGAACCCAACCAATCGTAAGATCAACAG
TTCTTCCTACTACATCGATGTATCCAGTCACTAGAATTGCAGCTCCAGCT
CTCAGAAATGCTGATCCGGAGCTGGTATCGGAACAGTTTTCGGTAGCTTG
ATCATCGGTTATGCTCGTAATCCATCATTGAAACCACAACTTTTCTCATA
TGCCATCTTGGGATTTGCTTTGTCAGAAGCCATGGGACTTTTCTCCCTTA
TGATGTCTTTCTTGATCCTCTTCGGCTTGTAGATACATCAACAGCCAACC
GTGATATCGAGCAAGCTGCTAAATTCATCGGTGCTGGAGCTGCCACAGTA
GGATGTGCCGGCCATAGTCCCATCCTCTGGATTACACTCGAGCACTTGTC
CGAACCCAACCAATCGTAAGATCAACAGTTCTTCCTACTACATCGATGTA
TCCAGTCACTAGAATTGCAGCTCCAGCTCTCAGAAATGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012058XLOC_012058Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021503-exon-sc0000388-1575043694:71670..71834TCONS_00021503-exon-sc0000388-1575043694:71670..71834Clytia hemisphaericaexon
TCONS_00021503-exon-sc0000388-1575043694:59450..59509TCONS_00021503-exon-sc0000388-1575043694:59450..59509Clytia hemisphaericaexon
TCONS_00021503-exon-sc0000388-1575043694:58599..58623TCONS_00021503-exon-sc0000388-1575043694:58599..58623Clytia hemisphaericaexon
TCONS_00021503-exon-sc0000388-1575043694:58429..58506TCONS_00021503-exon-sc0000388-1575043694:58429..58506Clytia hemisphaericaexon
TCONS_00021503-exon-sc0000388-1575043694:55953..56134TCONS_00021503-exon-sc0000388-1575043694:55953..56134Clytia hemisphaericaexon
TCONS_00021503-exon-sc0000388-1575043694:55649..55747TCONS_00021503-exon-sc0000388-1575043694:55649..55747Clytia hemisphaericaexon
TCONS_00021503-exon-sc0000388-1510915933:71670..71834TCONS_00021503-exon-sc0000388-1510915933:71670..71834Clytia hemisphaericaexon
TCONS_00021503-exon-sc0000388-1510915933:59450..59509TCONS_00021503-exon-sc0000388-1510915933:59450..59509Clytia hemisphaericaexon
TCONS_00021503-exon-sc0000388-1510915933:58599..58623TCONS_00021503-exon-sc0000388-1510915933:58599..58623Clytia hemisphaericaexon
TCONS_00021503-exon-sc0000388-1510915933:58429..58506TCONS_00021503-exon-sc0000388-1510915933:58429..58506Clytia hemisphaericaexon
TCONS_00021503-exon-sc0000388-1510915933:55953..56134TCONS_00021503-exon-sc0000388-1510915933:55953..56134Clytia hemisphaericaexon
TCONS_00021503-exon-sc0000388-1510915933:55649..55747TCONS_00021503-exon-sc0000388-1510915933:55649..55747Clytia hemisphaericaexon
TCONS_00021503-exon-sc0000388-1491911889:71670..71834TCONS_00021503-exon-sc0000388-1491911889:71670..71834Clytia hemisphaericaexon
TCONS_00021503-exon-sc0000388-1491911889:59450..59509TCONS_00021503-exon-sc0000388-1491911889:59450..59509Clytia hemisphaericaexon
TCONS_00021503-exon-sc0000388-1491911889:58599..58623TCONS_00021503-exon-sc0000388-1491911889:58599..58623Clytia hemisphaericaexon
TCONS_00021503-exon-sc0000388-1491911889:58429..58506TCONS_00021503-exon-sc0000388-1491911889:58429..58506Clytia hemisphaericaexon
TCONS_00021503-exon-sc0000388-1491911889:55953..56134TCONS_00021503-exon-sc0000388-1491911889:55953..56134Clytia hemisphaericaexon
TCONS_00021503-exon-sc0000388-1491911889:55649..55747TCONS_00021503-exon-sc0000388-1491911889:55649..55747Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021503-proteinTCONS_00021503-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000388supercontigsc0000388:55649..71834 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1263.09	1352.48	1444.03	1659.26	523.299	481.508	588.362	677.876	1759.55	1628.98	1946.18	2144.22	1449.14	1487.34	1536.56	1476.19	2158.75	2007.91	781.674	728.41	1691.77	1666.81	1226.46	1238.99	661.852	517.613	1931.4	1903.84	1118.85	1061.86
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000454ATP_synth_F0_csu
IPR002379ATPase_proteolipid_c-like_dom
IPR020537ATP_synth_F0_csu_DDCD_BS
Vocabulary: Cellular Component
TermDefinition
GO:0045263proton-transporting ATP synthase complex, coupling factor F(o)
GO:0033177proton-transporting two-sector ATPase complex, proton-transporting domain
Vocabulary: Biological Process
TermDefinition
GO:0015986ATP synthesis coupled proton transport
GO:0015991ATP hydrolysis coupled proton transport
Vocabulary: Molecular Function
TermDefinition
GO:0015078hydrogen ion transmembrane transporter activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0015986 ATP synthesis coupled proton transport
cellular_component GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain
molecular_function GO:0015078 hydrogen ion transmembrane transporter activity
Blast
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BLAST of TCONS_00021503 vs. Swiss-Prot (Human)
Match: AT5G2 (ATP synthase F(0) complex subunit C2, mitochondrial OS=Homo sapiens GN=ATP5G2 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.114e-33
Identity = 63/78 (80.77%), Postives = 66/78 (84.62%), Query Frame = 1 
Query:  214 PTTSAIVPSSGLHTSTANRDIEQAAKFIGAGAATVGCAGSGAGIGTVFGSLIIGYARNPSLKPQLFSYAILGFALSEA 447
            P TS +V S    TS  +RDI+ AAKFIGAGAATVG AGSGAGIGTVFGSLIIGYARNPSLK QLFSYAILGFALSEA
Sbjct:   49 PLTS-LVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 125
The following BLAST results are available for this feature:
BLAST of TCONS_00021503 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AT5G23.114e-3380.77ATP synthase F(0) complex subunit C2, mitochondria... [more]
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