|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021485 ID=TCONS_00021485|Name=TCONS_00021485|organism=Clytia hemisphaerica|type=transcript|length=1919bp
CTTCAATCACCGACCAATCAACAACGTAGTCACTCGTTACCAGCTCATTT
CAAACCAACACTCAATCACAGAGGCGTATCCAAATTACGTGAGACGGAAA
CTGACCATTCTGTATCGCGCTCCGCACAATATATAAGAAGCCTAAGTTTG
AATTATGGACGTCCAACACAGGAGGCTGGGCACAAGAAGTTTTCCTTGTC
TCCATTGGTAACGAATGAAGATCTGCAACAACGAGCCGTCATGCATTCAC
CCCATCAAGGCATCTGTGGTCAAACTTCTTCATGGCGTTTagttccatta
aaaaattcaAGCAACAGTAAAACAAACACAAACACACCTAAAGCTACATC
CTCTCATAACTATAACGCCAAACTGCCCGCGTGCACGTCGCGAAACCGCG
AAGGCACGCTACTCGAAGGTGAAAACATAACGATGAATAAGATTGAGGAG
TTCTTAGAAACTCGAGAACATATTGATAAAACAGAATTTGATATGGTTGT
CCGGAATCTTCTAGAGGAGACATCGGACGTTGGGTCTTCTGGTAGAATTC
AAACTCCAAAATCAAGTAATACGTCAAGTATCAATTCAAATTGCTCCTTT
CCGAAGTTCAACTCTTCCGGCTCTCATCACCAAAACAACCGAATGGTGCA
TACGGAAAACCGCTTCGTCGCCGCCCCTTATCATCCAGAACAAAGCAAAT
TTTACGGCAAAAACCGATTCTTCGAGCCAGCAGCATATGTACACTTGCCA
aacgtttcaagcaaaacaTCTAACAGCAAAAAAGGCCCCGAGAATCGGGT
TCTACAAAATTTGAAGGCCGAAGATCGTCGTGATAGTAGTTTTTCGAGTG
tggaaagtgaaaaaaaagGGCAAGCAACAGCCTCTACTCACGAATTTGTT
GAGAACGAGATTATTGGTACTGATTTTCTTATGGAAACATTCAACAACAG
CCAATCAGGTGAAAGTGAAAGTCACGCAAAAATAAAATCTCCTTCAACAA
ATTTGAACAACCCACCATCAAAAACTTCTTCCACTAACTTACAACCTAGT
TCGGTAAAAGGGCTACCTCCATTGGGTAGTTGTTCGCTTGTTACAAGGAC
CAATATCGGTCAATCTCAGCAGAAAAGACATTCGCTGCCCTCAACTGAAA
TAGTTGAATCATTAGAAGGGCACTCATCCGCAGGGTCGAAAAGGCGGCAT
TCTTTACAAGAGCCCGCTTGCCCTCATGAGACCAGAACGGAGGATTGTCG
ACGAGGTAAACGACCACCCTCTAGAGGAGGGCGGATCATAAAAGACTGGC
TTCAGAGAAAAACAAGTTTATAGGcttcattgaaattgttattGAATATA
CAATCATGAGAAAACTAAAGAAATCCAATGTTTTTTTCTACAAATCCCCC
TTTAACCCTTAACAAATGAGCATAATCTTTTTCCAAGGagtgtttttgtg
tttttatcatatttctataatttttaatggagttttgatattttgctgTT
TTCgtgttttcatataatttttatgaaacgtcaaaaatgatcagaaagca
gaATTAAGTAAGATAAGAAGTAGACTCTAGCCCCGGAGGAGGCACTCTGG
TGAAATTGGGAAAGGGACGTGCCACTGATCAGGGTTCCATTTTAAGGCTC
CGAAGACATCTGACAGTCCCAAACTTactaattttcaacatttgtacCTG
AAACATCTTctggttattttggacaattttaagggtttaaatttttcaat
cttttgtctacatttcgttatttttgccacttttcaggtgaaaatgggaa
ttttttttcgattttccttccgacagggtcccaaatataccaaattcata
tctgaccgggtccacttttcaaactccagtggcACGTCTCCGTTGGctgt
cagtgccccccccccccgg Run BLAST on NCBI protein sequence of TCONS_00021485-protein >TCONS_00021485-protein ID=TCONS_00021485-protein|Name=TCONS_00021485-protein|organism=Clytia hemisphaerica|type=polypeptide|length=440bp
LQSPTNQQRSHSLPAHFKPTLNHRGVSKLRETETDHSVSRSAQYIRSLSL
NYGRPTQEAGHKKFSLSPLVTNEDLQQRAVMHSPHQGICGQTSSWRLVPL
KNSSNSKTNTNTPKATSSHNYNAKLPACTSRNREGTLLEGENITMNKIEE
FLETREHIDKTEFDMVVRNLLEETSDVGSSGRIQTPKSSNTSSINSNCSF
PKFNSSGSHHQNNRMVHTENRFVAAPYHPEQSKFYGKNRFFEPAAYVHLP
NVSSKTSNSKKGPENRVLQNLKAEDRRDSSFSSVESEKKGQATASTHEFV
ENEIIGTDFLMETFNNSQSGESESHAKIKSPSTNLNNPPSKTSSTNLQPS
SVKGLPPLGSCSLVTRTNIGQSQQKRHSLPSTEIVESLEGHSSAGSKRRH
SLQEPACPHETRTEDCRRGKRPPSRGGRIIKDWLQRKTSL Run BLAST on NCBI transcript from alignment at sc0000388:20459..22888+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021485 ID=TCONS_00021485|Name=TCONS_00021485|organism=Clytia hemisphaerica|type=transcript|length=2430bp|location=Sequence derived from alignment at sc0000388:20459..22888+ (Clytia hemisphaerica)
CTTCAATCACCGACCAATCAACAACGTAGTCACTCGTTACCAGCTCATTT
CAAACCAACACTCAATCACAGAGGCGTATCCAAATTACGTGAGACGGAAA
CTGACCATTCTGTATCGCGCTCCGCACAATATATAAGAAGCCTAAGTTTG
AATTATGGACGTCCAACACAGGAGGCTGGGCACAAGAAGTTTTCCTTGTC
TCCATTGGTAACGAATGAAGATCTGCAACAACGAGCCGTCATGCATTCAC
CCCATCAAGGTAAAGTTtccttcttttaaatttttatatcaTACACTAAG
GACCAGGAAATTGATACGAAAAAGACCCTTTGTtcggtcttcaaaatcaa
atccTTTATAACAAGGAATCAAACTTGAAAGAAACCAAATATCAATCAAA
ATAAATCTATTTGGTTTTTCAGGCATCTGTGGTCAAACTTCTTCATGGCG
TTTagttccattaaaaaattcaAGCAACAGTAAAACAAACACAAACACAC
CTAAAGCTACATCCTCTCATAACTATAACGCCAAACTGCCCGCGTGCACG
TCGCGAAACCGCGAAGGCACGCTACTCGAAGGTGAAAACATAACGATGAA
TAAGATTGAGGAGTTCTTAGAAACTCGAGAACATATTGATAAAACAGAAT
TTGATATGGTTGTCCGGAATCTTCTAGAGGAGACATCGGACGTTGGGTCT
TCTGGTAGAATTCAAACTCCAAAATCAAGTAATACGTCAAGTATCAATTC
AAATTGCTCCTTTCCGAAGTTCAACTCTTCCGGCTCTCATCACCAAAACA
ACCGAATGGTGCATACGGAAAACCGCTTCGTCGCCGCCCCTTATCATCCA
GAACAAAGCAAATTTTACGGCAAAAACCGATTCTTCGAGCCAGCAGCATA
TGTACACTTGCCAaacgtttcaagcaaaacaTCTAACAGCAAAAAAGGCC
CCGAGAATCGGGTTCTACAAAATTTGAAGGCCGAAGATCGTCGTGATAGT
AGTTTTTCGAGTGtggaaagtgaaaaaaaaggtNATTTGAAGGCCGAAGA
TCGTCGCGATAGTAGTTTTTCGAGTGtggaaagtgaaaaaaaaggtatct
ttaaaaaagcttttttgaatgttttgtagTGTAGATTTACTGATAAACAT
AATGTAGATACTTGTCCTAAATCACTCCTGCTTCACAGATGCATATTCAA
ATACTCTGTGcgcatattttttttgaatttacaaAACTGTTTATTCTTAA
CCCTTACACCGTTTTAATgctttgatttttctgaaattcaaaattcaatt
caacGGTCTTTGATTCAAGagaattttttgcatttatACGTTATCACATT
TTCATTATTGCTCCATTATTCCACTTCAGGGCAAGCAACAGCCTCTACTC
ACGAATTTGTTGAGAACGAGATTATTGGTACTGATTTTCTTATGGAAACA
TTCAACAACAGCCAATCAGGTGAAAGTGAAAGTCACGCAAAAATAAAATC
TCCTTCAACAAATTTGAACAACCCACCATCAAAAACTTCTTCCACTAACT
TACAACCTAGTTCGGTAAAAGGGCTACCTCCATTGGGTAGTTGTTCGCTT
GTTACAAGGACCAATATCGGTCAATCTCAGCAGAAAAGACATTCGCTGCC
CTCAACTGAAATAGTTGAATCATTAGAAGGGCACTCATCCGCAGGGTCGA
AAAGGCGGCATTCTTTACAAGAGCCCGCTTGCCCTCATGAGACCAGAACG
GAGGATTGTCGACGAGGTAAACGACCACCCTCTAGAGGAGGGCGGATCAT
AAAAGACTGGCTTCAGAGAAAAACAAGTTTATAGGcttcattgaaattgt
tattGAATATACAATCATGAGAAAACTAAAGAAATCCAATGTTTTTTTCT
ACAAATCCCCCTTTAACCCTTAACAAATGAGCATAATCTTTTTCCAAGGa
gtgtttttgtgtttttatcatatttctataatttttaatggagttttgat
attttgctgTTTTCgtgttttcatataatttttatgaaacgtcaaaaatg
atcagaaagcagaATTAAGTAAGATAAGAAGTAGACTCTAGCCCCGGAGG
AGGCACTCTGGTGAAATTGGGAAAGGGACGTGCCACTGATCAGGGTTCCA
TTTTAAGGCTCCGAAGACATCTGACAGTCCCAAACTTactaattttcaac
atttgtacCTGAAACATCTTctggttattttggacaattttaagggttta
aatttttcaatcttttgtctacatttcgttatttttgccacttttcaggt
gaaaatgggaattttttttcgattttccttccgacagggtcccaaatata
ccaaattcatatctgaccgggtccacttttcaaactccagtggcACGTCT
CCGTTGGctgtcagtgccccccccccccgg Coding sequence (CDS) from alignment at sc0000388:20459..22888+ >TCONS_00021485 ID=TCONS_00021485|Name=TCONS_00021485|organism=Clytia hemisphaerica|type=CDS|length=3969bp|location=Sequence derived from alignment at sc0000388:20459..22888+ (Clytia hemisphaerica)
CTTCAATCACCGACCAATCAACAACGTAGTCACTCGTTACCAGCTCATTT
CAAACCAACACTCAATCACAGAGGCGTATCCAAATTACGTGAGACGGAAA
CTGACCATTCTGTATCGCGCTCCGCACAATATATAAGAAGCCTAAGTTTG
AATTATGGACGTCCAACACAGGAGGCTGGGCACAAGAAGTTTTCCTTGTC
TCCATTGGTAACGAATGAAGATCTGCAACAACGAGCCGTCATGCATTCAC
CCCATCAAGGCATCTGTGGTCAAACTTCTTCATGGCGTTTagttccatta
aaaaattcaAGCAACAGTAAAACAAACACAAACACACCTAAAGCTACATC
CTCTCATAACTATAACGCCAAACTGCCCGCGTGCACGTCGCGAAACCGCG
AAGGCACGCTACTCGAAGGTGAAAACATAACGATGAATAAGATTGAGGAG
TTCTTAGAAACTCGAGAACATATTGATAAAACAGAATTTGATATGGTTGT
CCGGAATCTTCTAGAGGAGACATCGGACGTTGGGTCTTCTGGTAGAATTC
AAACTCCAAAATCAAGTAATACGTCAAGTATCAATTCAAATTGCTCCTTT
CCGAAGTTCAACTCTTCCGGCTCTCATCACCAAAACAACCGAATGGTGCA
TACGGAAAACCGCTTCGTCGCCGCCCCTTATCATCCAGAACAAAGCAAAT
TTTACGGCAAAAACCGATTCTTCGAGCCAGCAGCATATGTACACTTGCCA
aacgtttcaagcaaaacaTCTAACAGCAAAAAAGGCCCCGAGAATCGGGT
TCTACAAAATTTGAAGGCCGAAGATCGTCGTGATAGTAGTTTTTCGAGTG
tggaaagtgaaaaaaaagGGCAAGCAACAGCCTCTACTCACGAATTTGTT
GAGAACGAGATTATTGGTACTGATTTTCTTATGGAAACATTCAACAACAG
CCAATCAGGTGAAAGTGAAAGTCACGCAAAAATAAAATCTCCTTCAACAA
ATTTGAACAACCCACCATCAAAAACTTCTTCCACTAACTTACAACCTAGT
TCGGTAAAAGGGCTACCTCCATTGGGTAGTTGTTCGCTTGTTACAAGGAC
CAATATCGGTCAATCTCAGCAGAAAAGACATTCGCTGCCCTCAACTGAAA
TAGTTGAATCATTAGAAGGGCACTCATCCGCAGGGTCGAAAAGGCGGCAT
TCTTTACAAGAGCCCGCTTGCCCTCATGAGACCAGAACGGAGGATTGTCG
ACGAGGTAAACGACCACCCTCTAGAGGAGGGCGGATCATAAAAGACTGGC
TTCAGAGAAAAACAAGTTTATAGCTTCAATCACCGACCAATCAACAACGT
AGTCACTCGTTACCAGCTCATTTCAAACCAACACTCAATCACAGAGGCGT
ATCCAAATTACGTGAGACGGAAACTGACCATTCTGTATCGCGCTCCGCAC
AATATATAAGAAGCCTAAGTTTGAATTATGGACGTCCAACACAGGAGGCT
GGGCACAAGAAGTTTTCCTTGTCTCCATTGGTAACGAATGAAGATCTGCA
ACAACGAGCCGTCATGCATTCACCCCATCAAGGCATCTGTGGTCAAACTT
CTTCATGGCGTTTagttccattaaaaaattcaAGCAACAGTAAAACAAAC
ACAAACACACCTAAAGCTACATCCTCTCATAACTATAACGCCAAACTGCC
CGCGTGCACGTCGCGAAACCGCGAAGGCACGCTACTCGAAGGTGAAAACA
TAACGATGAATAAGATTGAGGAGTTCTTAGAAACTCGAGAACATATTGAT
AAAACAGAATTTGATATGGTTGTCCGGAATCTTCTAGAGGAGACATCGGA
CGTTGGGTCTTCTGGTAGAATTCAAACTCCAAAATCAAGTAATACGTCAA
GTATCAATTCAAATTGCTCCTTTCCGAAGTTCAACTCTTCCGGCTCTCAT
CACCAAAACAACCGAATGGTGCATACGGAAAACCGCTTCGTCGCCGCCCC
TTATCATCCAGAACAAAGCAAATTTTACGGCAAAAACCGATTCTTCGAGC
CAGCAGCATATGTACACTTGCCAaacgtttcaagcaaaacaTCTAACAGC
AAAAAAGGCCCCGAGAATCGGGTTCTACAAAATTTGAAGGCCGAAGATCG
TCGTGATAGTAGTTTTTCGAGTGtggaaagtgaaaaaaaagGGCAAGCAA
CAGCCTCTACTCACGAATTTGTTGAGAACGAGATTATTGGTACTGATTTT
CTTATGGAAACATTCAACAACAGCCAATCAGGTGAAAGTGAAAGTCACGC
AAAAATAAAATCTCCTTCAACAAATTTGAACAACCCACCATCAAAAACTT
CTTCCACTAACTTACAACCTAGTTCGGTAAAAGGGCTACCTCCATTGGGT
AGTTGTTCGCTTGTTACAAGGACCAATATCGGTCAATCTCAGCAGAAAAG
ACATTCGCTGCCCTCAACTGAAATAGTTGAATCATTAGAAGGGCACTCAT
CCGCAGGGTCGAAAAGGCGGCATTCTTTACAAGAGCCCGCTTGCCCTCAT
GAGACCAGAACGGAGGATTGTCGACGAGGTAAACGACCACCCTCTAGAGG
AGGGCGGATCATAAAAGACTGGCTTCAGAGAAAAACAAGTTTATAGCTTC
AATCACCGACCAATCAACAACGTAGTCACTCGTTACCAGCTCATTTCAAA
CCAACACTCAATCACAGAGGCGTATCCAAATTACGTGAGACGGAAACTGA
CCATTCTGTATCGCGCTCCGCACAATATATAAGAAGCCTAAGTTTGAATT
ATGGACGTCCAACACAGGAGGCTGGGCACAAGAAGTTTTCCTTGTCTCCA
TTGGTAACGAATGAAGATCTGCAACAACGAGCCGTCATGCATTCACCCCA
TCAAGGCATCTGTGGTCAAACTTCTTCATGGCGTTTagttccattaaaaa
attcaAGCAACAGTAAAACAAACACAAACACACCTAAAGCTACATCCTCT
CATAACTATAACGCCAAACTGCCCGCGTGCACGTCGCGAAACCGCGAAGG
CACGCTACTCGAAGGTGAAAACATAACGATGAATAAGATTGAGGAGTTCT
TAGAAACTCGAGAACATATTGATAAAACAGAATTTGATATGGTTGTCCGG
AATCTTCTAGAGGAGACATCGGACGTTGGGTCTTCTGGTAGAATTCAAAC
TCCAAAATCAAGTAATACGTCAAGTATCAATTCAAATTGCTCCTTTCCGA
AGTTCAACTCTTCCGGCTCTCATCACCAAAACAACCGAATGGTGCATACG
GAAAACCGCTTCGTCGCCGCCCCTTATCATCCAGAACAAAGCAAATTTTA
CGGCAAAAACCGATTCTTCGAGCCAGCAGCATATGTACACTTGCCAaacg
tttcaagcaaaacaTCTAACAGCAAAAAAGGCCCCGAGAATCGGGTTCTA
CAAAATTTGAAGGCCGAAGATCGTCGTGATAGTAGTTTTTCGAGTGtgga
aagtgaaaaaaaagGGCAAGCAACAGCCTCTACTCACGAATTTGTTGAGA
ACGAGATTATTGGTACTGATTTTCTTATGGAAACATTCAACAACAGCCAA
TCAGGTGAAAGTGAAAGTCACGCAAAAATAAAATCTCCTTCAACAAATTT
GAACAACCCACCATCAAAAACTTCTTCCACTAACTTACAACCTAGTTCGG
TAAAAGGGCTACCTCCATTGGGTAGTTGTTCGCTTGTTACAAGGACCAAT
ATCGGTCAATCTCAGCAGAAAAGACATTCGCTGCCCTCAACTGAAATAGT
TGAATCATTAGAAGGGCACTCATCCGCAGGGTCGAAAAGGCGGCATTCTT
TACAAGAGCCCGCTTGCCCTCATGAGACCAGAACGGAGGATTGTCGACGA
GGTAAACGACCACCCTCTAGAGGAGGGCGGATCATAAAAGACTGGCTTCA
GAGAAAAACAAGTTTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021485-exon-sc0000388-1491911889:20459..20717 | TCONS_00021485-exon-sc0000388-1491911889:20459..20717 | Clytia hemisphaerica | exon |
| TCONS_00021485-exon-sc0000388-1510915933:20459..20717 | TCONS_00021485-exon-sc0000388-1510915933:20459..20717 | Clytia hemisphaerica | exon |
| TCONS_00021485-exon-sc0000388-1575043694:20459..20717 | TCONS_00021485-exon-sc0000388-1575043694:20459..20717 | Clytia hemisphaerica | exon |
| TCONS_00021485-exon-sc0000388-1491911889:20881..21489 | TCONS_00021485-exon-sc0000388-1491911889:20881..21489 | Clytia hemisphaerica | exon |
| TCONS_00021485-exon-sc0000388-1510915933:20881..21489 | TCONS_00021485-exon-sc0000388-1510915933:20881..21489 | Clytia hemisphaerica | exon |
| TCONS_00021485-exon-sc0000388-1575043694:20881..21489 | TCONS_00021485-exon-sc0000388-1575043694:20881..21489 | Clytia hemisphaerica | exon |
| TCONS_00021485-exon-sc0000388-1491911889:21838..22888 | TCONS_00021485-exon-sc0000388-1491911889:21838..22888 | Clytia hemisphaerica | exon |
| TCONS_00021485-exon-sc0000388-1510915933:21838..22888 | TCONS_00021485-exon-sc0000388-1510915933:21838..22888 | Clytia hemisphaerica | exon |
| TCONS_00021485-exon-sc0000388-1575043694:21838..22888 | TCONS_00021485-exon-sc0000388-1575043694:21838..22888 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000388 | supercontig | sc0000388:20459..22888 + |
Blast
The following BLAST results are available for this feature:
|
