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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021475 ID=TCONS_00021475|Name=TCONS_00021475|organism=Clytia hemisphaerica|type=transcript|length=1181bp
TTTCCAAGTATCATATCGTCAATCAGGAGTTGTTCTACGGTTCCTTGGTT
TCCTGAGATACCACCTTTTTGCTCTTCAGGGAGTAGATTGAAGGTGTCGA
GATGAGACTTCGTCCCTTTTGTGATTATACTTGTCATTATTTTGTATGTG
ATCGGCAAGCAAGTGATGGGTCTGTAGTTCGATGGGATCTCGGTTTGTGG
TTTCTTAGGTACGAGTGTTGTTCTGCCCGTGGTGAACCATTCAGGAATTG
ATTGTGGATTATCGACCATTGCGTTGTACACGATCGTTTTCTGATCGTAG
ATGGAGTTAAACTTGTTCCACCAGAAGTTTTGCAAGCTGTCAACACCGGG
GCTTTTCCAGTTGGCAAAGTTTTTAATAGCCTCCgatatttgttgttgtt
gtatgtTGATGGTTTCTTCGTATTCAGCGATCCACGGTGCTTGGTCGTTG
TAATTTGCTTCGGTACCTAGGATTGGTCGCCAGAAGTTTTCGATTTCTTG
CTTTGACGTTGATTTGTCGATTGGAATGCTGGTACCTCTCAAGCTCTTGT
AGAATTTATCAGGGCTGTTGACGCAGTCTCTGTTTTCTGTGTACTGTTTT
GCTCTTGACTTGTAGCGCTTAAGTCGGTTGTTTTTTGCAAGAAGTGTTTG
TTTCAGACGTCGTTCGTTGTTGATGTTGTGTTTTCGTCTGAGACGgtcgt
tgttttttttcatttttgtcgaTGGGTTGTCTGCGTTCATCTGTTCGACT
TGGCTGATTTCCTTGCGGATTTCGAGGATTTTTGAATCAAGAAGTTTGAC
CCATGCTTGTTTCCTTTTTGATGCTTCTTTGTTGGTTATGATACATTGTT
TTCGTAGATTGGCGTGTTCTATCGCAGTAAGTGCAAACGCATACGTCATG
TCGTTGATTTGTGAGATGTCGTTGCATTGATGGcgattgacgtcaattat
ttcgtTAACAATGTCACAGCTtcgtgaaagttttttcaaatcaaatttcg
ATGGTTTCCgaaatttttcccttttttcaaaaggagtcaattttgaaatg
ataaaatgttCTTCAAATCTTGTTTGAATGTTTTCCCCATCGTCTCCTTG
AACTCTGATGACATTTCCTTCTTCTGGGACGTTATTTGCGGCCTGCATGA
TCTCGTTTTGGGCGTTTTGTTCGTCTTGATC Run BLAST on NCBI protein sequence of TCONS_00021475-protein >TCONS_00021475-protein ID=TCONS_00021475-protein|Name=TCONS_00021475-protein|organism=Clytia hemisphaerica|type=polypeptide|length=393bp
DQDEQNAQNEIMQAANNVPEEGNVIRVQGDDGENIQTRFEEHFIISKLTP
FEKREKFRKPSKFDLKKLSRSCDIVNEIIDVNRHQCNDISQINDMTYAFA
LTAIEHANLRKQCIITNKEASKRKQAWVKLLDSKILEIRKEISQVEQMNA
DNPSTKMKKNNDRLRRKHNINNERRLKQTLLAKNNRLKRYKSRAKQYTEN
RDCVNSPDKFYKSLRGTSIPIDKSTSKQEIENFWRPILGTEANYNDQAPW
IAEYEETINIQQQQISEAIKNFANWKSPGVDSLQNFWWNKFNSIYDQKTI
VYNAMVDNPQSIPEWFTTGRTTLVPKKPQTEIPSNYRPITCLPITYKIMT
SIITKGTKSHLDTFNLLPEEQKGGISGNQGTVEQLLIDDMILG Run BLAST on NCBI transcript from alignment at sc0000386:185198..186378 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021475 ID=TCONS_00021475|Name=TCONS_00021475|organism=Clytia hemisphaerica|type=transcript|length=1181bp|location=Sequence derived from alignment at sc0000386:185198..186378 (Clytia hemisphaerica)
GATCAAGACGAACAAAACGCCCAAAACGAGATCATGCAGGCCGCAAATAA
CGTCCCAGAAGAAGGAAATGTCATCAGAGTTCAAGGAGACGATGGGGAAA
ACATTCAAACAAGATTTGAAGaacattttatcatttcaaaattgactcct
tttgaaaaaagggaaaaatttcGGAAACCATcgaaatttgatttgaaaaa
actttcacgaAGCTGTGACATTGTTAacgaaataattgacgtcaatcgCC
ATCAATGCAACGACATCTCACAAATCAACGACATGACGTATGCGTTTGCA
CTTACTGCGATAGAACACGCCAATCTACGAAAACAATGTATCATAACCAA
CAAAGAAGCATCAAAAAGGAAACAAGCATGGGTCAAACTTCTTGATTCAA
AAATCCTCGAAATCCGCAAGGAAATCAGCCAAGTCGAACAGATGAACGCA
GACAACCCAtcgacaaaaatgaaaaaaaacaacgacCGTCTCAGACGAAA
ACACAACATCAACAACGAACGACGTCTGAAACAAACACTTCTTGCAAAAA
ACAACCGACTTAAGCGCTACAAGTCAAGAGCAAAACAGTACACAGAAAAC
AGAGACTGCGTCAACAGCCCTGATAAATTCTACAAGAGCTTGAGAGGTAC
CAGCATTCCAATCGACAAATCAACGTCAAAGCAAGAAATCGAAAACTTCT
GGCGACCAATCCTAGGTACCGAAGCAAATTACAACGACCAAGCACCGTGG
ATCGCTGAATACGAAGAAACCATCAacatacaacaacaacaaatatcGGA
GGCTATTAAAAACTTTGCCAACTGGAAAAGCCCCGGTGTTGACAGCTTGC
AAAACTTCTGGTGGAACAAGTTTAACTCCATCTACGATCAGAAAACGATC
GTGTACAACGCAATGGTCGATAATCCACAATCAATTCCTGAATGGTTCAC
CACGGGCAGAACAACACTCGTACCTAAGAAACCACAAACCGAGATCCCAT
CGAACTACAGACCCATCACTTGCTTGCCGATCACATACAAAATAATGACA
AGTATAATCACAAAAGGGACGAAGTCTCATCTCGACACCTTCAATCTACT
CCCTGAAGAGCAAAAAGGTGGTATCTCAGGAAACCAAGGAACCGTAGAAC
AACTCCTGATTGACGATATGATACTTGGAAA Coding sequence (CDS) from alignment at sc0000386:185198..186378 >TCONS_00021475 ID=TCONS_00021475|Name=TCONS_00021475|organism=Clytia hemisphaerica|type=CDS|length=1179bp|location=Sequence derived from alignment at sc0000386:185198..186378 (Clytia hemisphaerica)
GATCAAGACGAACAAAACGCCCAAAACGAGATCATGCAGGCCGCAAATAA
CGTCCCAGAAGAAGGAAATGTCATCAGAGTTCAAGGAGACGATGGGGAAA
ACATTCAAACAAGATTTGAAGaacattttatcatttcaaaattgactcct
tttgaaaaaagggaaaaatttcGGAAACCATcgaaatttgatttgaaaaa
actttcacgaAGCTGTGACATTGTTAacgaaataattgacgtcaatcgCC
ATCAATGCAACGACATCTCACAAATCAACGACATGACGTATGCGTTTGCA
CTTACTGCGATAGAACACGCCAATCTACGAAAACAATGTATCATAACCAA
CAAAGAAGCATCAAAAAGGAAACAAGCATGGGTCAAACTTCTTGATTCAA
AAATCCTCGAAATCCGCAAGGAAATCAGCCAAGTCGAACAGATGAACGCA
GACAACCCAtcgacaaaaatgaaaaaaaacaacgacCGTCTCAGACGAAA
ACACAACATCAACAACGAACGACGTCTGAAACAAACACTTCTTGCAAAAA
ACAACCGACTTAAGCGCTACAAGTCAAGAGCAAAACAGTACACAGAAAAC
AGAGACTGCGTCAACAGCCCTGATAAATTCTACAAGAGCTTGAGAGGTAC
CAGCATTCCAATCGACAAATCAACGTCAAAGCAAGAAATCGAAAACTTCT
GGCGACCAATCCTAGGTACCGAAGCAAATTACAACGACCAAGCACCGTGG
ATCGCTGAATACGAAGAAACCATCAacatacaacaacaacaaatatcGGA
GGCTATTAAAAACTTTGCCAACTGGAAAAGCCCCGGTGTTGACAGCTTGC
AAAACTTCTGGTGGAACAAGTTTAACTCCATCTACGATCAGAAAACGATC
GTGTACAACGCAATGGTCGATAATCCACAATCAATTCCTGAATGGTTCAC
CACGGGCAGAACAACACTCGTACCTAAGAAACCACAAACCGAGATCCCAT
CGAACTACAGACCCATCACTTGCTTGCCGATCACATACAAAATAATGACA
AGTATAATCACAAAAGGGACGAAGTCTCATCTCGACACCTTCAATCTACT
CCCTGAAGAGCAAAAAGGTGGTATCTCAGGAAACCAAGGAACCGTAGAAC
AACTCCTGATTGACGATATGATACTTGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021475-exon-sc0000386-1491911889:185198..186378 | TCONS_00021475-exon-sc0000386-1491911889:185198..186378 | Clytia hemisphaerica | exon |
| TCONS_00021475-exon-sc0000386-1510915933:185198..186378 | TCONS_00021475-exon-sc0000386-1510915933:185198..186378 | Clytia hemisphaerica | exon |
| TCONS_00021475-exon-sc0000386-1575043694:185198..186378 | TCONS_00021475-exon-sc0000386-1575043694:185198..186378 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000386 | supercontig | sc0000386:185198..186378 . |
Blast
The following BLAST results are available for this feature:
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