TCONS_00021470 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021470
Unique NameTCONS_00021470
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length331

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021470 ID=TCONS_00021470|Name=TCONS_00021470|organism=Clytia hemisphaerica|type=transcript|length=331bp
tttaaattcaaatttgaaggGGAGTGGCTTCGAGCAGTGTGTTTGGACAA
AATCCGCCATCATGATCATGATGACTTAAGTTCGGACAACAACACGGAAA
ATATTAACAATACGGAAACGACCAATACGGAAAACATCCAGGATACGGAC
GATCGAGAAGTAGATAACGAAAACGAAACTGAAAAGAACAACGAAGGCGA
AAAGAACAACGAAACTGAAAAGAACAACGAAACTGAAAAGAACAACGAAA
CTGAAAAGAACAACGAAACTGAAAAGAACAACGAAACTGAAAAGAACAAC
GAAACTGAAAAGAACAACGAAACTGAAAAGA
Run BLAST on NCBI

protein sequence of TCONS_00021470-protein

>TCONS_00021470-protein ID=TCONS_00021470-protein|Name=TCONS_00021470-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
FKFKFEGEWLRAVCLDKIRHHDHDDLSSDNNTENINNTETTNTENIQDTD
DREVDNENETEKNNEGEKNNETEKNNETEKNNETEKNNETEKNNETEKNN
ETEKNNETEK
Run BLAST on NCBI

transcript from alignment at sc0000386:15923..16253

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021470 ID=TCONS_00021470|Name=TCONS_00021470|organism=Clytia hemisphaerica|type=transcript|length=331bp|location=Sequence derived from alignment at sc0000386:15923..16253 (Clytia hemisphaerica)
TCTTTTCAGTTTCGTTGTTCTTTTCAGTTTCGTTGTTCTTTTCAGTTTCG
TTGTTCTTTTCAGTTTCGTTGTTCTTTTCAGTTTCGTTGTTCTTTTCAGT
TTCGTTGTTCTTTTCAGTTTCGTTGTTCTTTTCGCCTTCGTTGTTCTTTT
CAGTTTCGTTTTCGTTATCTACTTCTCGATCGTCCGTATCCTGGATGTTT
TCCGTATTGGTCGTTTCCGTATTGTTAATATTTTCCGTGTTGTTGTCCGA
ACTTAAGTCATCATGATCATGATGGCGGATTTTGTCCAAACACACTGCTC
GAAGCCACTCCccttcaaatttgaatttaaa

Coding sequence (CDS) from alignment at sc0000386:15923..16253

>TCONS_00021470 ID=TCONS_00021470|Name=TCONS_00021470|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at sc0000386:15923..16253 (Clytia hemisphaerica)
CTTTTCAGTTTCGTTGTTCTTTTCAGTTTCGTTGTTCTTTTCAGTTTCGT
TGTTCTTTTCAGTTTCGTTGTTCTTTTCAGTTTCGTTGTTCTTTTCAGTT
TCGTTGTTCTTTTCAGTTTCGTTGTTCTTTTCGCCTTCGTTGTTCTTTTC
AGTTTCGTTTTCGTTATCTACTTCTCGATCGTCCGTATCCTGGATGTTTT
CCGTATTGGTCGTTTCCGTATTGTTAATATTTTCCGTGTTGTTGTCCGAA
CTTAAGTCATCATGATCATGATGGCGGATTTTGTCCAAACACACTGCTCG
AAGCCACTCCccttcaaatttgaatttaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012036XLOC_012036Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021470-exon-sc0000386-1491911889:15923..16253TCONS_00021470-exon-sc0000386-1491911889:15923..16253Clytia hemisphaericaexon
TCONS_00021470-exon-sc0000386-1510915933:15923..16253TCONS_00021470-exon-sc0000386-1510915933:15923..16253Clytia hemisphaericaexon
TCONS_00021470-exon-sc0000386-1575043694:15923..16253TCONS_00021470-exon-sc0000386-1575043694:15923..16253Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021470-proteinTCONS_00021470-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000386supercontigsc0000386:15923..16253 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.16317	1.98499	0	0	0	0	0	0	0	0	0.775897	0	0	1.20507	0	0	0	0	0	0	0	0	0.666836	0.303125	0	0	0	0	0.322758	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021470 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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