TCONS_00021468 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021468
Unique NameTCONS_00021468
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length494

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021468 ID=TCONS_00021468|Name=TCONS_00021468|organism=Clytia hemisphaerica|type=transcript|length=494bp
CTTTTGCCTCGATGGCTGCAATATGTGATAAACTTACTATAGAATTTATT
GAAAGCGTCCACTATGAATTTGAAGTTGTGTGTCACATTATTGATAATCG
AGGCTAGACAAGAAGCCGAGCATTGTACGACCGCTTGTGATTGCTTTAAC
ATTAGTTTCATCGAATCTTCCTCCAACTCCGCAAGGAATTTCGGGTTCGG
GTGCTCCATTAATGGAACAATGAGTTCTAATATCTTACAAACGTTCTGCG
TTATAATAGTGTCGTTCTGTGAATTGATTTTGGACGTTAGGTAGGGTGAA
AGTGTGGAGCCGTGTGGAACGAGAAGTTTGGGGGATGATTTGCAGAACAG
GTAGAGAGTTAAGAGACAAGAATTGATGGTTGTTGGACTTGATTTGAGTT
CTGGTTTGAGGATTTGTTGGACAAGACAATTGACGAGTTGTTGGCATGCT
TTGATAGTGATTTGACGTGATTGTTGGTTCTCGGGATCGAATAA
Run BLAST on NCBI

transcript from alignment at sc0000386:262486..263100-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021468 ID=TCONS_00021468|Name=TCONS_00021468|organism=Clytia hemisphaerica|type=transcript|length=615bp|location=Sequence derived from alignment at sc0000386:262486..263100- (Clytia hemisphaerica)
CTTTTGCCTCGATGGCTGCAATATGTGATAAACTTACTATAGAATTTATT
GAAAGCGTCCACTATGAATTTGAAGTTGTGTGTCACATTATTGATAATCG
AGGCTAGACAAGAAGCCGAGCATTGTACGACCGCTTGTGATTGCTTTAAC
ATTAGTTTCATCGAATCTTCCTCCAACTCCGCAAGGAATTTCGGGTTCGG
GTGCTCCATTAATGGAACAATGAGTTCTAATATCTTACAAACGTTCTGCG
TTATAATAGTGTCGTTCTGTGAATTGATTTTGGACGTTAGGTAGGGTGAA
AGTGTGGAGCCGTGTGGAACGAGAAGTTTGGGGGATGATTTGCAGAACAG
GTANTTTACAAACGTTCTGTGTTATAATAGTGTCGTTCTGTGAATTGATT
TTGGACGTTAGGTAGGGTGAAAGTGTGGAGCCGTGTGGAACGAGAAGTCT
CGGGTATGATTTGCAGAATAGGTAGAGAGTTAAGAGACAAGAATTGATGG
TTGTTGGACTTGATTTGAGTTCTGGTTTGAGGATTTGTTGGACAAGACAA
TTGACGAGTTGTTGGCATGCTTTGATAGTGATTTGACGTGATTGTTGGTT
CTCGGGATCGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012034XLOC_012034Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021468-exon-sc0000386-1575043694:262751..263100TCONS_00021468-exon-sc0000386-1575043694:262751..263100Clytia hemisphaericaexon
TCONS_00021468-exon-sc0000386-1575043694:262486..262629TCONS_00021468-exon-sc0000386-1575043694:262486..262629Clytia hemisphaericaexon
TCONS_00021468-exon-sc0000386-1510915933:262751..263100TCONS_00021468-exon-sc0000386-1510915933:262751..263100Clytia hemisphaericaexon
TCONS_00021468-exon-sc0000386-1510915933:262486..262629TCONS_00021468-exon-sc0000386-1510915933:262486..262629Clytia hemisphaericaexon
TCONS_00021468-exon-sc0000386-1491911889:262751..263100TCONS_00021468-exon-sc0000386-1491911889:262751..263100Clytia hemisphaericaexon
TCONS_00021468-exon-sc0000386-1491911889:262486..262629TCONS_00021468-exon-sc0000386-1491911889:262486..262629Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000386supercontigsc0000386:262486..263100 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.264194	0.693105	0.0931325	0	0.000358332	1.80434	2.40907	1.65078	0.731485	1.29075	0	0.32159	1.65406	0	0.262825	0.53844	1.38088	1.87094	0.259227	0.266451	2.06456	0.747371	0.89783	1.76592	0	0	1.04242	0.271349	0.645581	0.993203
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
Blast
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BLAST of TCONS_00021468 vs. Swiss-Prot (Human)
Match: NIPBL (Nipped-B-like protein OS=Homo sapiens GN=NIPBL PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.089e-38
Identity = 77/161 (47.83%), Postives = 102/161 (63.35%), Query Frame = -1 
Query:   36 LFDPENQQSRQITIKACQQLVNCLVQQILKPE---LKSSPTTINS-----CLLTLYLFCKSSPKLLVPHGSTLSPYLTSKINSQNDTIITQNVCKILELIVPLMEHPNPKFLAELEEDSMKLMLKQSQAVVQCSASCLASIINNVTHNFKFIVDAFNKFYS 494
            L   E   S +   KAC QLV+ LV+ ILK E     S    +NS     C+ TL+LF K  P+L+V H  T+ PYLT+K ++QND ++  NV KILEL+VPLMEHP+  FLA +EED MKL++K    VVQ   SCL +++N VT NFKF+   FN++Y 
Sbjct: 1955 LLKSEEDSSYKPVKKACTQLVDNLVEHILKYEESLADSDNKGVNSGRLVACITTLFLFSKIRPQLMVKHAMTMQPYLTTKCSTQNDFMVICNVAKILELVVPLMEHPSETFLATIEEDLMKLIIKYGMTVVQHCVSCLGAVVNKVTQNFKFVWACFNRYYG 2115
The following BLAST results are available for this feature:
BLAST of TCONS_00021468 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NIPBL1.089e-3847.83Nipped-B-like protein OS=Homo sapiens GN=NIPBL PE=... [more]
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