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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021462 ID=TCONS_00021462|Name=TCONS_00021462|organism=Clytia hemisphaerica|type=transcript|length=1984bp
NttttttttcattttttctatgtACCATTACTTCACTCTAACAAGGTTAA
TTAATACATATTTGTAGAAGAGAACAGGATCACGAAAAAAGATGAGACTT
GTCTTACTATCTATTGTATTTATAccaaattttgtattttgtcaAATCAC
AAGGCTGTCACAATGCGACAAATACGGGGCAACTTTCAAGGTCtcaaaac
gaaaaataaaagatCGCGGCAATGAATCAAATGGTCGACTAAGCGAGGAG
TTAgatgtaaaatcgaaagagagaTGCAGCACTCTGTGCATTGAAAACGC
AACATGCAAATCAGCATTTTATAAGTCAGACAAACGCAAATGCCATCTGT
ATGATAAGAAGTTTGACGAGAGCGAATTAGTGGAAGATCGGAACGGGGCA
TATTATTTGTGGATGGACGGCAAAAGTCAAGACGACTCATTGCATGGACA
CGCATGCGCAGAAAGCAAATGTAATGTCAACACAACTGAAAGATGCGAAG
AAACTTGTGAACAACCAAATGGATATATTTGCCATTGTTTGACTGGATTT
GAAGGAGAATTTTGTGATGGTGGTATGGAGGCCTGTCTATCAGAATGCAG
AAAACACTGCGGAAACACTTTGATGGAGAAAGGAAGCTACCAAAAATACG
ACTGTATACACGCATGCAAAATGAGGGACCTGGGGCTAGATAAAGAAGCA
TGTAAAGTGGAATGCCAACGACTGAATCCCGTTTCTAACTGTAATCCTAT
TGTGCTAGGTTACACATTCAACCTCTGCGTTCATGGCTTCAACCCGACAA
ATTGCTCAGGCAATTCAGCACACCCACAACGCACAGGTAATCCACCCATT
GAACATTGTAAGTTAGGCTGCGACACCTACTGAAAATGAATCTTCGAAAT
GATTTGCTGTAAATCTTTTATAAACATTCCGGGacttattttaatgtttt
ttgcaGACTTTCAAATATATCAAATCCCCAAAGGGAAGGGGCACTTAGTC
AAACCTGGTTAAGAGGAagccttttttaggctctgaataTAACTGACAGG
GTCCAAAATTTATTAATTTCCAAAATAAATATCTGACAGCATCGACTTTT
GGTAATCTTTAAAAATGTGTAGGGTGCAAATTAtagcatttttcaatttt
tgatattcaGCCATTGTGggcacttttcagggtgaaaatggctaaattta
tcgatttttctttctgacagggtgccaaatttaacaaatatTTATATCTG
ACAGGGTAAATTTTTCAAACGGGCACGTCCTCGTCGGcagtcaaggtcag
tgcccccccccccggaattaaattttctttttgaggaTATTATGAACTGT
CATGTACAGTATGTAAAAGTAAAGtgtgtttttttaactttgtgaatttg
aaaatatatagtTTATGGTTCTGTCTGCACTGAGCATTCTTTTAATAGTT
AATCACCATATACATTGTAAATGTACATTATTTTATTCGATAAAAATTAT
AATATCATTGTATATCATGGTGAAATTgagaaattgaagatttttgcaat
TGTTTTTTAAACTGTTTAGAGacgaaagagaaaatattcgCTTGCAAAAT
TCATTGTAATAATCGCTCTTGACTCCCGTCTAGGAGACccgagttcgatt
cccactgtAGTACTACGGTTCGCTTGGCAAATGAACACACCtacgcccgg
gtcaacccataccatgtgagggggattgggtaccactactctgatacaag
agtgtgggtgataTGCCAGGCATTGCGGTGTGTGGTGTCACTCATTCCGT
TCCGCGCCTGCGACGAGCTATATGCTCTCCCGCGTGGTTCGAGTGTCATC
ACTATGCATTATGGTACCTGTGTCTCGCGTGCACAACCAGCGGTGTCTGC
ACAACGCTAAGCGTTTCAAATCGAAAGAGGAAGAATTCCTACTTCACAAG
GAGTAGTACCCATTCCCCAGTGGGGAGAGCTCAT Run BLAST on NCBI transcript from alignment at sc0000386:149132..153544- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021462 ID=TCONS_00021462|Name=TCONS_00021462|organism=Clytia hemisphaerica|type=transcript|length=4413bp|location=Sequence derived from alignment at sc0000386:149132..153544- (Clytia hemisphaerica)
NTTTTTTTTCATTTTTTCTATGTACCATTACTTCACTCTAACAAGGTTAA
TTAATACATATTTGTAGAAGAGAACAGGATCACGAAAAAAGATGAGACTT
GTCTTACTATCTATTGTATTTATACCAAATTTTGTATTTTGTCAAATCAC
AAGGCTGTCACAATGCGACAAATACGGGGCAACTTTCAAGGTCTCAAAAC
GAAAAATAAAAGATCGCGGCAATGAATCAAATGGTCGACTAAGCGAGGAG
TTAGATGTAAAATCGAAAGAGAGATGCAGCACTCTGTGCATTGAAAACGC
AACATGCAAATCAGCATTTTATAAGTCAGACAAACGCAAATGCCATCTGT
ATGATAAGAAGTTTGACGAGAGCGAATTAGTGGAAGATCGGAACGGGGCA
TATTATTTGTGGATGGACGGCAAAAGTCAAGACGACTCATTGGTATGTAT
AAGCCCTGAATTTTTTCTATAATGGCAATTTTTTAAGAATATGAGTCTGA
AATTAGACAAAAACCTACGAACAAGCACAAGTCTCAAGTCTTCTTATCTC
TCAATGCTGAGCGAAAATTCACTGGTTTTCAATTCATGATATTCATGACA
TAGTGTTTTCGTTGGAAAGACCCCGGTTTTTGCCAGTAGTGGCAAATTTT
ATACAACTTTTGTCTAGTTTAAATTTGCTACTAGTGGCTAAAACCGGGGT
ATCTCCGTAAAAAAACATTACCTCATGGATATCATGAATAGTCGAAGATG
AAGAGTATCTCGCACTCTTCTTAGAGTCCAATTCGTTATTTCCATTTTTC
TCGCAAATTCTTTCAGGTATTTTTCCAAAAGAACAGAAAGTTTTCAATGC
TTTAACTTGAAGAAATTGGATCGTGTTTCGACTTAAGGAGACATTCGAGT
TGCAGAGGTTAAAGAGACAGTATTATTTACTTTATTATTGAATTATAAAT
GATTTTCTTAACAGCATGGACACGCATGCGCAGAAAGCAAATGTAATGTC
AACACAACTGAAAGATGCGAAGAAACTTGTGAACAACCAAATGGATATAT
TTGCCATTGTTTGACTGGATTTGAAGGAGAATTTTGTGGTGAGTTTCTCA
AAGTTTNCAATGGATACATTTGCCATTGTTTGACTGGATTTGAAGGAGAA
TTTTGTGGTGAGTTTATTAGTTTCTTTCTCAAAGAGTTACGCGTGTTGAA
TGATTTTAATTTTGGTCTTTCATTTCTTGTCCATTAACTACTGAACTTTC
AATAGACCCTGGATTTTCTCTATCCCAGTCGAACAAAATCTTTGATGGGA
GTTTAGTAGTACCCACTACTCAATATGGGTGAAAACATCTTTATATGGAA
AATTTCATTCATTGGATTATAAATTGAGCCACATCAAGTAGTGCTATAAT
TGGGGTAGCCTAGTTAACTAAGCCCGTATTCACAAGGCTAGGACACACGG
CTTATGGCAATATAGCGTTTTTCGGCGCTTTAAAGATTTTTTATATTTAC
GGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGAAACGAATTAAGTCAACGACGAATAATTATGCAAATTATGTGAGTT
TACGTTATCCCTCGCCGCGAAATTTGAATTGTCGTTGTTGTCAGTTGATA
AGCTGCCGAGTTTACTGTCCCTAAGCTAGTTATTCAGCCACAACTTAACC
ATCAGATTTATCCAAGTGACTGAATCAAACTAGCTTAGATTTCTAGGCTA
CAATTGGGGTACCACTTTCTTAAAAGAGATGACAGTTAGAGACCAGGGTT
TATAAAAGTCAGTGTCATTGACCCATTAAATTTTGCTTCAATTTTAAGTG
CGCGTTCGATCCCAAACTTATAAATTTCTGTAATTTTTTACTTTTTATTT
GATTGAGTCAAATCTCTAAATTCCATTTTAAACTCTTCATCGCAGATGGT
GGTATGGAGGCCTGTCTATCAGAATGCAGAAAACACTGCGGAAACACTTT
GATGGAGAAAGGAAGCTACCAAAAATACGACTGTATACACGCATGCAAAA
TGAGGGACCTGGGGCTAGATAAAGAAGCATGTAAAGTGGAATGCCAACGA
CTGAATCCCGTTTCTAACTGTAATCCTATTGTGCTAGGTTACACATTCAA
CCTCTGCGTTCATGGCTTCAACCCGACAAATTGCTCAGGCAATTCAGCAC
ACCCACAACGCACAGGTAATCCACCCATTGAACATTGTAAGTTAGGCTGC
GACACCTACTGAAAATGAATCTTCGAAATGATTTGCTGTAAATCTTTTAT
AAACATTCCGGGACTTATTTTAATGTTTTTTGCAGACTTTCAAATATATC
AAATCCCCAAAGGGAAGGGGCACTTAGTCAAACCTGGTTAAGAGGAAGCC
TTTTTTAGGCTCTGAATATAACTGACAGGGTCCAAAATTTATTAATTTCC
AAAATAAATATCTGACAGCATCGACTTTTGGTAATCTTTAAAAATGTGTA
GGGTGCAAATTATAGCATTTTTCAATTTTTGATATTCAGCCATTGTGGGC
ACTTTTCAGGGTGAAAATGGCTAAATTTATCGATTTTTCTTTCTGACAGG
GTGCCAAATTTAACAAATATTTATATCTGACAGGGTAAATTTTTCAAACG
GGCACGTCCTCGTCGGCAGTCAAGGTCAGTGCCCCCCCCCCCGGAATTAA
ATTTTCTTTTTGAGGATATTATGAACTGTCATGTACAGTATGTAAAAGTA
AAGTGTGTTTTTTTAACTTTGTGAATTTGAAAATATATAGTTTATGGTTC
TGTCTGCACTGAGCATTCTTTTAATAGTTAATCACCATATACATTGTAAA
TGTACATTATTTTATTCGATAAAAATTATAATATCATTGTATATCATGGT
GAAATTGAGAAATTGAAGATTTTTGCAATTGTTTTTTAAACTGTTTAGAG
ACGAAAGAGAAAATATTCGCTTGCAAAATTCATTGTAATAATCGCTCTTG
ACTCCCGTCTAGGAGACCCGAGTTCGATTCCCACTGTAGTACTACGGTTC
GCTTGGCAAATGAACACACCTACGCCCGGGTCAACCCATACCATGTGAGG
GGGATTGGGTACCACTACTCTGATACAAGAGTGTGGGTGATATGCCAGGC
ATTGCGGTGTGTGGTGTCACTCATTCCGTTCCGCGCCTGCGACGAGCTAT
ATGCTCTCCCGCGTGGTTCGAGTGTCATCACTATGCATTATGGTACCTGT
GTCTCGCGTGCACAACCAGCGGTGTCTGCACAACGCTAAGCGTTTCAAAT
CGAAAGAGGAAGAATTCCTACTTCACAAGGAGTAGTACCCATTCCCCAGT
GGGGAGAGCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021462-exon-sc0000386-1575043694:153103..153544 | TCONS_00021462-exon-sc0000386-1575043694:153103..153544 | Clytia hemisphaerica | exon |
| TCONS_00021462-exon-sc0000386-1575043694:152457..152580 | TCONS_00021462-exon-sc0000386-1575043694:152457..152580 | Clytia hemisphaerica | exon |
| TCONS_00021462-exon-sc0000386-1575043694:149132..150549 | TCONS_00021462-exon-sc0000386-1575043694:149132..150549 | Clytia hemisphaerica | exon |
| TCONS_00021462-exon-sc0000386-1510915933:153103..153544 | TCONS_00021462-exon-sc0000386-1510915933:153103..153544 | Clytia hemisphaerica | exon |
| TCONS_00021462-exon-sc0000386-1510915933:152457..152580 | TCONS_00021462-exon-sc0000386-1510915933:152457..152580 | Clytia hemisphaerica | exon |
| TCONS_00021462-exon-sc0000386-1510915933:149132..150549 | TCONS_00021462-exon-sc0000386-1510915933:149132..150549 | Clytia hemisphaerica | exon |
| TCONS_00021462-exon-sc0000386-1491911889:153103..153544 | TCONS_00021462-exon-sc0000386-1491911889:153103..153544 | Clytia hemisphaerica | exon |
| TCONS_00021462-exon-sc0000386-1491911889:152457..152580 | TCONS_00021462-exon-sc0000386-1491911889:152457..152580 | Clytia hemisphaerica | exon |
| TCONS_00021462-exon-sc0000386-1491911889:149132..150549 | TCONS_00021462-exon-sc0000386-1491911889:149132..150549 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000386 | supercontig | sc0000386:149132..153544 - |
Blast
The following BLAST results are available for this feature:
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